Wall clock time and date at job start Wed Apr 1 2020 06:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42108 * 108.57702 * 2 1 4 4 O 1.42102 * 108.57998 * 228.97532 * 2 1 3 5 5 C 1.81400 * 101.92157 * 114.48162 * 2 1 3 6 6 C 1.50699 * 109.46869 * 179.97438 * 5 2 1 7 7 O 1.21280 * 120.00259 * 0.02562 * 6 5 2 8 8 N 1.34784 * 119.99755 * 180.02562 * 6 5 2 9 9 C 1.46496 * 120.00082 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47422 * 180.02562 * 9 8 6 11 11 H 1.08999 * 109.47439 * 64.99632 * 10 9 8 12 12 N 1.46903 * 109.47023 * 304.99865 * 10 9 8 13 13 C 1.46902 * 111.00170 * 140.12975 * 12 10 9 14 14 C 1.50699 * 109.47372 * 174.39426 * 13 12 10 15 15 O 1.21291 * 119.99649 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00033 * 179.97438 * 14 13 12 17 17 C 1.37099 * 119.99553 * 179.97438 * 16 14 13 18 18 H 1.07996 * 120.00626 * 0.02562 * 17 16 14 19 19 C 1.38952 * 119.99457 * 180.02562 * 17 16 14 20 20 N 1.31413 * 120.00430 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99727 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47080 * 90.00257 * 21 19 17 23 23 H 1.48500 * 109.47127 * 209.99872 * 21 19 17 24 24 H 1.48498 * 109.47345 * 330.00004 * 21 19 17 25 25 C 1.52992 * 109.47260 * 185.00174 * 10 9 8 26 26 C 1.53005 * 117.50359 * 134.22221 * 25 10 9 27 27 C 1.52997 * 117.50216 * 65.56038 * 25 10 9 28 28 H 1.09000 * 109.47076 * 305.51549 * 1 2 3 29 29 H 1.09003 * 109.46923 * 65.51420 * 1 2 3 30 30 H 1.08997 * 109.46951 * 185.51246 * 1 2 3 31 31 H 1.09004 * 109.46343 * 60.00724 * 5 2 1 32 32 H 1.08990 * 109.47390 * 300.00349 * 5 2 1 33 33 H 0.96995 * 119.99721 * 0.02562 * 8 6 5 34 34 H 1.09004 * 109.47287 * 60.00006 * 9 8 6 35 35 H 1.09003 * 109.46973 * 300.00420 * 9 8 6 36 36 H 1.00905 * 110.99736 * 16.17669 * 12 10 9 37 37 H 1.09005 * 109.46984 * 294.39009 * 13 12 10 38 38 H 1.08994 * 109.46781 * 54.39056 * 13 12 10 39 39 H 0.96996 * 119.99793 * 359.97438 * 16 14 13 40 40 H 0.96999 * 120.00564 * 180.02562 * 20 19 17 41 41 H 1.09007 * 115.55225 * 279.88292 * 25 10 9 42 42 H 1.09007 * 117.49309 * 359.97438 * 26 25 10 43 43 H 1.08992 * 117.50306 * 145.01915 * 26 25 10 44 44 H 1.09008 * 117.49615 * 214.97994 * 27 25 10 45 45 H 1.08995 * 117.49918 * 359.97384 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1888 -0.7355 1.6153 6 6 3.6827 -0.8181 1.7952 7 8 4.4218 -0.4196 0.9201 8 7 4.1974 -1.3349 2.9286 9 6 5.6497 -1.4147 3.1038 10 6 5.9658 -2.0363 4.4656 11 1 5.6160 -3.0685 4.4839 12 7 5.2896 -1.2714 5.5218 13 6 4.7446 -2.1652 6.5524 14 6 4.1818 -1.3436 7.6835 15 8 4.2304 -0.1326 7.6359 16 7 3.6245 -1.9544 8.7478 17 6 3.1130 -1.2068 9.7769 18 1 3.1562 -0.1286 9.7346 19 6 2.5389 -1.8366 10.8744 20 7 2.4867 -3.1487 10.9262 21 14 1.8413 -0.8181 12.2763 22 1 0.4103 -0.5239 12.0101 23 1 1.9624 -1.5767 13.5472 24 1 2.5964 0.4558 12.3863 25 6 7.4771 -2.0058 4.7017 26 6 7.9688 -1.5321 6.0710 27 6 8.1425 -0.6353 4.8427 28 1 -0.3633 0.5970 0.8365 29 1 -0.3633 0.4259 -0.9353 30 1 -0.3633 -1.0229 0.0987 31 1 1.7611 -1.7369 1.6664 32 1 1.7611 -0.1170 2.4042 33 1 3.6062 -1.6539 3.6283 34 1 6.0774 -0.4134 3.0530 35 1 6.0774 -2.0329 2.3144 36 1 4.5673 -0.6821 5.1355 37 1 3.9538 -2.7784 6.1203 38 1 5.5381 -2.8094 6.9311 39 1 3.5854 -2.9228 8.7856 40 1 2.0857 -3.5884 11.6922 41 1 8.0462 -2.7932 4.2074 42 1 7.2155 -1.2419 6.8034 43 1 8.8615 -2.0075 6.4772 44 1 9.1496 -0.5212 4.4414 45 1 7.5037 0.2445 4.7668 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713862458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:45 Heat of formation + Delta-G solvation = -136.196771 kcal Electronic energy + Delta-G solvation = -28454.351188 eV Core-core repulsion = 24213.376235 eV Total energy + Delta-G solvation = -4240.974953 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.19384 -40.23185 -39.16787 -38.00209 -37.00802 -36.30199 -35.95079 -34.71570 -33.22340 -32.16448 -30.47019 -29.84972 -27.72605 -25.62048 -24.71532 -23.02960 -22.02853 -21.07806 -20.56868 -19.90601 -19.80454 -18.84930 -18.04807 -17.55932 -17.50290 -17.25693 -16.91038 -16.73655 -16.43729 -16.29993 -16.11304 -15.76605 -15.31550 -15.22117 -14.77610 -14.63224 -14.09165 -13.96182 -13.90889 -13.85510 -13.52569 -13.36361 -13.11240 -13.07717 -13.01800 -12.91993 -12.70314 -12.39722 -12.37083 -12.14686 -12.12701 -12.11183 -11.70638 -11.48440 -11.47164 -11.07561 -10.80784 -10.34723 -10.29065 -9.98158 -9.34668 -8.44928 -5.92716 -1.04091 1.29091 1.38507 1.43369 1.54944 1.80907 1.86510 2.09535 2.29690 2.81362 2.89062 2.98910 3.10452 3.23219 3.44791 3.50311 3.81858 3.94407 3.95971 4.10961 4.12890 4.30419 4.30556 4.31833 4.35550 4.41022 4.47221 4.50069 4.63070 4.76684 4.87793 4.97293 5.00136 5.07770 5.22032 5.39282 5.43482 5.56468 5.89890 6.10291 6.14421 6.36594 6.63281 6.88128 7.16100 7.60586 8.16351 8.72190 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.009745 B = 0.002593 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.524188 B =10794.991682 C =13007.046251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.629 4.629 2 S 2.440 3.560 3 O -0.985 6.985 4 O -0.980 6.980 5 C -0.652 4.652 6 C 0.530 3.470 7 O -0.579 6.579 8 N -0.711 5.711 9 C 0.114 3.886 10 C 0.113 3.887 11 H 0.089 0.911 12 N -0.675 5.675 13 C 0.065 3.935 14 C 0.440 3.560 15 O -0.622 6.622 16 N -0.573 5.573 17 C -0.330 4.330 18 H 0.077 0.923 19 C -0.011 4.011 20 N -0.919 5.919 21 Si 0.987 3.013 22 H -0.270 1.270 23 H -0.273 1.273 24 H -0.276 1.276 25 C -0.141 4.141 26 C -0.170 4.170 27 C -0.171 4.171 28 H 0.158 0.842 29 H 0.141 0.859 30 H 0.163 0.837 31 H 0.207 0.793 32 H 0.198 0.802 33 H 0.415 0.585 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.346 0.654 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.396 0.604 40 H 0.277 0.723 41 H 0.127 0.873 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.446 -3.995 -17.494 18.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.783 4.783 2 S 2.624 3.376 3 O -0.982 6.982 4 O -0.977 6.977 5 C -0.781 4.781 6 C 0.316 3.684 7 O -0.460 6.460 8 N -0.363 5.363 9 C -0.010 4.010 10 C 0.003 3.997 11 H 0.106 0.894 12 N -0.310 5.310 13 C -0.067 4.067 14 C 0.228 3.772 15 O -0.508 6.508 16 N -0.211 5.211 17 C -0.460 4.460 18 H 0.095 0.905 19 C -0.210 4.210 20 N -0.560 5.560 21 Si 0.812 3.188 22 H -0.195 1.195 23 H -0.198 1.198 24 H -0.201 1.201 25 C -0.160 4.160 26 C -0.208 4.208 27 C -0.208 4.208 28 H 0.177 0.823 29 H 0.160 0.840 30 H 0.181 0.819 31 H 0.224 0.776 32 H 0.215 0.785 33 H 0.252 0.748 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.166 0.834 37 H 0.096 0.904 38 H 0.121 0.879 39 H 0.230 0.770 40 H 0.086 0.914 41 H 0.145 0.855 42 H 0.101 0.899 43 H 0.112 0.888 44 H 0.118 0.882 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.761 -2.628 -18.277 18.549 hybrid contribution -1.621 -0.608 1.478 2.277 sum -3.382 -3.236 -16.799 17.439 Atomic orbital electron populations 1.30114 1.19485 1.14721 1.13973 1.07086 0.80176 0.74056 0.76242 1.93535 1.81542 1.36726 1.86404 1.93525 1.81487 1.67780 1.54899 1.30857 0.99553 1.19915 1.27734 1.19895 0.89627 0.76776 0.82134 1.90864 1.62490 1.49693 1.42926 1.45856 1.08676 1.62672 1.19126 1.21683 0.79727 1.02233 0.97360 1.21280 0.93865 0.97121 0.87420 0.89365 1.59887 1.35175 1.22510 1.13428 1.21662 0.99744 0.93876 0.91444 1.20881 0.82446 0.88721 0.85201 1.90520 1.62595 1.16326 1.81342 1.41920 1.52597 1.09381 1.17191 1.19608 1.36128 0.92166 0.98085 0.90514 1.25941 0.97533 0.96940 1.00625 1.69655 1.45389 1.08533 1.32469 0.85004 0.78616 0.77858 0.77352 1.19509 1.19825 1.20086 1.22355 0.93861 0.98563 1.01229 1.22825 1.02370 1.04021 0.91564 1.22775 1.01353 0.94003 1.02715 0.82340 0.84020 0.81865 0.77584 0.78501 0.74760 0.91715 0.89447 0.83354 0.90398 0.87879 0.76972 0.91384 0.85479 0.89862 0.88808 0.88222 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -1.76 10.62 113.37 1.20 -0.55 16 2 S 2.44 38.61 4.60 -56.49 -0.26 38.35 16 3 O -0.98 -26.59 17.95 -125.76 -2.26 -28.84 16 4 O -0.98 -24.71 17.95 -125.74 -2.26 -26.97 16 5 C -0.65 -6.46 6.29 71.24 0.45 -6.01 16 6 C 0.53 11.43 7.85 87.66 0.69 12.12 16 7 O -0.58 -18.54 15.62 -0.16 0.00 -18.54 16 8 N -0.71 -12.65 4.91 -463.06 -2.27 -14.93 16 9 C 0.11 2.28 5.15 86.38 0.44 2.72 16 10 C 0.11 2.16 2.68 44.91 0.12 2.28 16 11 H 0.09 1.34 7.66 -2.39 -0.02 1.32 16 12 N -0.68 -17.55 4.26 -495.59 -2.11 -19.67 16 13 C 0.06 1.83 5.25 85.56 0.45 2.28 16 14 C 0.44 18.88 7.83 87.66 0.69 19.57 16 15 O -0.62 -32.11 15.90 -3.06 -0.05 -32.15 16 16 N -0.57 -27.18 5.29 -306.99 -1.62 -28.80 16 17 C -0.33 -17.83 9.68 84.04 0.81 -17.02 16 18 H 0.08 4.47 7.16 -2.91 -0.02 4.45 16 19 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 20 N -0.92 -47.39 13.05 21.66 0.28 -47.11 16 21 Si 0.99 41.36 29.55 68.60 2.03 43.38 16 22 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 23 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 24 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 25 C -0.14 -2.79 5.78 -10.80 -0.06 -2.85 16 26 C -0.17 -4.24 9.73 30.62 0.30 -3.94 16 27 C -0.17 -3.98 9.59 30.62 0.29 -3.68 16 28 H 0.16 -0.27 8.14 -2.39 -0.02 -0.28 16 29 H 0.14 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.16 -0.50 8.14 -2.39 -0.02 -0.52 16 31 H 0.21 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.20 0.60 8.14 -2.40 -0.02 0.58 16 33 H 0.41 5.34 7.67 -92.71 -0.71 4.63 16 34 H 0.06 1.59 7.53 -2.39 -0.02 1.57 16 35 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.35 9.29 6.80 -89.69 -0.61 8.68 16 37 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.10 2.73 7.85 -2.39 -0.02 2.72 16 39 H 0.40 17.75 7.90 -92.71 -0.73 17.02 16 40 H 0.28 13.42 8.31 -92.71 -0.77 12.65 16 41 H 0.13 1.95 8.14 -2.38 -0.02 1.93 16 42 H 0.08 2.68 6.36 -2.38 -0.02 2.66 16 43 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 45 H 0.08 2.11 7.94 -2.39 -0.02 2.09 16 Total: -1.00 -91.04 392.95 -3.68 -94.72 By element: Atomic # 1 Polarization: 36.72 SS G_CDS: -1.01 Total: 35.72 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 5.85 Total: 4.84 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -5.73 Total: -110.50 kcal Atomic # 8 Polarization: -101.95 SS G_CDS: -4.56 Total: -106.51 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.38 kcal Atomic # 16 Polarization: 38.61 SS G_CDS: -0.26 Total: 38.35 kcal Total: -91.04 -3.68 -94.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713862458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.479 kcal (2) G-P(sol) polarization free energy of solvation -91.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds