Wall clock time and date at job start Wed Apr 1 2020 04:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81407 * 109.47090 * 2 1 4 4 O 1.42098 * 110.54206 * 68.37397 * 3 2 1 5 5 O 1.42096 * 110.54006 * 291.62083 * 3 2 1 6 6 N 1.65596 * 104.44763 * 179.97438 * 3 2 1 7 7 C 1.46501 * 120.00294 * 65.00108 * 6 3 2 8 8 C 1.50696 * 109.47260 * 165.00236 * 7 6 3 9 9 O 1.21279 * 120.00153 * 359.97438 * 8 7 6 10 10 N 1.34772 * 119.99849 * 180.02562 * 8 7 6 11 11 C 1.46508 * 120.00083 * 179.97438 * 10 8 7 12 12 H 1.09004 * 110.72751 * 323.03279 * 11 10 8 13 13 C 1.54461 * 110.82786 * 86.44820 * 11 10 8 14 14 O 1.43516 * 107.58029 * 139.78458 * 13 11 10 15 15 C 1.42552 * 109.63550 * 0.62881 * 14 13 11 16 16 C 1.52950 * 116.16045 * 106.69550 * 15 14 13 17 17 N 1.47774 * 85.93767 * 140.97629 * 16 15 14 18 18 C 1.36938 * 134.40466 * 156.10703 * 17 16 15 19 19 H 1.08005 * 120.00357 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99749 * 180.02562 * 18 17 16 21 21 N 1.31620 * 119.99998 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99949 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47081 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47237 * 119.99845 * 22 20 18 25 25 H 1.48506 * 109.47038 * 240.00090 * 22 20 18 26 26 C 1.48026 * 91.08539 * 336.18978 * 17 16 15 27 27 C 1.54001 * 106.49052 * 336.97466 * 15 14 13 28 28 H 1.09000 * 109.47322 * 300.00429 * 1 2 3 29 29 H 1.09005 * 109.46870 * 60.00412 * 1 2 3 30 30 H 1.09007 * 109.47171 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47191 * 239.99982 * 2 1 3 32 32 H 1.09005 * 109.46870 * 119.99588 * 2 1 3 33 33 H 0.96998 * 119.99869 * 245.00070 * 6 3 2 34 34 H 1.08998 * 109.47033 * 44.99182 * 7 6 3 35 35 H 1.09005 * 109.46724 * 284.99743 * 7 6 3 36 36 H 0.97003 * 120.00280 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.82756 * 20.27475 * 13 11 10 38 38 H 1.09003 * 109.83470 * 259.29903 * 13 11 10 39 39 H 1.09002 * 113.81883 * 255.26095 * 16 15 14 40 40 H 1.09000 * 113.81720 * 26.69877 * 16 15 14 41 41 H 0.96996 * 119.99583 * 180.02562 * 21 20 18 42 42 H 1.08991 * 113.71103 * 269.58123 * 26 17 16 43 43 H 1.09005 * 113.99939 * 138.06957 * 26 17 16 44 44 H 1.09000 * 111.15362 * 153.02239 * 27 15 14 45 45 H 1.08997 * 111.15638 * 277.26358 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8385 2.3439 1.2370 5 8 1.8386 2.3438 -1.2370 6 7 3.7843 1.5653 0.0007 7 6 4.4676 0.9669 -1.1488 8 6 5.9402 1.2786 -1.0759 9 8 6.3760 1.9362 -0.1548 10 7 6.7727 0.8273 -2.0349 11 6 8.2042 1.1308 -1.9644 12 1 8.3668 2.1362 -1.5761 13 6 8.9459 0.0835 -1.1048 14 8 10.1952 -0.2016 -1.7511 15 6 10.3127 0.5845 -2.9345 16 6 11.2980 1.7527 -2.8730 17 7 11.6518 1.3902 -4.2612 18 6 12.1931 2.0688 -5.3204 19 1 12.4555 3.1113 -5.2167 20 6 12.4044 1.4166 -6.5275 21 7 12.0841 0.1462 -6.6540 22 14 13.1433 2.3419 -7.9722 23 1 13.4122 3.7472 -7.5746 24 1 14.4141 1.6905 -8.3795 25 1 12.1905 2.3239 -9.1111 26 6 11.1849 0.0019 -4.0476 27 6 8.8792 0.9591 -3.3545 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 4.2981 1.8766 0.7622 34 1 4.0545 1.3765 -2.0706 35 1 4.3237 -0.1135 -1.1348 36 1 6.4241 0.3016 -2.7718 37 1 8.3498 -0.8264 -1.0346 38 1 9.1284 0.4853 -0.1081 39 1 10.8196 2.7278 -2.7809 40 1 12.1093 1.6072 -2.1597 41 1 12.2321 -0.3095 -7.4974 42 1 11.9631 -0.6721 -3.6899 43 1 10.6169 -0.4083 -4.8827 44 1 8.8653 1.8930 -3.9164 45 1 8.4123 0.1539 -3.9217 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724888066.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:16 Heat of formation + Delta-G solvation = -87.495116 kcal Electronic energy + Delta-G solvation = -28421.979752 eV Core-core repulsion = 24183.116661 eV Total energy + Delta-G solvation = -4238.863091 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -40.52526 -39.44514 -37.54575 -36.43559 -36.37370 -35.22140 -34.67933 -33.72026 -32.13017 -30.69636 -28.37814 -27.18075 -25.83753 -24.97251 -24.63031 -22.18314 -21.87111 -20.81379 -19.86284 -18.83370 -18.61190 -17.58459 -16.94761 -16.83033 -16.61962 -16.42506 -15.92449 -15.50327 -15.31005 -15.11419 -14.83235 -14.65146 -14.04586 -13.91381 -13.78469 -13.60609 -13.35599 -13.06704 -13.02738 -12.57301 -12.54071 -12.45013 -12.39288 -12.16106 -12.14237 -11.72351 -11.52675 -11.17819 -11.16035 -10.97986 -10.87806 -10.78996 -10.34634 -10.27422 -10.06987 -10.01630 -9.63299 -9.30779 -8.92860 -8.79370 -6.96432 -5.83806 -3.16118 -0.26152 2.13831 2.22376 2.81166 3.31058 3.35470 3.41308 3.43639 3.67296 3.99318 4.10112 4.18251 4.24458 4.45274 4.52408 4.58102 4.64509 4.73364 4.96538 5.01769 5.05184 5.08728 5.11024 5.16046 5.26004 5.32487 5.36123 5.49277 5.75309 5.83287 6.04239 6.18560 6.24965 6.37584 6.50786 6.54138 6.63463 6.96839 7.15317 7.15975 7.44233 7.61951 7.83362 7.89584 8.97739 9.63695 10.51046 11.33983 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.021598 B = 0.001927 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.098400 B =14528.677789 C =15018.049194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.633 4.633 3 S 2.615 3.385 4 O -0.952 6.952 5 O -0.953 6.953 6 N -1.109 6.109 7 C 0.094 3.906 8 C 0.513 3.487 9 O -0.528 6.528 10 N -0.712 5.712 11 C 0.109 3.891 12 H 0.104 0.896 13 C 0.045 3.955 14 O -0.366 6.366 15 C 0.056 3.944 16 C 0.108 3.892 17 N -0.605 5.605 18 C -0.220 4.220 19 H 0.083 0.917 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.914 3.086 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.177 3.823 27 C -0.119 4.119 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.428 0.572 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.406 0.594 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.043 0.957 41 H 0.254 0.746 42 H 0.037 0.963 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.771 -4.537 12.572 26.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.762 4.762 3 S 2.706 3.294 4 O -0.942 6.942 5 O -0.942 6.942 6 N -0.872 5.872 7 C -0.036 4.036 8 C 0.297 3.703 9 O -0.404 6.404 10 N -0.365 5.365 11 C 0.004 3.996 12 H 0.122 0.878 13 C -0.034 4.034 14 O -0.283 6.283 15 C 0.015 3.985 16 C -0.019 4.019 17 N -0.333 5.333 18 C -0.347 4.347 19 H 0.100 0.900 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.744 3.256 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.052 3.948 27 C -0.157 4.157 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.267 0.733 34 H 0.131 0.869 35 H 0.115 0.885 36 H 0.241 0.759 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.097 0.903 44 H 0.115 0.885 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -22.748 -3.417 12.839 26.343 hybrid contribution 0.682 -0.437 -0.887 1.201 sum -22.066 -3.854 11.951 25.389 Atomic orbital electron populations 1.21518 0.90267 1.05258 1.03653 1.30519 1.07532 1.26315 1.11854 1.04986 0.72684 0.77270 0.74469 1.93629 1.82711 1.72837 1.45015 1.93620 1.83130 1.71919 1.45570 1.55411 1.25966 1.78019 1.27777 1.21113 0.91854 0.99586 0.91084 1.20370 0.88032 0.79517 0.82411 1.90728 1.77381 1.38616 1.33673 1.45876 1.07948 1.55618 1.27072 1.22723 0.78974 1.00378 0.97486 0.87765 1.23451 0.86142 0.97446 0.96338 1.88360 1.36406 1.64423 1.39121 1.24184 0.94430 0.93928 0.85910 1.22905 0.94781 0.95593 0.88571 1.45764 1.74030 1.07538 1.06011 1.19030 1.34306 0.93525 0.87865 0.89971 1.24800 1.01648 0.96099 0.97900 1.69818 1.52847 1.08973 1.25131 0.86022 0.78501 0.78731 0.82357 1.20417 1.21696 1.21667 1.22279 0.92714 0.88260 0.91571 1.22961 0.94156 1.03995 0.94584 0.90839 0.90782 0.89847 0.84931 0.84691 0.73321 0.86872 0.88499 0.75881 0.91646 0.91233 0.93590 0.93908 0.93588 0.94509 0.90281 0.88536 0.89753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 9.92 37.16 0.37 -0.17 16 2 C -0.63 -2.09 6.79 37.16 0.25 -1.83 16 3 S 2.61 18.82 5.46 -107.50 -0.59 18.23 16 4 O -0.95 -10.30 18.08 -57.54 -1.04 -11.34 16 5 O -0.95 -9.97 17.50 -57.54 -1.01 -10.97 16 6 N -1.11 -7.91 5.82 -11.66 -0.07 -7.97 16 7 C 0.09 0.55 6.61 -5.19 -0.03 0.52 16 8 C 0.51 4.97 7.90 -10.99 -0.09 4.88 16 9 O -0.53 -7.18 15.46 5.56 0.09 -7.10 16 10 N -0.71 -6.49 5.14 -51.79 -0.27 -6.76 16 11 C 0.11 1.38 3.28 -65.84 -0.22 1.16 16 12 H 0.10 1.45 7.71 -51.93 -0.40 1.05 16 13 C 0.04 0.61 7.57 37.92 0.29 0.89 16 14 O -0.37 -6.42 11.17 -35.23 -0.39 -6.82 16 15 C 0.06 1.04 1.48 -90.28 -0.13 0.91 16 16 C 0.11 2.23 8.42 -3.37 -0.03 2.20 16 17 N -0.60 -15.17 3.70 -181.92 -0.67 -15.85 16 18 C -0.22 -6.02 10.70 -15.06 -0.16 -6.18 16 19 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 20 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 21 N -0.92 -26.50 11.42 55.49 0.63 -25.87 16 22 Si 0.91 21.68 29.55 -169.99 -5.02 16.65 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 C 0.18 4.11 7.05 -3.23 -0.02 4.09 16 27 C -0.12 -1.78 6.03 -24.89 -0.15 -1.93 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.13 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.13 0.25 8.14 -51.92 -0.42 -0.17 16 33 H 0.43 3.49 7.66 -34.46 -0.26 3.23 16 34 H 0.11 0.54 7.70 -51.93 -0.40 0.14 16 35 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.41 2.48 8.52 -40.82 -0.35 2.13 16 37 H 0.07 0.78 8.02 -51.93 -0.42 0.37 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.05 0.88 8.11 -51.93 -0.42 0.46 16 40 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.08 1.95 7.19 -51.93 -0.37 1.58 16 44 H 0.10 1.56 8.05 -51.93 -0.42 1.14 16 45 H 0.08 1.15 7.99 -51.93 -0.41 0.73 16 LS Contribution 386.23 15.07 5.82 5.82 Total: -1.00 -37.89 386.23 -9.35 -47.23 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.81 Total: 0.50 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -0.02 Total: 4.23 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: -0.37 Total: -56.44 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -2.35 Total: -36.23 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 18.82 SS G_CDS: -0.59 Total: 18.23 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.89 -9.35 -47.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724888066.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.260 kcal (2) G-P(sol) polarization free energy of solvation -37.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds