Wall clock time and date at job start Wed Apr 1 2020 04:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81407 * 109.47090 * 2 1 4 4 O 1.42098 * 110.54206 * 68.37397 * 3 2 1 5 5 O 1.42096 * 110.54006 * 291.62083 * 3 2 1 6 6 N 1.65596 * 104.44763 * 179.97438 * 3 2 1 7 7 C 1.46501 * 120.00294 * 65.00108 * 6 3 2 8 8 C 1.50696 * 109.47260 * 165.00236 * 7 6 3 9 9 O 1.21279 * 120.00153 * 359.97438 * 8 7 6 10 10 N 1.34772 * 119.99849 * 180.02562 * 8 7 6 11 11 C 1.46508 * 120.00083 * 179.97438 * 10 8 7 12 12 H 1.09004 * 110.72751 * 323.03279 * 11 10 8 13 13 C 1.54461 * 110.82786 * 86.44820 * 11 10 8 14 14 O 1.43516 * 107.58029 * 139.78458 * 13 11 10 15 15 C 1.42552 * 109.63550 * 0.62881 * 14 13 11 16 16 C 1.52950 * 116.16045 * 106.69550 * 15 14 13 17 17 N 1.47774 * 85.93767 * 140.97629 * 16 15 14 18 18 C 1.36938 * 134.40466 * 156.10703 * 17 16 15 19 19 H 1.08005 * 120.00357 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99749 * 180.02562 * 18 17 16 21 21 N 1.31620 * 119.99998 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99949 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47081 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47237 * 119.99845 * 22 20 18 25 25 H 1.48506 * 109.47038 * 240.00090 * 22 20 18 26 26 C 1.48026 * 91.08539 * 336.18978 * 17 16 15 27 27 C 1.54001 * 106.49052 * 336.97466 * 15 14 13 28 28 H 1.09000 * 109.47322 * 300.00429 * 1 2 3 29 29 H 1.09005 * 109.46870 * 60.00412 * 1 2 3 30 30 H 1.09007 * 109.47171 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47191 * 239.99982 * 2 1 3 32 32 H 1.09005 * 109.46870 * 119.99588 * 2 1 3 33 33 H 0.96998 * 119.99869 * 245.00070 * 6 3 2 34 34 H 1.08998 * 109.47033 * 44.99182 * 7 6 3 35 35 H 1.09005 * 109.46724 * 284.99743 * 7 6 3 36 36 H 0.97003 * 120.00280 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.82756 * 20.27475 * 13 11 10 38 38 H 1.09003 * 109.83470 * 259.29903 * 13 11 10 39 39 H 1.09002 * 113.81883 * 255.26095 * 16 15 14 40 40 H 1.09000 * 113.81720 * 26.69877 * 16 15 14 41 41 H 0.96996 * 119.99583 * 180.02562 * 21 20 18 42 42 H 1.08991 * 113.71103 * 269.58123 * 26 17 16 43 43 H 1.09005 * 113.99939 * 138.06957 * 26 17 16 44 44 H 1.09000 * 111.15362 * 153.02239 * 27 15 14 45 45 H 1.08997 * 111.15638 * 277.26358 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8385 2.3439 1.2370 5 8 1.8386 2.3438 -1.2370 6 7 3.7843 1.5653 0.0007 7 6 4.4676 0.9669 -1.1488 8 6 5.9402 1.2786 -1.0759 9 8 6.3760 1.9362 -0.1548 10 7 6.7727 0.8273 -2.0349 11 6 8.2042 1.1308 -1.9644 12 1 8.3668 2.1362 -1.5761 13 6 8.9459 0.0835 -1.1048 14 8 10.1952 -0.2016 -1.7511 15 6 10.3127 0.5845 -2.9345 16 6 11.2980 1.7527 -2.8730 17 7 11.6518 1.3902 -4.2612 18 6 12.1931 2.0688 -5.3204 19 1 12.4555 3.1113 -5.2167 20 6 12.4044 1.4166 -6.5275 21 7 12.0841 0.1462 -6.6540 22 14 13.1433 2.3419 -7.9722 23 1 13.4122 3.7472 -7.5746 24 1 14.4141 1.6905 -8.3795 25 1 12.1905 2.3239 -9.1111 26 6 11.1849 0.0019 -4.0476 27 6 8.8792 0.9591 -3.3545 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 4.2981 1.8766 0.7622 34 1 4.0545 1.3765 -2.0706 35 1 4.3237 -0.1135 -1.1348 36 1 6.4241 0.3016 -2.7718 37 1 8.3498 -0.8264 -1.0346 38 1 9.1284 0.4853 -0.1081 39 1 10.8196 2.7278 -2.7809 40 1 12.1093 1.6072 -2.1597 41 1 12.2321 -0.3095 -7.4974 42 1 11.9631 -0.6721 -3.6899 43 1 10.6169 -0.4083 -4.8827 44 1 8.8653 1.8930 -3.9164 45 1 8.4123 0.1539 -3.9217 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724888066.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:15 Heat of formation + Delta-G solvation = -120.594400 kcal Electronic energy + Delta-G solvation = -28423.415045 eV Core-core repulsion = 24183.116661 eV Total energy + Delta-G solvation = -4240.298383 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.67570 -40.54970 -38.20668 -37.92692 -37.04919 -35.95452 -35.55576 -34.13535 -33.98582 -31.79685 -29.99769 -27.95557 -27.36196 -26.72447 -24.91431 -23.92354 -22.88250 -21.72990 -20.42140 -20.31125 -19.23861 -18.77933 -18.21930 -17.75991 -17.30632 -17.23309 -16.94033 -16.60745 -16.48450 -16.33514 -16.04802 -15.57775 -15.27412 -14.99512 -14.53474 -14.46482 -14.26491 -14.11630 -13.91212 -13.67743 -13.42150 -13.34528 -13.23594 -13.14249 -13.08402 -12.89653 -12.82371 -12.64324 -12.55201 -12.37354 -12.34924 -11.94111 -11.73599 -11.57809 -11.53525 -11.14201 -10.89682 -10.51037 -10.34259 -10.18631 -8.97810 -7.92911 -5.26875 -0.75441 1.47360 1.48138 1.49637 1.58408 1.60879 2.07929 2.43443 2.83702 2.86248 3.23294 3.24046 3.31611 3.47080 3.53602 3.71663 3.75069 3.81361 3.96998 4.04842 4.08724 4.28334 4.36249 4.44334 4.57290 4.63307 4.69691 4.75920 4.77926 4.80485 4.87980 4.90563 4.95744 5.02589 5.15872 5.16854 5.23228 5.38897 5.47879 5.86559 5.92621 6.18332 6.47265 6.89231 7.13398 7.56817 8.50877 9.24802 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.021598 B = 0.001927 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.098400 B =14528.677789 C =15018.049194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.602 4.602 3 S 2.614 3.386 4 O -0.999 6.999 5 O -0.994 6.994 6 N -1.115 6.115 7 C 0.091 3.909 8 C 0.511 3.489 9 O -0.572 6.572 10 N -0.700 5.700 11 C 0.126 3.874 12 H 0.091 0.909 13 C 0.042 3.958 14 O -0.381 6.381 15 C 0.079 3.921 16 C 0.104 3.896 17 N -0.629 5.629 18 C -0.233 4.233 19 H 0.085 0.915 20 C -0.063 4.063 21 N -0.950 5.950 22 Si 0.980 3.020 23 H -0.267 1.267 24 H -0.294 1.294 25 H -0.288 1.288 26 C 0.173 3.827 27 C -0.110 4.110 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.166 0.834 32 H 0.159 0.841 33 H 0.423 0.577 34 H 0.127 0.873 35 H 0.150 0.850 36 H 0.424 0.576 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.040 0.960 41 H 0.251 0.749 42 H 0.012 0.988 43 H 0.060 0.940 44 H 0.085 0.915 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.687 -5.734 12.610 28.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.736 4.736 3 S 2.711 3.289 4 O -0.990 6.990 5 O -0.984 6.984 6 N -0.877 5.877 7 C -0.038 4.038 8 C 0.297 3.703 9 O -0.450 6.450 10 N -0.355 5.355 11 C 0.020 3.980 12 H 0.109 0.891 13 C -0.035 4.035 14 O -0.299 6.299 15 C 0.038 3.962 16 C -0.021 4.021 17 N -0.358 5.358 18 C -0.361 4.361 19 H 0.103 0.897 20 C -0.256 4.256 21 N -0.599 5.599 22 Si 0.808 3.192 23 H -0.191 1.191 24 H -0.221 1.221 25 H -0.214 1.214 26 C 0.047 3.953 27 C -0.148 4.148 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.123 0.877 31 H 0.184 0.816 32 H 0.177 0.823 33 H 0.260 0.740 34 H 0.145 0.855 35 H 0.168 0.832 36 H 0.262 0.738 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.030 0.970 43 H 0.078 0.922 44 H 0.104 0.896 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -24.678 -4.573 12.879 28.209 hybrid contribution 1.257 -0.143 -0.813 1.504 sum -23.421 -4.716 12.065 26.765 Atomic orbital electron populations 1.21717 0.90433 1.06563 1.03612 1.30282 1.07171 1.21419 1.14767 1.04809 0.72392 0.79058 0.72670 1.93562 1.83332 1.75487 1.46571 1.93561 1.83623 1.74566 1.46677 1.55326 1.25787 1.78643 1.27915 1.21444 0.88519 1.02730 0.91146 1.21049 0.89511 0.78333 0.81409 1.90721 1.78393 1.40485 1.35439 1.45696 1.06298 1.55699 1.27776 1.22302 0.80943 0.99507 0.95281 0.89088 1.23659 0.84899 0.98913 0.96061 1.88329 1.38735 1.64173 1.38680 1.23658 0.95510 0.91847 0.85137 1.23038 0.95368 0.97359 0.86338 1.46061 1.73995 1.08410 1.07300 1.19388 1.33898 0.93979 0.88852 0.89730 1.25621 1.02561 0.97020 1.00436 1.69989 1.54080 1.10333 1.25476 0.84989 0.77207 0.77990 0.78973 1.19146 1.22141 1.21435 1.22153 0.92925 0.87416 0.92786 1.22843 0.92079 1.03960 0.95947 0.91277 0.90837 0.87693 0.81564 0.82341 0.74017 0.85512 0.83242 0.73755 0.89180 0.91022 0.91977 0.94260 0.94016 0.96966 0.92156 0.89635 0.88015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.70 9.92 71.98 0.71 0.01 16 2 C -0.60 -1.58 6.79 71.98 0.49 -1.10 16 3 S 2.61 34.26 5.46 -56.49 -0.31 33.95 16 4 O -1.00 -21.87 18.08 -127.65 -2.31 -24.17 16 5 O -0.99 -20.11 17.50 -127.65 -2.23 -22.34 16 6 N -1.12 -13.83 5.82 -190.79 -1.11 -14.94 16 7 C 0.09 0.75 6.61 85.63 0.57 1.31 16 8 C 0.51 8.60 7.90 87.66 0.69 9.30 16 9 O -0.57 -14.88 15.46 -3.03 -0.05 -14.93 16 10 N -0.70 -10.66 5.14 -436.15 -2.24 -12.91 16 11 C 0.13 2.93 3.28 46.34 0.15 3.08 16 12 H 0.09 2.43 7.71 -2.38 -0.02 2.41 16 13 C 0.04 1.06 7.57 72.48 0.55 1.61 16 14 O -0.38 -13.02 11.17 -148.98 -1.66 -14.68 16 15 C 0.08 2.93 1.48 -10.45 -0.02 2.92 16 16 C 0.10 4.33 8.42 86.12 0.73 5.05 16 17 N -0.63 -32.10 3.70 -735.05 -2.72 -34.83 16 18 C -0.23 -12.91 10.70 84.03 0.90 -12.01 16 19 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 20 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 21 N -0.95 -55.79 11.42 21.65 0.25 -55.54 16 22 Si 0.98 44.85 29.55 68.60 2.03 46.88 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 24 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 25 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 26 C 0.17 8.23 7.05 86.07 0.61 8.83 16 27 C -0.11 -3.14 6.03 31.79 0.19 -2.95 16 28 H 0.07 0.36 8.14 -2.39 -0.02 0.35 16 29 H 0.07 0.34 8.14 -2.38 -0.02 0.32 16 30 H 0.10 0.07 8.14 -2.38 -0.02 0.05 16 31 H 0.17 -0.58 8.14 -2.39 -0.02 -0.60 16 32 H 0.16 -0.18 8.14 -2.39 -0.02 -0.19 16 33 H 0.42 6.59 7.66 -96.75 -0.74 5.85 16 34 H 0.13 0.76 7.70 -2.39 -0.02 0.74 16 35 H 0.15 -0.33 8.14 -2.38 -0.02 -0.35 16 36 H 0.42 3.51 8.52 -92.71 -0.79 2.72 16 37 H 0.09 1.85 8.02 -2.39 -0.02 1.83 16 38 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.06 2.36 8.11 -2.39 -0.02 2.34 16 40 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 42 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.06 3.07 7.19 -2.38 -0.02 3.05 16 44 H 0.09 2.68 8.05 -2.39 -0.02 2.66 16 45 H 0.10 2.55 7.99 -2.39 -0.02 2.53 16 Total: -1.00 -85.95 386.23 -4.83 -90.79 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -0.51 Total: 9.72 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 6.04 Total: 13.01 kcal Atomic # 7 Polarization: -112.38 SS G_CDS: -5.83 Total: -118.21 kcal Atomic # 8 Polarization: -69.87 SS G_CDS: -6.25 Total: -76.12 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 16 Polarization: 34.26 SS G_CDS: -0.31 Total: 33.95 kcal Total: -85.95 -4.83 -90.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724888066.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.806 kcal (2) G-P(sol) polarization free energy of solvation -85.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds