Wall clock time and date at job start Wed Apr 1 2020 04:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99765 * 2 1 4 4 H 1.48505 * 109.47106 * 270.00360 * 3 2 1 5 5 H 1.48497 * 109.47299 * 30.00689 * 3 2 1 6 6 H 1.48504 * 109.46900 * 150.00551 * 3 2 1 7 7 C 1.38814 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00204 * 196.89938 * 7 2 1 9 9 N 1.36940 * 119.99790 * 16.90376 * 7 2 1 10 10 C 1.47150 * 120.98513 * 26.26154 * 9 7 2 11 11 C 1.53292 * 108.38481 * 129.44116 * 10 9 7 12 12 O 1.42962 * 109.26451 * 52.28100 * 11 10 9 13 13 C 1.42965 * 114.16676 * 297.50074 * 12 11 10 14 14 H 1.08994 * 109.51156 * 302.54827 * 13 12 11 15 15 C 1.52998 * 109.50860 * 182.44385 * 13 12 11 16 16 N 1.46505 * 109.47019 * 65.10533 * 15 13 12 17 17 C 1.34773 * 119.99906 * 179.97438 * 16 15 13 18 18 O 1.21596 * 120.00375 * 359.97438 * 17 16 15 19 19 C 1.47550 * 120.00104 * 179.97438 * 17 16 15 20 20 C 1.46398 * 120.24888 * 0.02562 * 19 17 16 21 21 C 1.35596 * 119.10439 * 179.97438 * 20 19 17 22 22 C 1.41172 * 119.48271 * 359.97438 * 21 20 19 23 23 N 1.32063 * 132.79158 * 180.02562 * 22 21 20 24 24 N 1.28588 * 109.71753 * 180.02562 * 23 22 21 25 25 C 1.31094 * 110.35399 * 359.97438 * 24 23 22 26 26 O 1.35687 * 126.33393 * 179.97438 * 25 24 23 27 27 N 1.36528 * 107.33184 * 0.02562 * 25 24 23 28 28 C 1.36027 * 133.10691 * 179.97438 * 27 25 24 29 29 C 1.47156 * 120.97815 * 206.24094 * 9 7 2 30 30 H 0.96999 * 120.00329 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.68061 * 249.16875 * 10 9 7 32 32 H 1.09007 * 109.67835 * 9.68280 * 10 9 7 33 33 H 1.09007 * 109.51231 * 172.22409 * 11 10 9 34 34 H 1.08999 * 109.51675 * 292.33005 * 11 10 9 35 35 H 1.09000 * 109.47739 * 305.10433 * 15 13 12 36 36 H 1.09005 * 109.47004 * 185.09901 * 15 13 12 37 37 H 0.96997 * 119.99778 * 359.97438 * 16 15 13 38 38 H 1.08000 * 120.44932 * 359.97438 * 20 19 17 39 39 H 1.08004 * 120.25870 * 179.97438 * 21 20 19 40 40 H 0.96703 * 113.99999 * 90.02945 * 26 25 24 41 41 H 1.07999 * 119.79008 * 359.96490 * 28 27 25 42 42 H 1.08993 * 109.67711 * 110.83529 * 29 9 7 43 43 H 1.08995 * 109.68090 * 350.27480 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2225 0.2713 9 7 1.3699 -2.3623 -0.3459 10 6 0.1977 -2.3448 -1.2352 11 6 0.4254 -3.3659 -2.3556 12 8 0.7667 -4.6293 -1.7801 13 6 1.9822 -4.6204 -1.0274 14 1 2.8019 -4.2867 -1.6636 15 6 2.2754 -6.0314 -0.5138 16 7 2.5323 -6.9208 -1.6493 17 6 2.8159 -8.2210 -1.4361 18 8 2.8590 -8.6559 -0.3014 19 6 3.0740 -9.1169 -2.5797 20 6 3.0240 -8.5992 -3.9482 21 6 3.2655 -9.4429 -4.9818 22 6 3.5597 -10.7982 -4.7182 23 7 3.8312 -11.8262 -5.5016 24 7 4.0332 -12.8754 -4.7862 25 6 3.9061 -12.5905 -3.5130 26 8 4.0502 -13.4554 -2.4774 27 7 3.6009 -11.2629 -3.4217 28 6 3.3612 -10.4344 -2.3698 29 6 1.8342 -3.6635 0.1610 30 1 -0.4850 0.8400 0.0004 31 1 -0.6954 -2.6123 -0.6706 32 1 0.0768 -1.3497 -1.6636 33 1 -0.4856 -3.4687 -2.9452 34 1 1.2384 -3.0268 -2.9976 35 1 1.4173 -6.3991 0.0488 36 1 3.1516 -6.0074 0.1343 37 1 2.4982 -6.5739 -2.5544 38 1 2.7978 -7.5592 -4.1320 39 1 3.2331 -9.0809 -5.9988 40 1 4.9526 -13.5115 -2.1345 41 1 3.3984 -10.8218 -1.3624 42 1 1.1057 -4.0637 0.8661 43 1 2.7973 -3.5419 0.6566 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035546221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:39 Heat of formation + Delta-G solvation = 30.154774 kcal Electronic energy + Delta-G solvation = -29433.376183 eV Core-core repulsion = 25096.463574 eV Total energy + Delta-G solvation = -4336.912609 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.06813 -40.31028 -38.73047 -38.33472 -37.90402 -35.25680 -34.50713 -34.19305 -32.11510 -31.49575 -30.68723 -29.49287 -27.76424 -26.18108 -24.62667 -24.25336 -23.27847 -23.05271 -22.01736 -21.33437 -20.05997 -19.67120 -18.66300 -17.81447 -17.68563 -17.10650 -16.92969 -16.23951 -16.02218 -15.48239 -15.45841 -15.13713 -15.01432 -14.64227 -14.48003 -14.06994 -13.90673 -13.35215 -13.25326 -13.09104 -13.07667 -12.82354 -12.71676 -12.51031 -12.19440 -11.69660 -11.68079 -11.21198 -10.99195 -10.95067 -10.83721 -10.54151 -10.43294 -10.32802 -10.10175 -10.07729 -9.78327 -9.28179 -9.19490 -8.70111 -8.63510 -6.86069 -5.93160 -3.37472 -0.10752 0.24796 1.26703 1.77256 2.39394 2.75094 3.01115 3.15072 3.28215 3.35474 3.36847 3.52707 3.88605 3.89095 4.08426 4.21682 4.28610 4.34910 4.67923 4.94593 4.98717 5.20040 5.24174 5.25881 5.32060 5.37338 5.39174 5.59279 5.65561 5.67739 5.86642 5.92135 6.01461 6.11874 6.24922 6.27131 6.36919 6.63338 6.66002 6.99301 7.19016 7.42119 7.61680 7.72138 7.84139 7.87972 8.23970 9.02044 9.64579 10.20760 11.14933 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.028084 B = 0.001879 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.761106 B =14901.307385 C =15274.054398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.258 4.258 8 H 0.070 0.930 9 N -0.593 5.593 10 C 0.138 3.862 11 C 0.040 3.960 12 O -0.390 6.390 13 C 0.064 3.936 14 H 0.060 0.940 15 C 0.129 3.871 16 N -0.706 5.706 17 C 0.568 3.432 18 O -0.537 6.537 19 C -0.149 4.149 20 C -0.062 4.062 21 C -0.078 4.078 22 C 0.215 3.785 23 N -0.269 5.269 24 N -0.236 5.236 25 C 0.322 3.678 26 O -0.426 6.426 27 N -0.406 5.406 28 C 0.140 3.860 29 C 0.122 3.878 30 H 0.256 0.744 31 H 0.029 0.971 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.404 0.596 38 H 0.158 0.842 39 H 0.170 0.830 40 H 0.408 0.592 41 H 0.187 0.813 42 H 0.031 0.969 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.648 -18.639 -7.820 21.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.387 4.387 8 H 0.087 0.913 9 N -0.317 5.317 10 C 0.013 3.987 11 C -0.038 4.038 12 O -0.310 6.310 13 C 0.004 3.996 14 H 0.078 0.922 15 C 0.006 3.994 16 N -0.356 5.356 17 C 0.353 3.647 18 O -0.415 6.415 19 C -0.156 4.156 20 C -0.087 4.087 21 C -0.099 4.099 22 C -0.035 4.035 23 N -0.116 5.116 24 N -0.086 5.086 25 C 0.023 3.977 26 O -0.225 6.225 27 N -0.099 5.099 28 C 0.016 3.984 29 C -0.006 4.006 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.060 0.940 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.240 0.760 38 H 0.175 0.825 39 H 0.187 0.813 40 H 0.266 0.734 41 H 0.204 0.796 42 H 0.048 0.952 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.169 -20.134 -8.237 22.905 hybrid contribution 0.690 2.047 1.032 2.394 sum 7.858 -18.087 -7.205 20.996 Atomic orbital electron populations 1.70026 1.05285 1.25783 1.53479 1.25063 0.95368 0.98553 1.00622 0.86230 0.79083 0.83335 0.77753 1.21331 1.21642 1.20351 1.19198 0.92656 0.84420 1.42406 0.91266 1.44069 1.33582 1.00966 1.53108 1.21456 0.89149 0.98382 0.89746 1.23335 0.99086 0.84760 0.96608 1.87786 1.41241 1.32685 1.69259 1.22820 0.87686 0.93597 0.95539 0.92186 1.21542 1.02088 0.87819 0.87948 1.45809 1.69952 1.08451 1.11433 1.17503 0.77593 0.82107 0.87458 1.90839 1.52194 1.75584 1.22887 1.20622 1.07086 0.93085 0.94823 1.22346 0.95876 1.00798 0.89657 1.20230 1.01150 0.86763 1.01781 1.22177 1.04278 0.97336 0.79729 1.74981 1.19620 0.93710 1.23328 1.74559 1.16191 1.20105 0.97755 1.21877 1.07868 0.78563 0.89420 1.85030 1.35863 1.56205 1.45411 1.44030 1.47208 1.09687 1.08948 1.21765 0.94970 0.89267 0.92426 1.21434 0.99052 0.87259 0.92835 0.93413 0.95313 0.88700 0.89943 0.94023 0.90132 0.89613 0.75975 0.82479 0.81309 0.73429 0.79620 0.95153 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.03 11.14 55.49 0.62 -24.41 16 2 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 3 Si 0.91 20.66 29.59 -169.99 -5.03 15.63 16 4 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.26 -6.66 9.65 -15.06 -0.15 -6.81 16 8 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -13.94 3.05 -171.83 -0.52 -14.46 16 10 C 0.14 3.09 5.45 -3.54 -0.02 3.07 16 11 C 0.04 0.69 6.98 37.31 0.26 0.95 16 12 O -0.39 -6.44 10.33 -35.23 -0.36 -6.80 16 13 C 0.06 0.96 2.81 -26.58 -0.07 0.89 16 14 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 15 C 0.13 1.62 5.34 -4.04 -0.02 1.60 16 16 N -0.71 -7.25 5.46 -61.34 -0.34 -7.59 16 17 C 0.57 6.12 7.77 -12.46 -0.10 6.02 16 18 O -0.54 -7.50 16.30 5.28 0.09 -7.41 16 19 C -0.15 -1.24 5.98 -103.46 -0.62 -1.86 16 20 C -0.06 -0.38 9.73 -37.24 -0.36 -0.74 16 21 C -0.08 -0.52 10.09 -39.41 -0.40 -0.92 16 22 C 0.21 2.11 7.91 -155.70 -1.23 0.88 16 23 N -0.27 -3.26 12.28 31.26 0.38 -2.88 16 24 N -0.24 -2.88 12.19 29.73 0.36 -2.52 16 25 C 0.32 3.18 9.38 -88.51 -0.83 2.35 16 26 O -0.43 -2.97 13.65 -18.76 -0.26 -3.22 16 27 N -0.41 -3.79 2.95 -63.68 -0.19 -3.98 16 28 C 0.14 1.16 10.54 -16.33 -0.17 0.99 16 29 C 0.12 2.31 6.02 -3.53 -0.02 2.29 16 30 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.09 2.35 6.14 -51.93 -0.32 2.03 16 33 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.40 3.32 6.57 -40.82 -0.27 3.05 16 38 H 0.16 0.57 6.58 -52.49 -0.35 0.22 16 39 H 0.17 0.68 8.06 -52.48 -0.42 0.26 16 40 H 0.41 0.58 9.06 45.56 0.41 0.99 16 41 H 0.19 1.35 7.58 -52.49 -0.40 0.96 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 LS Contribution 366.01 15.07 5.52 5.52 Total: -1.00 -34.41 366.01 -7.81 -42.22 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -4.26 Total: 1.21 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: -3.82 Total: 8.70 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.32 Total: -55.83 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.53 Total: -17.44 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.41 -7.81 -42.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035546221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.374 kcal (2) G-P(sol) polarization free energy of solvation -34.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds