Wall clock time and date at job start Wed Apr 1 2020 06:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42097 * 108.57930 * 2 1 4 4 O 1.42104 * 108.58139 * 228.97406 * 2 1 3 5 5 C 1.81399 * 101.92348 * 114.48741 * 2 1 3 6 6 C 1.50702 * 109.47268 * 179.97438 * 5 2 1 7 7 O 1.21279 * 119.99811 * 0.02562 * 6 5 2 8 8 N 1.34773 * 119.99587 * 179.97438 * 6 5 2 9 9 C 1.46510 * 119.99720 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.46962 * 180.02562 * 9 8 6 11 11 H 1.08998 * 110.63093 * 51.89623 * 10 9 8 12 12 C 1.55140 * 110.85394 * 288.68448 * 10 9 8 13 13 C 1.54908 * 101.65271 * 205.89507 * 12 10 9 14 14 N 1.47844 * 104.79422 * 37.07172 * 13 12 10 15 15 C 1.46896 * 111.00138 * 213.63597 * 14 13 12 16 16 C 1.50700 * 109.46942 * 290.84301 * 15 14 13 17 17 O 1.21293 * 120.00282 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00075 * 179.97438 * 16 15 14 19 19 C 1.37104 * 120.00173 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99666 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00001 * 180.27893 * 19 18 16 22 22 N 1.31414 * 119.99893 * 359.72318 * 21 19 18 23 23 Si 1.86801 * 119.99957 * 179.72309 * 21 19 18 24 24 H 1.48494 * 109.47230 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.46780 * 119.99924 * 23 21 19 26 26 H 1.48495 * 109.46909 * 239.99525 * 23 21 19 27 27 C 1.47437 * 108.56814 * 335.90519 * 14 13 12 28 28 H 1.09001 * 109.47284 * 305.51140 * 1 2 3 29 29 H 1.09000 * 109.47091 * 65.51129 * 1 2 3 30 30 H 1.08997 * 109.47386 * 185.51052 * 1 2 3 31 31 H 1.09007 * 109.46761 * 59.99787 * 5 2 1 32 32 H 1.09001 * 109.47033 * 299.99975 * 5 2 1 33 33 H 0.97002 * 120.00328 * 0.02562 * 8 6 5 34 34 H 1.09001 * 109.46566 * 60.00351 * 9 8 6 35 35 H 1.09001 * 109.47103 * 300.00334 * 9 8 6 36 36 H 1.09002 * 110.99406 * 323.98940 * 12 10 9 37 37 H 1.08998 * 110.99163 * 87.76804 * 12 10 9 38 38 H 1.09000 * 110.37552 * 278.24461 * 13 12 10 39 39 H 1.08998 * 110.37022 * 155.90018 * 13 12 10 40 40 H 1.08994 * 109.47346 * 170.84607 * 15 14 13 41 41 H 1.08998 * 109.47279 * 50.84279 * 15 14 13 42 42 H 0.97000 * 120.00140 * 0.02562 * 18 16 15 43 43 H 0.97004 * 119.99542 * 180.02562 * 22 21 19 44 44 H 1.09007 * 109.89457 * 120.39461 * 27 14 13 45 45 H 1.08998 * 109.88938 * 241.58346 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6152 6 6 3.6827 -0.8183 1.7951 7 8 4.4218 -0.4197 0.9201 8 7 4.1973 -1.3342 2.9289 9 6 5.6497 -1.4141 3.1041 10 6 5.9657 -2.0347 4.4664 11 1 5.4290 -2.9748 4.5939 12 6 5.6253 -1.0487 5.6148 13 6 6.5865 -1.5258 6.7319 14 7 7.8260 -1.9113 6.0243 15 6 8.4838 -3.0421 6.6926 16 6 9.0343 -2.5896 8.0204 17 8 8.8932 -1.4383 8.3750 18 7 9.6837 -3.4643 8.8141 19 6 10.1841 -3.0528 10.0224 20 1 10.0583 -2.0276 10.3380 21 6 10.8586 -3.9531 10.8380 22 7 11.0120 -5.2003 10.4536 23 14 11.5471 -3.3905 12.4808 24 1 11.2434 -1.9503 12.6777 25 1 10.9276 -4.1816 13.5742 26 1 13.0182 -3.5923 12.4960 27 6 7.4854 -2.2473 4.6297 28 1 -0.3634 0.5969 0.8365 29 1 -0.3633 0.4260 -0.9352 30 1 -0.3634 -1.0229 0.0987 31 1 1.7610 -1.7370 1.6664 32 1 1.7610 -0.1171 2.4042 33 1 3.6061 -1.6527 3.6289 34 1 6.0773 -0.4128 3.0525 35 1 6.0773 -2.0329 2.3152 36 1 5.8435 -0.0209 5.3245 37 1 4.5851 -1.1526 5.9232 38 1 6.1649 -2.3847 7.2541 39 1 6.7860 -0.7150 7.4326 40 1 9.2979 -3.4097 6.0680 41 1 7.7595 -3.8408 6.8527 42 1 9.7969 -4.3850 8.5305 43 1 11.4826 -5.8289 11.0232 44 1 8.0269 -1.5920 3.9474 45 1 7.7381 -3.2880 4.4267 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753121314.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:32 Heat of formation + Delta-G solvation = -167.063858 kcal Electronic energy + Delta-G solvation = -27590.389909 eV Core-core repulsion = 23348.076459 eV Total energy + Delta-G solvation = -4242.313450 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.11836 -40.52796 -39.26972 -37.97650 -36.97949 -36.32057 -35.83010 -33.49143 -33.12888 -31.66385 -30.41574 -29.97594 -28.55948 -26.49614 -25.28323 -22.51229 -21.87936 -21.37734 -20.97678 -19.88152 -19.78118 -18.59996 -18.12938 -17.72699 -17.34237 -17.08594 -16.82067 -16.49961 -16.42559 -16.27561 -16.05005 -15.59442 -15.51638 -14.92116 -14.66577 -14.54491 -14.27022 -13.94586 -13.87161 -13.81004 -13.55750 -13.49034 -13.19807 -13.04990 -13.00562 -12.98680 -12.86271 -12.41298 -12.36762 -12.15942 -12.11300 -12.06329 -11.88692 -11.66652 -11.64614 -11.48206 -11.35528 -10.30033 -10.23698 -9.99976 -9.17150 -8.46428 -5.94899 -1.01251 1.36392 1.36860 1.41611 1.55662 1.85641 1.94376 2.06873 2.28954 2.83546 2.94456 3.13160 3.20472 3.38289 3.50100 3.59905 3.64753 3.90766 4.00377 4.15081 4.27794 4.31005 4.33135 4.34506 4.35604 4.37868 4.49681 4.55325 4.63555 4.76604 4.84336 4.96213 5.02532 5.04653 5.18825 5.23027 5.36947 5.41429 5.90594 6.07190 6.17039 6.30122 6.61860 7.02760 7.14053 7.57665 8.14030 8.71227 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.045819 B = 0.001484 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.948534 B =18860.547629 C =19006.965197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.628 4.628 2 S 2.430 3.570 3 O -0.987 6.987 4 O -0.986 6.986 5 C -0.642 4.642 6 C 0.523 3.477 7 O -0.588 6.588 8 N -0.700 5.700 9 C 0.131 3.869 10 C -0.104 4.104 11 H 0.109 0.891 12 C -0.114 4.114 13 C 0.050 3.950 14 N -0.533 5.533 15 C 0.054 3.946 16 C 0.440 3.560 17 O -0.617 6.617 18 N -0.576 5.576 19 C -0.332 4.332 20 H 0.077 0.923 21 C -0.013 4.013 22 N -0.921 5.921 23 Si 0.992 3.008 24 H -0.275 1.275 25 H -0.270 1.270 26 H -0.272 1.272 27 C 0.047 3.953 28 H 0.162 0.838 29 H 0.137 0.863 30 H 0.164 0.836 31 H 0.208 0.792 32 H 0.206 0.794 33 H 0.424 0.576 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.103 0.897 38 H 0.042 0.958 39 H 0.052 0.948 40 H 0.106 0.894 41 H 0.073 0.927 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.078 0.922 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.196 1.720 -17.292 32.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.781 4.781 2 S 2.615 3.385 3 O -0.984 6.984 4 O -0.983 6.983 5 C -0.771 4.771 6 C 0.309 3.691 7 O -0.469 6.469 8 N -0.352 5.352 9 C 0.007 3.993 10 C -0.123 4.123 11 H 0.127 0.873 12 C -0.152 4.152 13 C -0.077 4.077 14 N -0.258 5.258 15 C -0.077 4.077 16 C 0.228 3.772 17 O -0.503 6.503 18 N -0.214 5.214 19 C -0.462 4.462 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.199 1.199 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.081 4.081 28 H 0.181 0.819 29 H 0.156 0.844 30 H 0.182 0.818 31 H 0.226 0.774 32 H 0.224 0.776 33 H 0.262 0.738 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.122 0.878 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.124 0.876 41 H 0.091 0.909 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -25.675 3.299 -18.195 31.641 hybrid contribution -0.172 -1.263 1.705 2.129 sum -25.847 2.036 -16.490 30.727 Atomic orbital electron populations 1.30102 1.19315 1.14757 1.13957 1.07291 0.80307 0.74127 0.76738 1.93534 1.81546 1.36795 1.86564 1.93531 1.81529 1.67838 1.55382 1.30759 0.99278 1.19945 1.27143 1.20015 0.89754 0.77016 0.82313 1.90885 1.62704 1.50079 1.43274 1.45710 1.08322 1.62280 1.18928 1.21319 0.80298 1.01132 0.96582 1.22521 0.96462 1.00060 0.93304 0.87333 1.22812 0.99810 0.99114 0.93419 1.22938 0.88392 0.99583 0.96837 1.63111 1.25241 1.35135 1.02318 1.21969 1.00090 0.92724 0.92934 1.20857 0.82763 0.85996 0.87629 1.90483 1.63118 1.20448 1.76239 1.41941 1.50123 1.12038 1.17269 1.19683 1.33691 0.97221 0.95573 0.90481 1.26012 0.97224 0.95023 1.02979 1.69678 1.42852 1.03917 1.39741 0.84878 0.78074 0.78152 0.77266 1.19930 1.19479 1.19724 1.22888 0.94782 1.01521 0.88933 0.81930 0.84436 0.81816 0.77447 0.77649 0.73802 0.92151 0.91069 0.91243 0.87815 0.93997 0.92905 0.87585 0.90950 0.77047 0.91345 0.90410 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 1.21 10.62 113.37 1.20 2.42 16 2 S 2.43 28.41 4.60 -56.49 -0.26 28.15 16 3 O -0.99 -22.74 17.95 -125.76 -2.26 -25.00 16 4 O -0.99 -22.16 17.95 -125.74 -2.26 -24.42 16 5 C -0.64 -2.17 6.29 71.24 0.45 -1.73 16 6 C 0.52 8.52 7.85 87.66 0.69 9.21 16 7 O -0.59 -16.96 15.62 -0.15 0.00 -16.96 16 8 N -0.70 -7.91 5.47 -463.04 -2.53 -10.44 16 9 C 0.13 2.09 4.97 86.38 0.43 2.52 16 10 C -0.10 -1.57 2.95 -9.61 -0.03 -1.59 16 11 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 12 C -0.11 -2.05 6.45 31.98 0.21 -1.85 16 13 C 0.05 1.45 5.75 86.77 0.50 1.95 16 14 N -0.53 -16.72 4.86 -890.13 -4.33 -21.04 16 15 C 0.05 1.84 5.05 85.56 0.43 2.27 16 16 C 0.44 21.00 7.58 87.66 0.66 21.66 16 17 O -0.62 -34.42 14.61 -3.07 -0.04 -34.46 16 18 N -0.58 -29.58 5.29 -306.98 -1.62 -31.20 16 19 C -0.33 -18.93 9.68 84.04 0.81 -18.12 16 20 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 21 C -0.01 -0.68 5.50 84.92 0.47 -0.22 16 22 N -0.92 -49.52 13.05 21.66 0.28 -49.24 16 23 Si 0.99 42.98 29.55 68.60 2.03 45.01 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 C 0.05 1.00 6.46 86.65 0.56 1.56 16 28 H 0.16 -1.23 8.14 -2.39 -0.02 -1.25 16 29 H 0.14 -0.16 8.14 -2.39 -0.02 -0.18 16 30 H 0.16 -1.30 8.14 -2.39 -0.02 -1.32 16 31 H 0.21 -1.34 8.14 -2.39 -0.02 -1.36 16 32 H 0.21 -1.20 8.14 -2.39 -0.02 -1.22 16 33 H 0.42 1.34 8.47 -92.71 -0.79 0.55 16 34 H 0.06 1.22 8.01 -2.39 -0.02 1.20 16 35 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.07 1.41 7.96 -2.39 -0.02 1.39 16 37 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.04 1.19 7.62 -2.39 -0.02 1.17 16 39 H 0.05 1.96 7.38 -2.39 -0.02 1.94 16 40 H 0.11 3.21 8.03 -2.39 -0.02 3.20 16 41 H 0.07 2.11 7.85 -2.39 -0.02 2.09 16 42 H 0.40 19.22 7.90 -92.71 -0.73 18.48 16 43 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 44 H 0.08 1.74 7.82 -2.38 -0.02 1.72 16 45 H 0.08 1.39 7.55 -2.39 -0.02 1.37 16 Total: -1.00 -99.59 388.61 -5.11 -104.70 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -0.49 Total: 16.81 kcal Atomic # 6 Polarization: 11.72 SS G_CDS: 6.38 Total: 18.10 kcal Atomic # 7 Polarization: -103.72 SS G_CDS: -8.20 Total: -111.93 kcal Atomic # 8 Polarization: -96.28 SS G_CDS: -4.56 Total: -100.84 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: 28.41 SS G_CDS: -0.26 Total: 28.15 kcal Total: -99.59 -5.11 -104.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753121314.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.364 kcal (2) G-P(sol) polarization free energy of solvation -99.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds