Wall clock time and date at job start Wed Apr 1 2020 05:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 119.99846 * 2 1 4 4 H 1.08006 * 119.99495 * 203.32305 * 3 2 1 5 5 C 1.38807 * 120.00151 * 23.31947 * 3 2 1 6 6 N 1.31614 * 119.99920 * 14.42128 * 5 3 2 7 7 Si 1.86802 * 119.99919 * 194.42100 * 5 3 2 8 8 H 1.48493 * 109.47270 * 60.00253 * 7 5 3 9 9 H 1.48500 * 109.46973 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47004 * 299.99839 * 7 5 3 11 11 C 1.46503 * 119.99913 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.47497 * 89.99280 * 11 2 1 13 13 H 1.09005 * 110.91230 * 57.45524 * 12 11 2 14 14 C 1.55278 * 111.09934 * 181.35849 * 12 11 2 15 15 C 1.54323 * 103.00828 * 153.45032 * 14 12 11 16 16 N 1.47028 * 107.27065 * 337.88911 * 15 14 12 17 17 C 1.34774 * 125.64878 * 178.91835 * 16 15 14 18 18 O 1.21585 * 119.99775 * 180.02562 * 17 16 15 19 19 C 1.47511 * 119.99924 * 0.02616 * 17 16 15 20 20 C 1.36824 * 126.94048 * 179.71395 * 19 17 16 21 21 C 1.41270 * 103.84190 * 179.90281 * 20 19 17 22 22 C 1.50700 * 126.70041 * 180.12384 * 21 20 19 23 23 F 1.39901 * 109.46986 * 185.30513 * 22 21 20 24 24 F 1.39901 * 109.46999 * 305.29901 * 22 21 20 25 25 F 1.39898 * 109.47403 * 65.30327 * 22 21 20 26 26 N 1.30123 * 106.59040 * 0.35735 * 21 20 19 27 27 O 1.20885 * 111.98500 * 359.76609 * 26 21 20 28 28 C 1.47424 * 108.70213 * 358.93770 * 16 15 14 29 29 H 1.08995 * 109.46746 * 275.18232 * 1 2 3 30 30 H 1.08994 * 109.46959 * 35.18286 * 1 2 3 31 31 H 1.08999 * 109.47396 * 155.18447 * 1 2 3 32 32 H 0.97005 * 119.99902 * 179.97438 * 6 5 3 33 33 H 1.09005 * 109.46867 * 329.98896 * 11 2 1 34 34 H 1.09001 * 109.46882 * 209.99811 * 11 2 1 35 35 H 1.09003 * 110.62135 * 35.09673 * 14 12 11 36 36 H 1.09003 * 110.90759 * 271.93887 * 14 12 11 37 37 H 1.08992 * 109.88398 * 218.47200 * 15 14 12 38 38 H 1.09008 * 109.88282 * 97.30053 * 15 14 12 39 39 H 1.07997 * 128.07862 * 0.02562 * 20 19 17 40 40 H 1.08997 * 110.36511 * 142.96627 * 28 16 15 41 41 H 1.09001 * 110.36630 * 265.18520 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1635 1.2241 -0.3703 5 6 1.5407 2.3389 0.4759 6 7 0.4323 2.2549 1.1806 7 14 2.2942 4.0099 0.1159 8 1 2.3582 4.2181 -1.3529 9 1 1.4589 5.0724 0.7310 10 1 3.6650 4.0675 0.6842 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7100 -1.4432 13 1 3.0023 -0.9457 -1.9924 14 6 3.1985 -3.0710 -1.4879 15 6 2.7668 -3.6592 -2.8478 16 7 1.5062 -3.0040 -3.2264 17 6 0.8145 -3.2280 -4.3612 18 8 -0.2206 -2.6257 -4.5711 19 6 1.3133 -4.2038 -5.3486 20 6 0.7270 -4.5439 -6.5371 21 6 1.6057 -5.5051 -7.0846 22 6 1.4487 -6.2228 -8.4004 23 9 2.4586 -7.1820 -8.5318 24 9 0.1999 -6.8519 -8.4424 25 9 1.5420 -5.3009 -9.4485 26 7 2.5743 -5.6534 -6.2284 27 8 2.4346 -4.9439 -5.2597 28 6 1.1245 -2.0612 -2.1593 29 1 -0.3632 0.0928 1.0234 30 1 -0.3633 0.8399 -0.5921 31 1 -0.3634 -0.9327 -0.4313 32 1 0.0069 3.0606 1.5135 33 1 1.6085 -2.0286 0.5131 34 1 3.1500 -1.1386 0.5133 35 1 2.8743 -3.7136 -0.6694 36 1 4.2781 -2.9240 -1.4566 37 1 2.6124 -4.7341 -2.7545 38 1 3.5303 -3.4560 -3.5988 39 1 -0.1918 -4.1645 -6.9592 40 1 0.6760 -1.1648 -2.5877 41 1 0.4323 -2.5356 -1.4637 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691964680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:45 Heat of formation + Delta-G solvation = -102.182891 kcal Electronic energy + Delta-G solvation = -30403.733428 eV Core-core repulsion = 25486.932736 eV Total energy + Delta-G solvation = -4916.800692 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 3.74 seconds Orbital eigenvalues (eV) -51.45574 -48.96696 -48.95605 -46.68682 -41.23467 -39.08047 -37.15069 -36.01808 -34.23486 -33.43181 -32.22911 -30.05704 -28.55010 -28.29465 -27.47583 -25.57078 -24.63087 -23.56046 -22.80076 -21.79100 -21.19108 -20.01141 -19.78180 -19.38945 -19.15866 -18.59489 -18.35285 -17.54102 -17.42983 -16.81883 -16.62774 -15.86691 -15.79145 -15.71676 -15.44176 -15.35250 -15.20654 -15.07180 -15.05086 -15.00794 -14.54150 -14.40894 -13.97867 -13.89674 -13.77622 -13.39087 -13.28390 -12.96951 -12.78678 -12.53836 -12.41638 -12.30716 -12.19427 -11.98010 -11.78761 -11.66301 -11.58320 -11.39448 -11.27484 -10.57983 -9.85572 -8.71512 -7.78336 -5.26924 -0.67725 0.15215 0.89198 1.09885 1.47697 1.50604 1.56138 1.64816 1.76463 2.07484 2.40339 2.53827 3.00170 3.12151 3.27647 3.34499 3.39145 3.62425 3.65439 3.69913 3.92628 4.11591 4.31167 4.36325 4.49978 4.65362 4.71848 4.81981 4.90092 4.95041 5.02399 5.06588 5.18765 5.28943 5.39948 5.54300 5.68621 5.75223 6.13958 6.31699 6.37883 6.65592 7.19834 7.93425 8.36442 9.24079 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.022854 B = 0.002120 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.858597 B =13204.196017 C =13481.583641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.618 5.618 3 C -0.256 4.256 4 H 0.073 0.927 5 C -0.056 4.056 6 N -0.939 5.939 7 Si 0.962 3.038 8 H -0.283 1.283 9 H -0.299 1.299 10 H -0.273 1.273 11 C 0.160 3.840 12 C -0.110 4.110 13 H 0.067 0.933 14 C -0.113 4.113 15 C 0.090 3.910 16 N -0.599 5.599 17 C 0.612 3.388 18 O -0.545 6.545 19 C -0.062 4.062 20 C -0.103 4.103 21 C -0.089 4.089 22 C 0.567 3.433 23 F -0.165 7.165 24 F -0.157 7.157 25 F -0.160 7.160 26 N -0.299 5.299 27 O 0.167 5.833 28 C 0.124 3.876 29 H 0.003 0.997 30 H 0.006 0.994 31 H 0.034 0.966 32 H 0.246 0.754 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.215 0.785 40 H 0.051 0.949 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.993 -20.695 -15.886 26.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.341 5.341 3 C -0.387 4.387 4 H 0.091 0.909 5 C -0.251 4.251 6 N -0.586 5.586 7 Si 0.791 3.209 8 H -0.209 1.209 9 H -0.225 1.225 10 H -0.198 1.198 11 C 0.034 3.966 12 C -0.132 4.132 13 H 0.085 0.915 14 C -0.151 4.151 15 C -0.031 4.031 16 N -0.330 5.330 17 C 0.398 3.602 18 O -0.423 6.423 19 C -0.127 4.127 20 C -0.125 4.125 21 C -0.246 4.246 22 C 0.512 3.488 23 F -0.147 7.147 24 F -0.138 7.138 25 F -0.141 7.141 26 N 0.012 4.988 27 O 0.079 5.921 28 C 0.002 3.998 29 H 0.022 0.978 30 H 0.025 0.975 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.106 0.894 39 H 0.232 0.768 40 H 0.070 0.930 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.406 -21.105 -16.057 27.064 hybrid contribution -0.774 1.661 -0.418 1.880 sum 4.632 -19.443 -16.475 25.902 Atomic orbital electron populations 1.20547 0.83238 0.95753 0.97397 1.44135 1.01842 1.01948 1.86155 1.19459 0.98643 0.86815 1.33734 0.90906 1.25748 0.98875 1.01763 0.98687 1.70217 1.22113 1.27525 1.38754 0.85417 0.77834 0.80064 0.77599 1.20925 1.22512 1.19815 1.20865 0.96247 0.86642 0.92888 1.22958 0.94222 0.97492 0.98483 0.91488 1.22698 1.01989 0.94547 0.95899 1.22522 0.84025 0.98278 0.98309 1.48601 1.25096 1.41350 1.17997 1.16141 0.83297 0.80867 0.79911 1.90914 1.24399 1.50091 1.76928 1.23981 0.89930 0.99756 0.99068 1.22921 1.02048 0.95085 0.92479 1.23503 0.97138 1.04635 0.99371 1.16443 0.74626 0.76423 0.81329 1.93263 1.60452 1.64764 1.96172 1.93288 1.41439 1.82595 1.96520 1.93289 1.95838 1.66020 1.58935 1.73811 1.19890 1.09795 0.95352 1.85106 1.35833 1.38341 1.32790 1.22308 0.98384 0.91325 0.87747 0.97848 0.97539 0.94777 0.94486 0.92595 0.92459 0.88704 0.87685 0.88428 0.89449 0.76785 0.92989 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.44 8.61 127.77 1.10 9.54 16 2 N -0.62 -28.97 2.84 -726.94 -2.06 -31.04 16 3 C -0.26 -13.47 9.64 84.03 0.81 -12.66 16 4 H 0.07 3.66 7.87 -2.91 -0.02 3.64 16 5 C -0.06 -3.09 5.07 84.86 0.43 -2.66 16 6 N -0.94 -55.41 10.81 21.65 0.23 -55.18 16 7 Si 0.96 44.68 29.58 68.60 2.03 46.71 16 8 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 9 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 C 0.16 5.49 5.17 86.38 0.45 5.93 16 12 C -0.11 -3.01 3.30 -9.36 -0.03 -3.05 16 13 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 14 C -0.11 -1.91 6.43 31.83 0.20 -1.70 16 15 C 0.09 1.45 5.58 86.73 0.48 1.94 16 16 N -0.60 -14.35 3.33 -815.57 -2.71 -17.06 16 17 C 0.61 15.70 7.85 86.69 0.68 16.38 16 18 O -0.54 -18.02 17.17 -3.98 -0.07 -18.09 16 19 C -0.06 -1.21 7.08 24.39 0.17 -1.04 16 20 C -0.10 -1.75 10.92 22.68 0.25 -1.50 16 21 C -0.09 -1.55 6.58 43.56 0.29 -1.26 16 22 C 0.57 8.99 3.53 71.24 0.25 9.24 16 23 F -0.17 -2.86 17.17 44.97 0.77 -2.09 16 24 F -0.16 -2.39 17.30 44.97 0.78 -1.62 16 25 F -0.16 -2.54 17.30 44.97 0.78 -1.76 16 26 N -0.30 -5.61 11.86 -48.86 -0.58 -6.19 16 27 O 0.17 2.91 9.02 65.83 0.59 3.51 16 28 C 0.12 3.62 4.95 86.85 0.43 4.05 16 29 H 0.00 0.17 7.32 -2.39 -0.02 0.16 16 30 H 0.01 0.31 7.40 -2.39 -0.02 0.30 16 31 H 0.03 1.37 6.19 -2.39 -0.01 1.36 16 32 H 0.25 14.24 8.31 -92.70 -0.77 13.47 16 33 H 0.06 1.75 8.03 -2.38 -0.02 1.73 16 34 H 0.06 1.95 8.04 -2.39 -0.02 1.93 16 35 H 0.09 1.36 8.04 -2.39 -0.02 1.34 16 36 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.10 1.18 7.83 -2.39 -0.02 1.16 16 38 H 0.09 1.22 7.73 -2.38 -0.02 1.20 16 39 H 0.22 2.82 8.06 -2.91 -0.02 2.80 16 40 H 0.05 1.90 8.04 -2.39 -0.02 1.88 16 41 H 0.07 2.16 7.19 -2.39 -0.02 2.14 16 Total: -1.00 -66.34 358.74 6.36 -59.99 By element: Atomic # 1 Polarization: -1.48 SS G_CDS: 1.08 Total: -0.39 kcal Atomic # 6 Polarization: 17.69 SS G_CDS: 5.51 Total: 23.21 kcal Atomic # 7 Polarization: -104.34 SS G_CDS: -5.12 Total: -109.46 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: 0.53 Total: -14.58 kcal Atomic # 9 Polarization: -7.79 SS G_CDS: 2.33 Total: -5.46 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -66.34 6.36 -59.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691964680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.197 kcal (2) G-P(sol) polarization free energy of solvation -66.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.74 seconds