Wall clock time and date at job start Wed Apr 1 2020 04:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47261 * 2 1 4 4 O 1.34257 * 126.52163 * 270.18794 * 3 2 1 5 5 C 1.34055 * 108.22474 * 180.26518 * 4 3 2 6 6 N 1.29935 * 109.23996 * 359.73222 * 5 4 3 7 7 C 1.36074 * 108.48046 * 0.02562 * 6 5 4 8 8 C 1.47415 * 126.44820 * 180.02562 * 7 6 5 9 9 O 1.21613 * 119.99734 * 180.02562 * 8 7 6 10 10 N 1.34783 * 120.00274 * 0.02562 * 8 7 6 11 11 C 1.46490 * 119.99973 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47167 * 179.97438 * 11 10 8 13 13 N 1.31790 * 119.09875 * 270.02191 * 12 11 10 14 14 C 1.32793 * 120.72305 * 179.97438 * 13 12 11 15 15 O 1.35506 * 120.51551 * 180.02562 * 14 13 12 16 16 C 1.39423 * 118.96901 * 359.75069 * 14 13 12 17 17 C 1.38181 * 118.35275 * 0.47061 * 16 14 13 18 18 C 1.50697 * 120.41367 * 179.80466 * 17 16 14 19 19 N 1.46499 * 109.47276 * 94.71971 * 18 17 16 20 20 C 1.36935 * 119.99938 * 180.02562 * 19 18 17 21 21 H 1.08000 * 120.00518 * 359.72965 * 20 19 18 22 22 C 1.38817 * 119.99990 * 179.97438 * 20 19 18 23 23 N 1.31614 * 119.99892 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99858 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47174 * 89.99644 * 24 22 20 26 26 H 1.48494 * 109.46800 * 209.99692 * 24 22 20 27 27 H 1.48504 * 109.46913 * 329.99394 * 24 22 20 28 28 N 1.31763 * 119.09108 * 90.00041 * 12 11 10 29 29 H 1.08997 * 109.47255 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46826 * 300.00108 * 1 2 3 31 31 H 1.09002 * 109.46908 * 60.00063 * 1 2 3 32 32 H 1.09002 * 109.46826 * 239.99892 * 2 1 3 33 33 H 1.09002 * 109.46908 * 119.99937 * 2 1 3 34 34 H 1.07999 * 125.38042 * 179.76597 * 5 4 3 35 35 H 0.96998 * 119.99587 * 0.02562 * 10 8 7 36 36 H 1.09004 * 109.47512 * 60.00127 * 11 10 8 37 37 H 1.08994 * 109.47511 * 300.00073 * 11 10 8 38 38 H 0.96696 * 114.00421 * 90.00139 * 15 14 13 39 39 H 1.08004 * 120.81818 * 180.27222 * 16 14 13 40 40 H 1.09004 * 109.47205 * 334.71946 * 18 17 16 41 41 H 1.09005 * 109.47240 * 214.72155 * 18 17 16 42 42 H 0.96999 * 119.99984 * 0.02562 * 19 18 17 43 43 H 0.97005 * 119.99715 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2954 2.1753 -1.0789 5 6 2.7265 3.3728 -0.6581 6 7 2.7357 3.3923 0.6411 7 6 2.3029 2.1842 1.0936 8 6 2.1587 1.7774 2.5032 9 8 1.7593 0.6617 2.7762 10 7 2.4696 2.6420 3.4893 11 6 2.3258 2.2379 4.8900 12 6 2.7360 3.3778 5.7864 13 7 3.9943 3.4736 6.1662 14 6 4.3911 4.4652 6.9553 15 8 5.6861 4.5599 7.3429 16 6 3.4558 5.4106 7.3741 17 6 2.1466 5.2685 6.9555 18 6 1.0968 6.2610 7.3840 19 7 0.9499 7.2920 6.3536 20 6 0.0474 8.3075 6.5249 21 1 -0.5593 8.3460 7.4175 22 6 -0.0914 9.2848 5.5488 23 7 -0.9592 10.2605 5.7132 24 14 0.9526 9.2141 4.0014 25 1 0.2436 8.4261 2.9614 26 1 1.1909 10.5920 3.5017 27 1 2.2534 8.5680 4.3110 28 7 1.8267 4.2515 6.1684 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.0194 4.1922 -1.2978 35 1 2.7878 3.5320 3.2715 36 1 2.9619 1.3748 5.0864 37 1 1.2865 1.9757 5.0877 38 1 6.2384 5.0821 6.7451 39 1 3.7468 6.2317 8.0125 40 1 1.3978 6.7259 8.3228 41 1 0.1454 5.7470 7.5218 42 1 1.4920 7.2554 5.5501 43 1 -1.0564 10.9432 5.0309 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316716619.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:21 Heat of formation + Delta-G solvation = 15.423453 kcal Electronic energy + Delta-G solvation = -29443.129206 eV Core-core repulsion = 25105.577799 eV Total energy + Delta-G solvation = -4337.551407 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.76101 -41.38111 -39.64639 -37.89892 -35.90516 -35.21894 -34.86038 -34.29256 -33.20348 -31.93130 -31.02480 -29.71895 -27.86276 -26.96796 -24.78399 -23.90087 -23.41256 -22.77319 -21.82243 -21.40573 -20.73038 -19.07191 -18.57274 -18.09834 -17.54134 -17.15521 -16.60015 -16.40219 -15.95746 -15.49285 -15.33218 -15.23390 -14.94825 -14.78881 -14.39207 -14.05168 -13.91428 -13.72904 -13.30545 -13.12940 -12.98314 -12.91705 -12.77884 -12.31406 -12.12563 -12.07017 -11.65395 -11.55800 -11.43056 -11.04016 -10.95460 -10.77962 -10.45860 -10.39187 -10.26743 -9.69907 -9.57329 -9.44246 -9.33632 -9.15038 -9.03229 -7.38856 -5.86007 -3.24048 0.62614 0.79173 0.86300 1.75091 2.22257 2.76154 3.07086 3.18090 3.29910 3.34935 3.39331 3.55862 3.71520 3.80186 4.21385 4.22528 4.49211 4.50897 4.71680 4.76762 4.86417 4.94970 4.98412 5.15895 5.21444 5.22679 5.39890 5.44435 5.46963 5.51083 5.51825 5.59182 5.72204 5.80385 5.89018 6.04555 6.10017 6.23896 6.36863 6.88463 7.02672 7.17217 7.32543 7.84863 7.89885 7.96199 8.31060 9.06869 9.79343 9.96614 11.31585 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.008216 B = 0.003248 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3407.240329 B = 8619.882303 C =10637.981548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.046 4.046 3 C 0.049 3.951 4 O -0.198 6.198 5 C 0.178 3.822 6 N -0.463 5.463 7 C -0.076 4.076 8 C 0.610 3.390 9 O -0.532 6.532 10 N -0.703 5.703 11 C 0.197 3.803 12 C 0.315 3.685 13 N -0.530 5.530 14 C 0.355 3.645 15 O -0.476 6.476 16 C -0.217 4.217 17 C 0.194 3.806 18 C 0.201 3.799 19 N -0.745 5.745 20 C -0.249 4.249 21 H 0.095 0.905 22 C 0.011 3.989 23 N -0.928 5.928 24 Si 0.884 3.116 25 H -0.282 1.282 26 H -0.289 1.289 27 H -0.281 1.281 28 N -0.492 5.492 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.256 0.744 35 H 0.412 0.588 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.408 0.592 39 H 0.159 0.841 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.362 0.638 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.252 -18.822 -10.227 24.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.084 4.084 3 C -0.008 4.008 4 O -0.085 6.085 5 C -0.051 4.051 6 N -0.192 5.192 7 C -0.195 4.195 8 C 0.396 3.604 9 O -0.409 6.409 10 N -0.355 5.355 11 C 0.072 3.928 12 C 0.046 3.954 13 N -0.256 5.256 14 C 0.168 3.832 15 O -0.283 6.283 16 C -0.241 4.241 17 C 0.049 3.951 18 C 0.074 3.926 19 N -0.392 5.392 20 C -0.378 4.378 21 H 0.113 0.887 22 C -0.185 4.185 23 N -0.576 5.576 24 Si 0.714 3.286 25 H -0.208 1.208 26 H -0.215 1.215 27 H -0.207 1.207 28 N -0.208 5.208 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.136 0.864 34 H 0.272 0.728 35 H 0.247 0.753 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.267 0.733 39 H 0.176 0.824 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.195 0.805 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.571 -19.984 -9.592 24.558 hybrid contribution 1.403 1.365 -1.516 2.476 sum 11.974 -18.619 -11.109 24.768 Atomic orbital electron populations 1.21720 0.92864 1.03017 1.02696 1.20413 0.97267 0.85233 1.05446 1.23827 0.98145 0.95540 0.83300 1.84390 1.63547 1.24290 1.36237 1.28044 0.98802 0.87095 0.91160 1.70771 1.17136 1.20932 1.10338 1.21360 1.11183 0.91690 0.95315 1.16568 0.77222 0.84208 0.82437 1.90791 1.46950 1.19987 1.83180 1.45559 1.67087 1.17931 1.04898 1.19915 1.03415 0.92037 0.77445 1.22699 0.83767 0.94425 0.94488 1.67676 1.19774 1.24469 1.13655 1.19379 0.86142 0.88507 0.89210 1.84705 1.16790 1.76231 1.50571 1.23021 0.94726 1.01358 1.05032 1.22246 0.93452 0.91392 0.88011 1.19692 0.93564 0.86573 0.92779 1.42507 1.48209 1.28117 1.20328 1.19001 1.13338 1.00208 1.05267 0.88728 1.24631 0.98714 0.97098 0.98100 1.69690 1.37576 1.14919 1.35374 0.86569 0.80313 0.76954 0.84744 1.20849 1.21504 1.20699 1.68199 1.37347 1.03251 1.11994 0.90938 0.91570 0.92560 0.89693 0.86411 0.72828 0.75297 0.88355 0.87961 0.73330 0.82365 0.92865 0.92500 0.80521 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.89 37.16 0.37 -0.79 16 2 C -0.05 -0.38 5.93 -27.88 -0.17 -0.55 16 3 C 0.05 0.52 6.69 -35.08 -0.23 0.28 16 4 O -0.20 -1.88 10.73 6.50 0.07 -1.81 16 5 C 0.18 1.55 13.19 51.96 0.69 2.24 16 6 N -0.46 -5.68 11.06 -11.48 -0.13 -5.80 16 7 C -0.08 -0.96 6.99 -83.02 -0.58 -1.54 16 8 C 0.61 8.31 7.81 -12.52 -0.10 8.21 16 9 O -0.53 -7.69 14.81 5.27 0.08 -7.61 16 10 N -0.70 -9.40 5.54 -62.57 -0.35 -9.74 16 11 C 0.20 2.55 6.10 -5.20 -0.03 2.52 16 12 C 0.32 4.65 7.01 -157.23 -1.10 3.55 16 13 N -0.53 -7.67 10.36 -10.78 -0.11 -7.78 16 14 C 0.36 4.80 7.83 -16.69 -0.13 4.66 16 15 O -0.48 -5.17 13.57 -18.21 -0.25 -5.42 16 16 C -0.22 -3.05 9.79 -39.16 -0.38 -3.43 16 17 C 0.19 3.20 6.18 -82.32 -0.51 2.69 16 18 C 0.20 3.76 6.61 -5.20 -0.03 3.73 16 19 N -0.74 -17.33 5.40 -61.08 -0.33 -17.66 16 20 C -0.25 -6.86 10.47 -15.06 -0.16 -7.02 16 21 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 22 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 23 N -0.93 -28.61 13.97 55.49 0.78 -27.83 16 24 Si 0.88 21.95 27.74 -169.99 -4.71 17.23 16 25 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 28 N -0.49 -8.17 10.27 -7.06 -0.07 -8.24 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.12 1.08 6.48 -51.93 -0.34 0.74 16 34 H 0.26 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.41 5.68 8.19 -40.82 -0.33 5.35 16 36 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.41 2.41 9.06 45.56 0.41 2.82 16 39 H 0.16 1.92 8.06 -52.48 -0.42 1.49 16 40 H 0.05 0.92 8.06 -51.93 -0.42 0.50 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.36 8.46 5.52 -40.82 -0.23 8.23 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 380.99 15.07 5.74 5.74 Total: -1.00 -35.80 380.99 -6.05 -41.85 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -4.30 Total: 12.31 kcal Atomic # 6 Polarization: 17.24 SS G_CDS: -2.47 Total: 14.77 kcal Atomic # 7 Polarization: -76.85 SS G_CDS: -0.21 Total: -77.06 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.10 Total: -14.84 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.23 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.80 -6.05 -41.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316716619.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.273 kcal (2) G-P(sol) polarization free energy of solvation -35.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds