Wall clock time and date at job start Wed Apr 1 2020 04:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81399 * 109.47073 * 2 1 4 4 O 1.42102 * 108.57939 * 65.51080 * 3 2 1 5 5 O 1.42099 * 108.57791 * 294.48829 * 3 2 1 6 6 C 1.81396 * 101.91934 * 179.97438 * 3 2 1 7 7 C 1.50702 * 109.46989 * 179.97438 * 6 3 2 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 3 9 9 N 1.34777 * 119.99928 * 179.72353 * 7 6 3 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 H 1.09003 * 112.84940 * 336.20268 * 10 9 7 12 12 C 1.53783 * 113.61254 * 107.50239 * 10 9 7 13 13 C 1.53779 * 87.07914 * 89.12073 * 12 10 9 14 14 H 1.09001 * 113.69235 * 270.87156 * 13 12 10 15 15 N 1.46904 * 113.61737 * 139.97829 * 13 12 10 16 16 C 1.46904 * 110.99811 * 107.50160 * 15 13 12 17 17 C 1.50699 * 109.47088 * 180.02562 * 16 15 13 18 18 O 1.21294 * 119.99848 * 359.97438 * 17 16 15 19 19 N 1.34772 * 120.00197 * 180.02562 * 17 16 15 20 20 C 1.37091 * 120.00356 * 179.97438 * 19 17 16 21 21 H 1.08002 * 120.00253 * 359.97438 * 20 19 17 22 22 C 1.38955 * 120.00428 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99703 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00206 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46895 * 60.00143 * 24 22 20 26 26 H 1.48494 * 109.46970 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47165 * 299.99910 * 24 22 20 28 28 C 1.53779 * 87.08398 * 25.43135 * 13 12 10 29 29 H 1.09003 * 109.47310 * 300.00229 * 1 2 3 30 30 H 1.08997 * 109.46839 * 59.99954 * 1 2 3 31 31 H 1.09001 * 109.47122 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46647 * 239.99905 * 2 1 3 33 33 H 1.08997 * 109.46839 * 120.00045 * 2 1 3 34 34 H 1.09004 * 109.47150 * 60.00067 * 6 3 2 35 35 H 1.08994 * 109.47490 * 299.99793 * 6 3 2 36 36 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 37 37 H 1.09002 * 113.61447 * 203.66166 * 12 10 9 38 38 H 1.08996 * 113.61645 * 334.57335 * 12 10 9 39 39 H 1.00900 * 111.00197 * 231.45569 * 15 13 12 40 40 H 1.09000 * 109.47174 * 300.00654 * 16 15 13 41 41 H 1.08996 * 109.47106 * 60.00320 * 16 15 13 42 42 H 0.97005 * 120.00073 * 0.02562 * 19 17 16 43 43 H 0.96996 * 120.00236 * 180.02562 * 23 22 20 44 44 H 1.08997 * 113.61904 * 220.02064 * 28 13 12 45 45 H 1.09003 * 113.61234 * 89.11679 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7592 2.3232 1.2258 5 8 1.7592 2.3232 -1.2258 6 6 3.9329 1.4719 0.0008 7 6 4.6176 2.8144 0.0002 8 8 3.9575 3.8318 -0.0001 9 7 5.9635 2.8844 0.0063 10 6 6.6291 4.1894 0.0119 11 1 6.0045 4.9849 -0.3946 12 6 7.2806 4.5429 1.3593 13 6 8.5467 3.8399 0.8422 14 1 8.5772 2.7732 1.0645 15 7 9.7920 4.5327 1.1990 16 6 10.5239 3.7977 2.2393 17 6 11.7922 4.5373 2.5790 18 8 12.0603 5.5745 2.0101 19 7 12.6290 4.0459 3.5141 20 6 13.7831 4.7184 3.8228 21 1 14.0219 5.6419 3.3162 22 6 14.6462 4.2114 4.7865 23 7 14.3559 3.0875 5.4025 24 14 16.2184 5.1282 5.2075 25 1 15.8812 6.4857 5.7063 26 1 16.9584 4.3849 6.2586 27 1 17.0648 5.2432 3.9929 28 6 8.0492 4.1593 -0.5774 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.2260 0.9146 -0.8890 35 1 4.2253 0.9149 0.8909 36 1 6.4916 2.0707 0.0069 37 1 7.4087 5.6142 1.5147 38 1 6.8205 4.0426 2.2114 39 1 10.3702 4.6794 0.3852 40 1 9.9023 3.7144 3.1308 41 1 10.7709 2.8008 1.8742 42 1 12.4152 3.2158 3.9683 43 1 14.9582 2.7338 6.0755 44 1 8.2096 3.3492 -1.2889 45 1 8.3874 5.1256 -0.9515 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713968897.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:05 Heat of formation + Delta-G solvation = -115.089366 kcal Electronic energy + Delta-G solvation = -27346.476886 eV Core-core repulsion = 23106.417219 eV Total energy + Delta-G solvation = -4240.059667 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -40.66121 -38.93929 -38.03064 -37.37719 -36.39393 -34.75112 -33.91798 -33.72328 -32.81300 -31.23762 -30.69153 -26.93197 -25.87312 -24.81495 -24.38663 -22.97349 -21.63492 -19.70527 -19.30198 -19.14282 -18.09206 -17.90674 -17.25276 -16.92890 -16.67241 -16.22518 -15.89339 -15.72092 -15.28268 -14.96930 -14.81500 -14.65970 -14.39208 -14.14519 -13.81772 -13.68011 -13.47593 -13.34134 -13.08676 -12.61705 -12.46400 -12.42549 -12.36546 -12.14338 -12.11123 -12.04077 -11.61681 -11.56277 -11.40958 -11.04439 -10.99333 -10.71453 -10.66752 -10.58294 -10.45875 -10.23180 -9.52397 -9.47318 -8.48221 -8.12554 -7.98651 -6.44093 -3.84979 -0.64311 1.96602 2.22311 2.45346 3.18648 3.24447 3.28907 3.29013 3.46772 3.87956 3.94518 3.98980 4.02349 4.08309 4.29366 4.32684 4.35586 4.40491 4.50319 4.60471 4.75887 4.89253 5.01530 5.05041 5.15844 5.23475 5.32829 5.37747 5.50822 5.63004 5.68924 5.77063 5.83071 5.96853 6.01478 6.19004 6.32067 6.88302 7.20998 7.52822 7.58281 7.60762 8.03647 8.58617 9.15415 9.51549 10.02994 10.73544 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.027799 B = 0.001532 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.976355 B =18275.844252 C =18892.310770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.620 4.620 3 S 2.450 3.550 4 O -0.917 6.917 5 O -0.919 6.919 6 C -0.664 4.664 7 C 0.544 3.456 8 O -0.525 6.525 9 N -0.699 5.699 10 C 0.113 3.887 11 H 0.111 0.889 12 C -0.135 4.135 13 C 0.058 3.942 14 H 0.069 0.931 15 N -0.655 5.655 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.583 6.583 19 N -0.563 5.563 20 C -0.301 4.301 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 C -0.146 4.146 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.160 0.840 35 H 0.161 0.839 36 H 0.404 0.596 37 H 0.104 0.896 38 H 0.068 0.932 39 H 0.351 0.649 40 H 0.085 0.915 41 H 0.042 0.958 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.072 0.928 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.169 -13.498 -12.066 30.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.749 4.749 3 S 2.626 3.374 4 O -0.914 6.914 5 O -0.916 6.916 6 C -0.791 4.791 7 C 0.327 3.673 8 O -0.401 6.401 9 N -0.350 5.350 10 C 0.007 3.993 11 H 0.129 0.871 12 C -0.175 4.175 13 C -0.052 4.052 14 H 0.087 0.913 15 N -0.287 5.287 16 C -0.083 4.083 17 C 0.225 3.775 18 O -0.467 6.467 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.185 4.185 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.178 0.822 35 H 0.179 0.821 36 H 0.239 0.761 37 H 0.123 0.877 38 H 0.087 0.913 39 H 0.172 0.828 40 H 0.103 0.897 41 H 0.060 0.940 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -25.066 -10.958 -11.851 29.813 hybrid contribution 2.040 -2.406 0.185 3.160 sum -23.026 -13.363 -11.667 29.067 Atomic orbital electron populations 1.21530 0.89998 1.05046 1.04081 1.30333 1.07962 1.24963 1.11645 1.07577 0.76339 0.77559 0.75916 1.93603 1.79601 1.72464 1.45712 1.93592 1.79649 1.72524 1.45800 1.30919 1.29110 1.05536 1.13527 1.19089 0.83252 0.88436 0.76475 1.90890 1.64124 1.35899 1.49205 1.45543 1.05574 1.09599 1.74240 1.21925 0.93365 0.85256 0.98725 0.87147 1.23565 0.94768 1.03003 0.96142 1.23124 0.91134 0.96128 0.94857 0.91329 1.60208 1.06332 1.48042 1.14144 1.21734 0.95207 0.94847 0.96477 1.19813 0.85750 0.87737 0.84199 1.90526 1.76191 1.25104 1.54924 1.41857 1.19647 1.23829 1.34643 1.19665 0.96663 1.07079 1.19630 0.87951 1.25263 0.99832 0.96371 0.96422 1.69600 1.38502 1.19818 1.26435 0.85906 0.80886 0.79214 0.78149 1.19852 1.20977 1.19917 1.23616 0.94337 1.03829 0.96707 0.90571 0.90623 0.89856 0.84879 0.84813 0.82188 0.82092 0.76101 0.87741 0.91336 0.82822 0.89667 0.93969 0.77492 0.91817 0.90961 0.87460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 9.92 37.16 0.37 -0.19 16 2 C -0.62 -1.60 6.53 37.16 0.24 -1.36 16 3 S 2.45 17.84 3.96 -107.50 -0.43 17.41 16 4 O -0.92 -10.67 17.95 -59.52 -1.07 -11.74 16 5 O -0.92 -10.37 17.95 -59.53 -1.07 -11.44 16 6 C -0.66 -2.90 6.29 36.01 0.23 -2.67 16 7 C 0.54 5.23 7.85 -10.98 -0.09 5.14 16 8 O -0.52 -7.56 15.22 2.56 0.04 -7.52 16 9 N -0.70 -5.43 5.26 -53.02 -0.28 -5.71 16 10 C 0.11 1.08 4.32 -67.12 -0.29 0.79 16 11 H 0.11 1.21 7.46 -51.93 -0.39 0.82 16 12 C -0.14 -1.50 7.68 -25.92 -0.20 -1.70 16 13 C 0.06 0.63 4.02 -66.90 -0.27 0.37 16 14 H 0.07 0.66 7.87 -51.93 -0.41 0.25 16 15 N -0.65 -9.91 6.18 -107.13 -0.66 -10.58 16 16 C 0.05 0.85 6.01 -4.97 -0.03 0.82 16 17 C 0.44 10.23 7.82 -10.99 -0.09 10.14 16 18 O -0.58 -15.70 15.78 5.55 0.09 -15.61 16 19 N -0.56 -14.13 5.29 -10.96 -0.06 -14.19 16 20 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.32 13.05 55.50 0.72 -23.59 16 24 Si 0.93 20.93 29.55 -169.99 -5.02 15.90 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 28 C -0.15 -1.29 7.40 -25.92 -0.19 -1.48 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.13 0.00 8.14 -51.93 -0.42 -0.42 16 33 H 0.13 0.03 8.14 -51.93 -0.42 -0.39 16 34 H 0.16 0.06 8.14 -51.92 -0.42 -0.36 16 35 H 0.16 0.13 8.14 -51.93 -0.42 -0.29 16 36 H 0.40 1.86 8.70 -40.82 -0.36 1.50 16 37 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.35 5.45 8.25 -39.29 -0.32 5.12 16 40 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 41 H 0.04 0.63 8.13 -51.93 -0.42 0.21 16 42 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 43 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 396.00 15.07 5.97 5.97 Total: -1.00 -40.34 396.00 -9.13 -49.46 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -6.80 Total: 9.78 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -0.55 Total: 1.86 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.28 Total: -54.07 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -2.01 Total: -46.31 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 17.84 SS G_CDS: -0.43 Total: 17.41 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -40.34 -9.13 -49.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713968897.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.627 kcal (2) G-P(sol) polarization free energy of solvation -40.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds