Wall clock time and date at job start Wed Apr 1 2020 05:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36945 * 119.99959 * 2 1 4 4 H 1.07997 * 119.99963 * 183.56106 * 3 2 1 5 5 C 1.38809 * 119.99668 * 3.56797 * 3 2 1 6 6 N 1.31623 * 120.00506 * 352.50035 * 5 3 2 7 7 Si 1.86799 * 119.99948 * 172.77406 * 5 3 2 8 8 H 1.48504 * 109.47029 * 89.99558 * 7 5 3 9 9 H 1.48499 * 109.47536 * 209.99827 * 7 5 3 10 10 H 1.48508 * 109.46970 * 329.99994 * 7 5 3 11 11 C 1.46493 * 120.00336 * 179.97438 * 2 1 3 12 12 C 1.53005 * 109.47407 * 267.35317 * 11 2 1 13 13 H 1.08999 * 109.87183 * 54.27667 * 12 11 2 14 14 C 1.54325 * 109.88080 * 293.26341 * 12 11 2 15 15 C 1.55154 * 102.94424 * 218.38998 * 14 12 11 16 16 C 1.54906 * 101.58043 * 35.49986 * 15 14 12 17 17 N 1.47016 * 109.88513 * 175.45723 * 12 11 2 18 18 C 1.34780 * 125.64904 * 298.33617 * 17 12 11 19 19 O 1.21619 * 119.99803 * 4.65682 * 18 17 12 20 20 C 1.47421 * 120.00224 * 184.65847 * 18 17 12 21 21 C 1.36087 * 126.44584 * 179.70871 * 20 18 17 22 22 O 1.34258 * 106.94927 * 179.90085 * 21 20 18 23 23 C 1.34058 * 108.22427 * 0.36567 * 22 21 20 24 24 C 1.50705 * 125.37791 * 179.79957 * 23 22 21 25 25 F 1.39899 * 109.47315 * 269.96169 * 24 23 22 26 26 F 1.39901 * 109.46797 * 29.96640 * 24 23 22 27 27 F 1.39900 * 109.46850 * 149.96263 * 24 23 22 28 28 N 1.29935 * 109.23942 * 359.77056 * 23 22 21 29 29 H 1.09000 * 109.47323 * 62.10998 * 1 2 3 30 30 H 1.09001 * 109.46858 * 182.10889 * 1 2 3 31 31 H 1.08998 * 109.47144 * 302.11193 * 1 2 3 32 32 H 0.96991 * 119.99988 * 179.97438 * 6 5 3 33 33 H 1.09004 * 109.47170 * 27.34968 * 11 2 1 34 34 H 1.08998 * 109.47398 * 147.34891 * 11 2 1 35 35 H 1.09000 * 110.71811 * 336.75158 * 14 12 11 36 36 H 1.09006 * 110.71695 * 100.02263 * 14 12 11 37 37 H 1.09002 * 111.00478 * 153.57739 * 15 14 12 38 38 H 1.09002 * 111.00331 * 277.42780 * 15 14 12 39 39 H 1.09004 * 110.36627 * 81.83452 * 16 15 14 40 40 H 1.09002 * 110.36625 * 204.04562 * 16 15 14 41 41 H 1.08001 * 126.53183 * 0.03799 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.2281 1.1869 -0.0581 5 6 1.4576 2.3869 0.0748 6 7 0.1437 2.3953 -0.0030 7 14 2.3913 3.9919 0.2783 8 1 2.7164 4.5485 -1.0596 9 1 1.5521 4.9614 1.0273 10 1 3.6481 3.7417 1.0289 11 6 2.1975 -1.2686 0.0006 12 6 2.5103 -1.6764 1.4417 13 1 1.5919 -1.6975 2.0284 14 6 3.5084 -0.6778 2.0649 15 6 4.4296 -1.5920 2.9150 16 6 4.4987 -2.8665 2.0372 17 7 3.1491 -3.0004 1.4594 18 6 2.5929 -4.1469 1.0203 19 8 1.5018 -4.1268 0.4835 20 6 3.3070 -5.4252 1.1909 21 6 2.8683 -6.6541 0.8045 22 8 3.8223 -7.5353 1.1453 23 6 4.8214 -6.8641 1.7355 24 6 6.0875 -7.4794 2.2737 25 9 5.8995 -7.8366 3.6132 26 9 6.4060 -8.6189 1.5274 27 9 7.1322 -6.5536 2.1802 28 7 4.5261 -5.5992 1.7695 29 1 -0.3634 0.4807 -0.9083 30 1 -0.3633 -1.0270 0.0378 31 1 -0.3633 0.5463 0.8704 32 1 -0.3399 3.2345 0.0496 33 1 1.5887 -2.0400 -0.4712 34 1 3.1285 -1.1509 -0.5539 35 1 4.0801 -0.1690 1.2887 36 1 2.9892 0.0421 2.6976 37 1 5.4173 -1.1470 3.0363 38 1 3.9788 -1.8087 3.8835 39 1 5.2393 -2.7430 1.2469 40 1 4.7392 -3.7359 2.6490 41 1 1.9321 -6.8779 0.3146 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717368617.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:09 Heat of formation + Delta-G solvation = -105.550702 kcal Electronic energy + Delta-G solvation = -31214.573654 eV Core-core repulsion = 26297.626922 eV Total energy + Delta-G solvation = -4916.946731 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.86581 -48.39454 -48.35884 -44.17940 -39.92211 -37.40191 -35.72457 -35.22145 -32.07280 -31.45064 -31.24022 -28.96469 -27.35710 -25.90348 -25.34276 -24.76060 -22.82918 -22.41981 -21.20457 -20.75468 -19.61667 -19.34293 -19.07061 -18.50261 -17.46325 -17.34904 -16.90932 -16.73164 -16.02823 -15.21319 -15.14417 -15.09895 -14.74654 -14.66376 -14.46742 -14.46025 -14.39202 -14.20736 -13.61118 -13.50721 -13.31387 -13.04226 -12.76129 -12.63814 -12.16140 -12.00627 -11.79439 -11.64863 -11.15568 -10.91581 -10.73541 -10.60581 -10.48229 -10.27973 -10.15627 -10.04604 -9.90510 -9.69860 -9.60438 -8.59173 -8.37122 -6.85281 -5.60177 -3.02000 0.37984 1.01124 1.23314 2.13113 2.66695 2.96586 3.12401 3.39901 3.45522 3.47231 3.51427 3.57159 4.06236 4.22814 4.53030 4.62723 4.87660 4.93338 5.01709 5.21607 5.29721 5.45397 5.69112 5.70476 5.84210 5.96241 6.01571 6.14183 6.33604 6.34721 6.58926 6.59986 6.66864 6.81997 6.92090 6.98192 7.64735 7.72095 7.76167 7.99933 8.14108 8.42134 9.31089 9.94598 10.38941 11.39145 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.022286 B = 0.002603 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.075457 B =10752.683162 C =11611.510576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.169 3.831 2 N -0.606 5.606 3 C -0.241 4.241 4 H 0.074 0.926 5 C -0.006 4.006 6 N -0.916 5.916 7 Si 0.904 3.096 8 H -0.290 1.290 9 H -0.291 1.291 10 H -0.281 1.281 11 C 0.148 3.852 12 C 0.115 3.885 13 H 0.072 0.928 14 C -0.107 4.107 15 C -0.140 4.140 16 C 0.096 3.904 17 N -0.589 5.589 18 C 0.606 3.394 19 O -0.526 6.526 20 C -0.054 4.054 21 C 0.052 3.948 22 O -0.169 6.169 23 C 0.086 3.914 24 C 0.588 3.412 25 F -0.153 7.153 26 F -0.156 7.156 27 F -0.141 7.141 28 N -0.386 5.386 29 H 0.038 0.962 30 H -0.006 1.006 31 H 0.045 0.955 32 H 0.249 0.751 33 H 0.055 0.945 34 H 0.041 0.959 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.541 -21.732 6.088 25.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.329 5.329 3 C -0.370 4.370 4 H 0.092 0.908 5 C -0.202 4.202 6 N -0.564 5.564 7 Si 0.734 3.266 8 H -0.217 1.217 9 H -0.217 1.217 10 H -0.207 1.207 11 C 0.019 3.981 12 C 0.010 3.990 13 H 0.090 0.910 14 C -0.145 4.145 15 C -0.178 4.178 16 C -0.026 4.026 17 N -0.321 5.321 18 C 0.392 3.608 19 O -0.403 6.403 20 C -0.177 4.177 21 C -0.022 4.022 22 O -0.052 6.052 23 C -0.123 4.123 24 C 0.532 3.468 25 F -0.134 7.134 26 F -0.137 7.137 27 F -0.122 7.122 28 N -0.118 5.118 29 H 0.057 0.943 30 H 0.012 0.988 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 11.230 -21.191 6.038 24.731 hybrid contribution 0.222 0.385 -0.036 0.446 sum 11.453 -20.806 6.003 24.497 Atomic orbital electron populations 1.21059 0.81445 0.93210 1.01777 1.44006 1.02472 1.00308 1.86100 1.19292 0.90819 0.83578 1.43352 0.90779 1.24856 0.95637 0.97737 1.01952 1.70246 1.05165 1.24585 1.56434 0.86251 0.78701 0.83915 0.77691 1.21720 1.21721 1.20653 1.21055 0.96235 0.88822 0.92006 1.22853 0.95637 0.78675 1.01839 0.90968 1.22580 0.96318 0.96446 0.99150 1.22876 1.00872 0.95573 0.98472 1.22580 0.83583 0.99410 0.97069 1.48518 1.16998 1.07424 1.59169 1.16157 0.84311 0.80661 0.79677 1.90878 1.20081 1.85626 1.43764 1.22163 0.92685 0.96739 1.06094 1.25764 0.93185 0.86299 0.96935 1.84397 1.24440 1.38889 1.57468 1.25534 0.93734 0.87875 1.05203 1.15963 0.79388 0.75744 0.75737 1.93325 1.95018 1.91692 1.33408 1.93306 1.93157 1.50995 1.76292 1.93334 1.57410 1.65645 1.95812 1.70821 1.12950 1.14033 1.13988 0.94322 0.98769 0.93681 0.94021 0.92624 0.94102 0.90066 0.89839 0.90212 0.91236 0.91507 0.88890 0.73568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.40 8.99 59.85 0.54 4.93 16 2 N -0.61 -15.36 2.90 -181.12 -0.52 -15.88 16 3 C -0.24 -6.44 8.63 -15.06 -0.13 -6.57 16 4 H 0.07 1.90 6.90 -52.49 -0.36 1.54 16 5 C -0.01 -0.16 5.44 -17.43 -0.09 -0.25 16 6 N -0.92 -26.65 9.46 55.49 0.53 -26.12 16 7 Si 0.90 21.66 29.56 -169.99 -5.02 16.63 16 8 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 C 0.15 3.18 5.17 -4.04 -0.02 3.16 16 12 C 0.11 2.12 3.15 -66.95 -0.21 1.91 16 13 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 14 C -0.11 -1.80 5.46 -24.90 -0.14 -1.94 16 15 C -0.14 -1.81 7.08 -24.59 -0.17 -1.98 16 16 C 0.10 1.28 6.30 -2.53 -0.02 1.26 16 17 N -0.59 -9.41 3.06 -164.27 -0.50 -9.91 16 18 C 0.61 9.58 7.66 -12.52 -0.10 9.49 16 19 O -0.53 -9.72 15.70 5.26 0.08 -9.64 16 20 C -0.05 -0.67 6.82 -83.03 -0.57 -1.24 16 21 C 0.05 0.47 11.94 29.96 0.36 0.83 16 22 O -0.17 -1.52 10.70 6.49 0.07 -1.45 16 23 C 0.09 0.84 7.53 -13.08 -0.10 0.74 16 24 C 0.59 4.80 3.57 36.01 0.13 4.93 16 25 F -0.15 -1.24 17.30 2.25 0.04 -1.20 16 26 F -0.16 -1.20 17.28 2.25 0.04 -1.16 16 27 F -0.14 -1.22 17.23 2.25 0.04 -1.18 16 28 N -0.39 -4.50 8.27 -7.65 -0.06 -4.56 16 29 H 0.04 1.08 7.18 -51.93 -0.37 0.71 16 30 H -0.01 -0.15 7.78 -51.93 -0.40 -0.56 16 31 H 0.04 1.25 6.90 -51.93 -0.36 0.89 16 32 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.06 1.25 6.31 -51.93 -0.33 0.92 16 34 H 0.04 0.87 7.95 -51.93 -0.41 0.46 16 35 H 0.08 1.46 6.57 -51.93 -0.34 1.12 16 36 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.09 1.15 5.88 -51.93 -0.31 0.85 16 41 H 0.25 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 353.09 15.07 5.32 5.32 Total: -1.00 -31.06 353.09 -5.08 -36.14 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -4.56 Total: -2.26 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: -0.52 Total: 15.27 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -0.57 Total: -56.47 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.15 Total: -11.08 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.12 Total: -3.54 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.06 -5.08 -36.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717368617.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.415 kcal (2) G-P(sol) polarization free energy of solvation -31.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds