Wall clock time and date at job start Wed Apr 1 2020 06:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42105 * 108.57626 * 2 1 4 4 O 1.42096 * 108.57712 * 131.02530 * 2 1 3 5 5 C 1.81401 * 101.92125 * 245.51341 * 2 1 3 6 6 C 1.50698 * 109.46909 * 180.02562 * 5 2 1 7 7 O 1.21285 * 120.00149 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99901 * 179.97438 * 6 5 2 9 9 C 1.47430 * 125.64921 * 354.62377 * 8 6 5 10 10 C 1.54688 * 104.94109 * 204.07768 * 9 8 6 11 11 C 1.55159 * 101.67926 * 323.27505 * 10 9 8 12 12 C 1.47024 * 125.64936 * 174.93680 * 8 6 5 13 13 H 1.08998 * 109.88179 * 59.48238 * 12 8 6 14 14 C 1.53000 * 109.88167 * 298.32171 * 12 8 6 15 15 N 1.46895 * 109.47048 * 175.61788 * 14 12 8 16 16 C 1.46907 * 110.99765 * 184.82280 * 15 14 12 17 17 C 1.50708 * 109.47055 * 179.97438 * 16 15 14 18 18 O 1.21297 * 119.99732 * 0.02562 * 17 16 15 19 19 N 1.34769 * 119.99766 * 180.02562 * 17 16 15 20 20 C 1.37100 * 119.99548 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00482 * 359.97438 * 20 19 17 22 22 C 1.38954 * 119.99564 * 179.97438 * 20 19 17 23 23 N 1.31401 * 120.00334 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99782 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47281 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.47262 * 119.99759 * 24 22 20 27 27 H 1.48495 * 109.47758 * 240.00196 * 24 22 20 28 28 H 1.09000 * 109.47517 * 174.48974 * 1 2 3 29 29 H 1.09000 * 109.47674 * 294.48939 * 1 2 3 30 30 H 1.09007 * 109.47255 * 54.48821 * 1 2 3 31 31 H 1.08998 * 109.46818 * 299.99632 * 5 2 1 32 32 H 1.08992 * 109.47090 * 60.00215 * 5 2 1 33 33 H 1.09000 * 110.36525 * 323.00671 * 9 8 6 34 34 H 1.09004 * 110.36065 * 85.32674 * 9 8 6 35 35 H 1.09000 * 111.10061 * 205.10958 * 10 9 8 36 36 H 1.08993 * 110.85133 * 81.33928 * 10 9 8 37 37 H 1.09000 * 110.72464 * 276.97741 * 11 10 9 38 38 H 1.08996 * 110.72108 * 153.69803 * 11 10 9 39 39 H 1.09000 * 109.47132 * 295.61418 * 14 12 8 40 40 H 1.08998 * 109.47399 * 55.61430 * 14 12 8 41 41 H 1.00898 * 111.00140 * 308.77291 * 15 14 12 42 42 H 1.08996 * 109.47121 * 299.99749 * 16 15 14 43 43 H 1.08997 * 109.46908 * 60.00356 * 16 15 14 44 44 H 0.96994 * 120.00449 * 359.97438 * 19 17 16 45 45 H 0.96996 * 120.00473 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 1.0161 5 6 2.1887 -0.7357 -1.6153 6 6 3.6826 -0.8183 -1.7951 7 8 4.4218 -0.4197 -0.9201 8 7 4.1973 -1.3351 -2.9285 9 6 3.4231 -1.9554 -4.0191 10 6 4.4214 -2.8987 -4.7305 11 6 5.7382 -2.0821 -4.6485 12 6 5.6244 -1.3797 -3.2790 13 1 6.1737 -1.9446 -2.5259 14 6 6.1811 0.0422 -3.3757 15 7 7.6281 -0.0142 -3.6224 16 6 8.2175 1.3314 -3.6076 17 6 9.6995 1.2335 -3.8631 18 8 10.2140 0.1495 -4.0406 19 7 10.4531 2.3504 -3.8943 20 6 11.8012 2.2613 -4.1273 21 1 12.2594 1.2962 -4.2853 22 6 12.5781 3.4129 -4.1600 23 7 12.0206 4.5873 -3.9682 24 14 14.4150 3.2916 -4.4767 25 1 14.7927 1.8672 -4.6602 26 1 14.7575 4.0558 -5.7031 27 1 15.1553 3.8552 -3.3194 28 1 -0.3634 -1.0229 -0.0987 29 1 -0.3634 0.4260 0.9352 30 1 -0.3634 0.5970 -0.8366 31 1 1.7610 -1.7369 -1.6664 32 1 1.7610 -0.1171 -2.4042 33 1 2.5859 -2.5239 -3.6142 34 1 3.0656 -1.1931 -4.7114 35 1 4.1307 -3.0680 -5.7673 36 1 4.5131 -3.8428 -4.1935 37 1 5.7888 -1.3499 -5.4544 38 1 6.6043 -2.7435 -4.6718 39 1 5.6929 0.5685 -4.1959 40 1 5.9922 0.5707 -2.4413 41 1 8.0856 -0.6167 -2.9548 42 1 7.7540 1.9396 -4.3842 43 1 8.0466 1.7921 -2.6347 44 1 10.0416 3.2172 -3.7528 45 1 12.5630 5.3911 -3.9907 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699746542.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:53 Heat of formation + Delta-G solvation = -163.880154 kcal Electronic energy + Delta-G solvation = -28354.215499 eV Core-core repulsion = 24112.040105 eV Total energy + Delta-G solvation = -4242.175394 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.45709 -40.19326 -38.87984 -38.01214 -36.99108 -36.69081 -35.83155 -33.36296 -33.21147 -31.67122 -30.85294 -29.98969 -28.27187 -26.42978 -24.95963 -23.64974 -22.10530 -21.26851 -20.43783 -19.91768 -19.68674 -18.63834 -18.07338 -17.68195 -17.39265 -17.17156 -16.92150 -16.66317 -16.54990 -16.12431 -15.91998 -15.58538 -15.26699 -15.02741 -14.93477 -14.25792 -14.07560 -13.99073 -13.89526 -13.83758 -13.63469 -13.50121 -13.32169 -13.23701 -13.08444 -13.02457 -12.88332 -12.74244 -12.43397 -12.24565 -12.12090 -11.99938 -11.87266 -11.66417 -11.59251 -11.54334 -11.36725 -10.42122 -10.05564 -9.85147 -9.49173 -8.49221 -5.98757 -1.05226 1.29069 1.35210 1.40239 1.55252 1.66931 1.84059 1.99473 2.27295 2.73691 2.94036 3.08570 3.17114 3.30814 3.46977 3.65058 3.72168 3.83089 3.94372 4.13373 4.19210 4.21995 4.27355 4.28796 4.32184 4.37060 4.44951 4.48220 4.64500 4.67665 4.82158 4.98430 5.00077 5.02275 5.16274 5.27259 5.38407 5.40331 5.74718 6.00473 6.19751 6.29841 6.55525 6.80823 7.08538 7.50969 8.05473 8.68626 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.015589 B = 0.002095 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.730593 B =13363.428296 C =14717.885570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.622 4.622 2 S 2.424 3.576 3 O -0.989 6.989 4 O -0.987 6.987 5 C -0.636 4.636 6 C 0.534 3.466 7 O -0.588 6.588 8 N -0.602 5.602 9 C 0.089 3.911 10 C -0.128 4.128 11 C -0.112 4.112 12 C 0.135 3.865 13 H 0.057 0.943 14 C 0.054 3.946 15 N -0.664 5.664 16 C 0.064 3.936 17 C 0.440 3.560 18 O -0.620 6.620 19 N -0.573 5.573 20 C -0.334 4.334 21 H 0.081 0.919 22 C -0.016 4.016 23 N -0.921 5.921 24 Si 0.997 3.003 25 H -0.272 1.272 26 H -0.268 1.268 27 H -0.271 1.271 28 H 0.167 0.833 29 H 0.139 0.861 30 H 0.165 0.835 31 H 0.209 0.791 32 H 0.206 0.794 33 H 0.116 0.884 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.017 0.983 41 H 0.341 0.659 42 H 0.108 0.892 43 H 0.053 0.947 44 H 0.396 0.604 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.611 -13.072 -1.378 36.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.776 4.776 2 S 2.610 3.390 3 O -0.986 6.986 4 O -0.984 6.984 5 C -0.765 4.765 6 C 0.322 3.678 7 O -0.470 6.470 8 N -0.335 5.335 9 C -0.032 4.032 10 C -0.165 4.165 11 C -0.150 4.150 12 C 0.030 3.970 13 H 0.075 0.925 14 C -0.076 4.076 15 N -0.296 5.296 16 C -0.069 4.069 17 C 0.228 3.772 18 O -0.506 6.506 19 N -0.210 5.210 20 C -0.464 4.464 21 H 0.099 0.901 22 C -0.215 4.215 23 N -0.562 5.562 24 Si 0.820 3.180 25 H -0.196 1.196 26 H -0.193 1.193 27 H -0.197 1.197 28 H 0.185 0.815 29 H 0.157 0.843 30 H 0.183 0.817 31 H 0.226 0.774 32 H 0.223 0.777 33 H 0.134 0.866 34 H 0.114 0.886 35 H 0.131 0.869 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.036 0.964 41 H 0.159 0.841 42 H 0.126 0.874 43 H 0.071 0.929 44 H 0.230 0.770 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -32.295 -13.083 -1.023 34.860 hybrid contribution 0.807 0.768 0.680 1.305 sum -31.488 -12.315 -0.343 33.813 Atomic orbital electron populations 1.30069 1.18417 1.14984 1.14116 1.07480 0.80734 0.74138 0.76691 1.93539 1.81740 1.36804 1.86486 1.93527 1.81730 1.67833 1.55292 1.30761 0.98624 1.19841 1.27252 1.19795 0.89890 0.77083 0.80987 1.90891 1.62796 1.50728 1.42563 1.48527 1.08004 1.58184 1.18777 1.22817 0.95396 0.96899 0.88056 1.22827 0.92979 0.97780 1.02942 1.22553 0.99512 0.99306 0.93621 1.21546 0.81631 0.95059 0.98724 0.92526 1.22304 0.88007 0.97455 0.99788 1.60136 1.02692 1.09788 1.56951 1.21542 0.91188 0.92309 1.01844 1.20678 0.89557 0.84235 0.82776 1.90480 1.75097 1.28808 1.56218 1.41940 1.07975 1.08049 1.62991 1.19736 0.84073 0.94760 1.47793 0.90116 1.26125 1.05035 0.93952 0.96405 1.69685 1.38549 0.98400 1.49577 0.84812 0.76441 0.78373 0.78326 1.19649 1.19345 1.19650 0.81491 0.84309 0.81701 0.77383 0.77689 0.86588 0.88580 0.86944 0.90265 0.89939 0.90416 0.89524 0.96431 0.84083 0.87408 0.92913 0.77047 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 0.15 10.62 113.37 1.20 1.36 16 2 S 2.42 36.53 4.60 -56.49 -0.26 36.27 16 3 O -0.99 -26.68 17.95 -125.76 -2.26 -28.94 16 4 O -0.99 -25.70 17.94 -125.74 -2.26 -27.95 16 5 C -0.64 -4.59 5.39 71.24 0.38 -4.21 16 6 C 0.53 11.73 7.59 87.66 0.67 12.39 16 7 O -0.59 -20.63 14.81 -0.17 0.00 -20.63 16 8 N -0.60 -10.74 3.07 -788.46 -2.42 -13.15 16 9 C 0.09 0.58 6.64 86.78 0.58 1.16 16 10 C -0.13 -1.06 7.07 31.91 0.23 -0.83 16 11 C -0.11 -1.94 6.28 31.78 0.20 -1.74 16 12 C 0.13 3.16 2.99 45.34 0.14 3.30 16 13 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 14 C 0.05 1.58 5.10 86.30 0.44 2.02 16 15 N -0.66 -23.44 5.94 -517.92 -3.08 -26.52 16 16 C 0.06 2.48 6.16 85.56 0.53 3.01 16 17 C 0.44 22.37 7.82 87.66 0.69 23.06 16 18 O -0.62 -35.82 15.78 -3.08 -0.05 -35.87 16 19 N -0.57 -31.09 5.29 -306.98 -1.62 -32.71 16 20 C -0.33 -19.72 9.68 84.04 0.81 -18.90 16 21 H 0.08 5.05 7.16 -2.91 -0.02 5.03 16 22 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 23 N -0.92 -51.55 13.05 21.66 0.28 -51.26 16 24 Si 1.00 44.24 29.55 68.60 2.03 46.26 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 26 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 27 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 28 H 0.17 -1.15 8.14 -2.39 -0.02 -1.17 16 29 H 0.14 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.16 -1.03 8.14 -2.39 -0.02 -1.05 16 31 H 0.21 -0.72 7.76 -2.39 -0.02 -0.74 16 32 H 0.21 -0.47 8.14 -2.39 -0.02 -0.49 16 33 H 0.12 -0.08 7.51 -2.39 -0.02 -0.10 16 34 H 0.10 0.30 8.14 -2.38 -0.02 0.28 16 35 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.08 1.50 7.78 -2.39 -0.02 1.48 16 38 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.09 2.23 8.04 -2.39 -0.02 2.22 16 40 H 0.02 0.60 6.89 -2.39 -0.02 0.59 16 41 H 0.34 13.01 8.36 -89.70 -0.75 12.26 16 42 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 43 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.40 20.57 7.90 -92.71 -0.73 19.84 16 45 H 0.28 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -101.69 389.38 -3.77 -105.45 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: -0.46 Total: 28.85 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: 6.32 Total: 20.21 kcal Atomic # 7 Polarization: -116.81 SS G_CDS: -6.84 Total: -123.65 kcal Atomic # 8 Polarization: -108.84 SS G_CDS: -4.56 Total: -113.40 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 36.53 SS G_CDS: -0.26 Total: 36.27 kcal Total: -101.69 -3.77 -105.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699746542.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.427 kcal (2) G-P(sol) polarization free energy of solvation -101.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds