Wall clock time and date at job start Wed Apr 1 2020 05:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 120.00378 * 2 1 4 4 C 1.52997 * 109.46956 * 269.99956 * 3 2 1 5 5 H 1.08997 * 109.47406 * 305.00187 * 4 3 2 6 6 O 1.42896 * 109.47265 * 65.00200 * 4 3 2 7 7 C 1.53000 * 109.46967 * 184.99761 * 4 3 2 8 8 N 1.46501 * 109.47221 * 180.02562 * 7 4 3 9 9 C 1.36937 * 119.99938 * 179.72527 * 8 7 4 10 10 H 1.07997 * 120.00285 * 0.27548 * 9 8 7 11 11 C 1.38814 * 119.99801 * 180.27478 * 9 8 7 12 12 N 1.31620 * 120.00289 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00165 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46970 * 89.99898 * 13 11 9 15 15 H 1.48492 * 109.47606 * 210.00128 * 13 11 9 16 16 H 1.48502 * 109.47241 * 330.00489 * 13 11 9 17 17 C 1.34784 * 119.99766 * 180.02562 * 2 1 3 18 18 O 1.21505 * 120.00077 * 177.20920 * 17 2 1 19 19 C 1.48172 * 119.99864 * 357.20344 * 17 2 1 20 20 C 1.39305 * 119.72323 * 186.86897 * 19 17 2 21 21 C 1.38590 * 119.06085 * 179.71264 * 20 19 17 22 22 C 1.38623 * 118.48384 * 0.55684 * 21 20 19 23 23 C 1.38564 * 119.35443 * 359.72955 * 22 21 20 24 24 C 1.50706 * 119.54756 * 179.97438 * 23 22 21 25 25 F 1.39898 * 109.47011 * 184.97558 * 24 23 22 26 26 F 1.39892 * 109.47371 * 304.98020 * 24 23 22 27 27 F 1.39905 * 109.46881 * 64.98154 * 24 23 22 28 28 N 1.31518 * 120.90423 * 359.97438 * 23 22 21 29 29 H 1.08998 * 109.47137 * 96.10486 * 1 2 3 30 30 H 1.08995 * 109.47281 * 216.11028 * 1 2 3 31 31 H 1.09006 * 109.46510 * 336.10698 * 1 2 3 32 32 H 1.09003 * 109.47090 * 149.99714 * 3 2 1 33 33 H 1.08999 * 109.47036 * 30.00270 * 3 2 1 34 34 H 0.96709 * 114.00192 * 59.99269 * 6 4 3 35 35 H 1.09000 * 109.46922 * 60.00244 * 7 4 3 36 36 H 1.08997 * 109.47405 * 300.00427 * 7 4 3 37 37 H 0.96998 * 119.99880 * 0.02562 * 8 7 4 38 38 H 0.96993 * 120.00407 * 179.97438 * 12 11 9 39 39 H 1.08000 * 120.46712 * 359.97438 * 20 19 17 40 40 H 1.07994 * 120.75668 * 180.28607 * 21 20 19 41 41 H 1.08000 * 120.32422 * 179.75091 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 2.9642 0.9130 -1.9815 6 8 1.2062 1.9935 -2.0814 7 6 3.3239 2.9679 -1.4443 8 7 3.5676 3.3912 -2.8255 9 6 4.3235 4.5050 -3.0770 10 1 4.7436 5.0689 -2.2574 11 6 4.5496 4.9093 -4.3856 12 7 4.0372 4.2224 -5.3846 13 14 5.5800 6.4291 -4.7288 14 1 7.0066 6.0395 -4.8651 15 1 5.1184 7.0662 -5.9881 16 1 5.4345 7.3898 -3.6058 17 6 2.1389 -1.1673 -0.0005 18 8 3.3529 -1.1680 -0.0518 19 6 1.3993 -2.4497 0.0615 20 6 2.1001 -3.6450 0.2054 21 6 1.3942 -4.8360 0.2679 22 6 0.0120 -4.7910 0.1726 23 6 -0.6192 -3.5664 0.0245 24 6 -2.1216 -3.5124 -0.0802 25 9 -2.5243 -2.1973 -0.3361 26 9 -2.5465 -4.3417 -1.1237 27 9 -2.6888 -3.9482 1.1222 28 7 0.0750 -2.4504 -0.0261 29 1 -0.3633 -0.1093 -1.0218 30 1 -0.3633 -0.8302 0.6056 31 1 -0.3632 0.9397 0.4163 32 1 3.1500 1.1383 0.5139 33 1 1.6086 2.0283 0.5139 34 1 0.6956 2.6950 -1.6541 35 1 4.2747 2.7519 -0.9570 36 1 2.8123 3.7652 -0.9053 37 1 3.1900 2.8849 -3.5617 38 1 4.1949 4.5051 -6.2989 39 1 3.1781 -3.6432 0.2715 40 1 1.9094 -5.7780 0.3838 41 1 -0.5674 -5.7015 0.2137 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755791296.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:49 Heat of formation + Delta-G solvation = -183.746073 kcal Electronic energy + Delta-G solvation = -30547.127520 eV Core-core repulsion = 25626.789983 eV Total energy + Delta-G solvation = -4920.337537 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -51.22147 -48.74614 -48.68650 -42.11493 -40.47875 -38.83114 -36.60057 -35.85959 -34.03730 -33.57054 -33.17486 -30.95220 -28.03291 -27.85172 -27.34816 -25.59901 -24.40004 -23.66963 -22.74948 -21.39343 -19.64787 -19.61039 -19.31838 -19.25664 -18.50106 -17.81659 -17.43073 -17.25930 -16.93252 -16.61735 -16.40445 -16.27023 -15.76933 -15.52269 -15.45425 -15.13232 -15.12289 -14.93942 -14.85103 -14.82623 -14.78302 -14.51701 -14.28089 -13.97589 -13.87368 -13.62135 -13.36744 -13.01452 -12.94376 -12.77075 -12.57927 -12.19859 -12.05486 -11.83650 -11.61311 -11.27911 -11.17015 -10.99406 -10.68570 -10.49439 -9.62782 -9.03514 -7.95618 -5.26301 -0.71273 -0.26071 1.29567 1.42361 1.45754 1.48789 1.57156 1.77755 2.36447 2.41622 2.54709 2.72291 3.13692 3.29415 3.35229 3.46465 3.59447 3.67040 3.73402 3.78069 3.95305 4.02218 4.14358 4.21140 4.34025 4.49063 4.52321 4.65359 4.77085 4.82726 4.87759 4.90405 5.11292 5.17549 5.27296 5.44503 5.46901 6.07874 6.24623 6.25324 6.85937 6.90041 7.30833 8.06531 8.29797 9.28020 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.019611 B = 0.002230 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.400948 B =12553.397046 C =13096.789166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.584 5.584 3 C 0.094 3.906 4 C 0.103 3.897 5 H 0.063 0.937 6 O -0.563 6.563 7 C 0.125 3.875 8 N -0.743 5.743 9 C -0.248 4.248 10 H 0.080 0.920 11 C -0.080 4.080 12 N -0.972 5.972 13 Si 0.979 3.021 14 H -0.287 1.287 15 H -0.295 1.295 16 H -0.265 1.265 17 C 0.556 3.444 18 O -0.564 6.564 19 C 0.065 3.935 20 C -0.083 4.083 21 C -0.057 4.057 22 C -0.088 4.088 23 C 0.011 3.989 24 C 0.527 3.473 25 F -0.171 7.171 26 F -0.169 7.169 27 F -0.167 7.167 28 N -0.425 5.425 29 H 0.048 0.952 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.120 0.880 34 H 0.384 0.616 35 H 0.027 0.973 36 H 0.042 0.958 37 H 0.373 0.627 38 H 0.251 0.749 39 H 0.163 0.837 40 H 0.201 0.799 41 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.941 -23.384 18.912 33.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.313 5.313 3 C -0.030 4.030 4 C 0.042 3.958 5 H 0.081 0.919 6 O -0.370 6.370 7 C -0.002 4.002 8 N -0.385 5.385 9 C -0.379 4.379 10 H 0.097 0.903 11 C -0.272 4.272 12 N -0.622 5.622 13 Si 0.808 3.192 14 H -0.214 1.214 15 H -0.221 1.221 16 H -0.190 1.190 17 C 0.343 3.657 18 O -0.443 6.443 19 C -0.074 4.074 20 C -0.104 4.104 21 C -0.082 4.082 22 C -0.108 4.108 23 C -0.130 4.130 24 C 0.472 3.528 25 F -0.152 7.152 26 F -0.150 7.150 27 F -0.149 7.149 28 N -0.137 5.137 29 H 0.067 0.933 30 H 0.124 0.876 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.138 0.862 34 H 0.232 0.768 35 H 0.045 0.955 36 H 0.060 0.940 37 H 0.205 0.795 38 H 0.060 0.940 39 H 0.181 0.819 40 H 0.218 0.782 41 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -13.496 -22.854 18.465 32.333 hybrid contribution 0.466 0.598 -0.594 0.964 sum -13.030 -22.256 17.871 31.376 Atomic orbital electron populations 1.22466 0.76307 1.04346 1.02833 1.47737 1.08982 1.04885 1.69695 1.22242 0.99218 0.85433 0.96071 1.22203 0.84599 0.95594 0.93359 0.91860 1.86597 1.32190 1.59952 1.58235 1.21420 0.97151 0.94806 0.86862 1.42477 1.61763 1.31523 1.02775 1.19686 1.23220 1.02805 0.92233 0.90259 1.25687 1.03113 1.02886 0.95506 1.69865 1.51113 1.42857 0.98381 0.85055 0.77946 0.78999 0.77224 1.21428 1.22129 1.18984 1.18275 0.86397 0.83972 0.77038 1.90798 1.14112 1.87237 1.52198 1.20970 0.88916 0.94594 1.02913 1.22594 1.03506 0.91553 0.92734 1.22168 0.92823 0.99729 0.93494 1.22478 0.96683 0.98201 0.93424 1.21276 0.93297 0.92150 1.06234 1.17791 0.86743 0.74101 0.74170 1.93233 1.91881 1.36243 1.93855 1.93245 1.91189 1.72176 1.58424 1.93252 1.86503 1.89522 1.45577 1.67542 1.07821 1.29155 1.09206 0.93348 0.87643 0.89880 0.89167 0.86202 0.76754 0.95466 0.94025 0.79495 0.94022 0.81896 0.78181 0.79568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.77 8.99 127.77 1.15 2.92 16 2 N -0.58 -15.25 2.84 -849.82 -2.41 -17.66 16 3 C 0.09 2.46 5.08 86.38 0.44 2.90 16 4 C 0.10 3.62 3.30 30.59 0.10 3.72 16 5 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 6 O -0.56 -19.75 12.64 -148.98 -1.88 -21.64 16 7 C 0.13 5.10 5.92 86.38 0.51 5.61 16 8 N -0.74 -40.13 5.49 -343.45 -1.89 -42.01 16 9 C -0.25 -14.39 9.99 84.03 0.84 -13.55 16 10 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 11 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 12 N -0.97 -62.49 13.06 21.65 0.28 -62.21 16 13 Si 0.98 47.47 29.55 68.60 2.03 49.50 16 14 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 15 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 16 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 17 C 0.56 15.87 7.66 86.88 0.67 16.54 16 18 O -0.56 -19.48 15.95 -3.73 -0.06 -19.54 16 19 C 0.06 1.42 6.63 41.91 0.28 1.70 16 20 C -0.08 -1.26 9.63 22.61 0.22 -1.04 16 21 C -0.06 -0.40 10.17 22.45 0.23 -0.18 16 22 C -0.09 -0.73 9.61 22.44 0.22 -0.52 16 23 C 0.01 0.18 6.26 42.69 0.27 0.44 16 24 C 0.53 8.17 3.31 71.24 0.24 8.40 16 25 F -0.17 -3.30 16.85 44.97 0.76 -2.55 16 26 F -0.17 -2.57 17.16 44.97 0.77 -1.80 16 27 F -0.17 -2.35 17.28 44.97 0.78 -1.58 16 28 N -0.42 -8.65 5.39 -173.07 -0.93 -9.59 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.11 2.17 5.20 -3.74 -0.02 2.15 16 31 H 0.08 1.39 7.83 -2.38 -0.02 1.37 16 32 H 0.09 2.49 7.46 -2.39 -0.02 2.47 16 33 H 0.12 2.30 7.85 -2.39 -0.02 2.28 16 34 H 0.38 10.34 9.05 -74.05 -0.67 9.67 16 35 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.37 22.20 7.54 -92.71 -0.70 21.50 16 38 H 0.25 15.56 8.31 -92.71 -0.77 14.79 16 39 H 0.16 2.34 7.66 -2.91 -0.02 2.32 16 40 H 0.20 -0.31 8.06 -2.91 -0.02 -0.33 16 41 H 0.19 0.24 8.06 -2.91 -0.02 0.21 16 Total: -1.00 -79.81 366.99 2.79 -77.02 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: -0.26 Total: 29.41 kcal Atomic # 6 Polarization: 17.02 SS G_CDS: 5.61 Total: 22.64 kcal Atomic # 7 Polarization: -126.52 SS G_CDS: -4.95 Total: -131.46 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -1.94 Total: -41.17 kcal Atomic # 9 Polarization: -8.23 SS G_CDS: 2.31 Total: -5.92 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -79.81 2.79 -77.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755791296.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.729 kcal (2) G-P(sol) polarization free energy of solvation -79.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds