Wall clock time and date at job start Wed Apr 1 2020 04:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00086 * 2 1 4 4 H 1.48497 * 109.47381 * 274.98348 * 3 2 1 5 5 H 1.48501 * 109.46972 * 34.98525 * 3 2 1 6 6 H 1.48502 * 109.46751 * 154.98149 * 3 2 1 7 7 C 1.38811 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00463 * 186.43589 * 7 2 1 9 9 N 1.36942 * 119.99739 * 6.44364 * 7 2 1 10 10 C 1.47874 * 126.94406 * 353.67327 * 9 7 2 11 11 C 1.56017 * 105.10084 * 182.00638 * 10 9 7 12 12 H 1.09009 * 116.24472 * 158.83471 * 11 10 9 13 13 C 1.57081 * 99.61051 * 32.80997 * 11 10 9 14 14 C 1.49286 * 126.94335 * 173.68343 * 9 7 2 15 15 H 1.08997 * 116.78894 * 16.29755 * 14 9 7 16 16 C 1.56019 * 104.09137 * 246.68970 * 14 9 7 17 17 N 1.47866 * 105.10578 * 288.76976 * 16 14 9 18 18 C 1.34782 * 126.94642 * 182.02254 * 17 16 14 19 19 O 1.21273 * 120.00220 * 179.97438 * 18 17 16 20 20 C 1.50698 * 119.99784 * 359.97385 * 18 17 16 21 21 N 1.46497 * 109.47168 * 180.02562 * 20 18 17 22 22 C 1.34780 * 119.99934 * 179.97438 * 21 20 18 23 23 O 1.21563 * 120.00112 * 359.97438 * 22 21 20 24 24 C 1.47732 * 119.99597 * 179.97438 * 22 21 20 25 25 C 1.39644 * 120.11762 * 359.72748 * 24 22 21 26 26 C 1.37840 * 119.87718 * 179.74093 * 25 24 22 27 27 C 1.38664 * 120.11716 * 0.51307 * 26 25 24 28 28 F 1.35097 * 119.88161 * 179.74381 * 27 26 25 29 29 C 1.38650 * 120.23608 * 359.76174 * 27 26 25 30 30 C 1.37840 * 120.12520 * 359.97438 * 29 27 26 31 31 H 0.97003 * 119.99896 * 0.02562 * 1 2 3 32 32 H 1.08994 * 110.30986 * 63.09820 * 10 9 7 33 33 H 1.08999 * 110.31597 * 300.91620 * 10 9 7 34 34 H 1.09006 * 112.36913 * 64.26848 * 13 11 10 35 35 H 1.08993 * 112.37269 * 191.71315 * 13 11 10 36 36 H 1.09002 * 110.31653 * 47.67767 * 16 14 9 37 37 H 1.09002 * 110.31980 * 169.86081 * 16 14 9 38 38 H 1.09003 * 109.47255 * 299.99929 * 20 18 17 39 39 H 1.09002 * 109.47638 * 59.99558 * 20 18 17 40 40 H 0.96999 * 120.00105 * 0.02562 * 21 20 18 41 41 H 1.07997 * 120.06454 * 359.97368 * 25 24 22 42 42 H 1.07995 * 119.94604 * 180.25120 * 26 25 24 43 43 H 1.08006 * 119.93746 * 179.97438 * 29 27 26 44 44 H 1.07997 * 120.06526 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1073 -1.3947 5 1 1.5043 2.6200 0.8028 6 1 3.5964 1.4120 0.5921 7 6 2.0102 -1.2021 0.0005 8 1 3.0851 -1.2051 0.1054 9 7 1.3320 -2.3844 -0.1320 10 6 -0.1349 -2.5697 -0.1548 11 6 -0.3481 -4.1107 -0.2736 12 1 -1.3193 -4.4890 0.0459 13 6 0.9006 -4.6114 0.5373 14 6 1.9241 -3.7465 -0.2825 15 1 2.9758 -3.8569 -0.0184 16 6 1.5273 -4.1755 -1.7292 17 7 0.0718 -4.4292 -1.6703 18 6 -0.7165 -4.8613 -2.6745 19 8 -1.9027 -5.0284 -2.4854 20 6 -0.1239 -5.1366 -4.0325 21 7 -1.1783 -5.5908 -4.9425 22 6 -0.8795 -5.8975 -6.2204 23 8 0.2648 -5.7969 -6.6181 24 6 -1.9427 -6.3561 -7.1379 25 6 -3.2571 -6.4781 -6.6821 26 6 -4.2462 -6.9013 -7.5438 27 6 -3.9361 -7.2158 -8.8582 28 9 -4.9084 -7.6350 -9.6973 29 6 -2.6318 -7.1019 -9.3143 30 6 -1.6359 -6.6744 -8.4626 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5673 -2.0603 -1.0160 33 1 -0.5780 -2.1964 0.7684 34 1 0.8580 -4.3197 1.5867 35 1 1.0716 -5.6811 0.4170 36 1 1.7433 -3.3730 -2.4345 37 1 2.0586 -5.0837 -2.0138 38 1 0.3257 -4.2243 -4.4245 39 1 0.6397 -5.9097 -3.9458 40 1 -2.0916 -5.6701 -4.6255 41 1 -3.4988 -6.2377 -5.6573 42 1 -5.2637 -6.9921 -7.1935 43 1 -2.3956 -7.3485 -10.3390 44 1 -0.6201 -6.5865 -8.8188 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665428362.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:43 Heat of formation + Delta-G solvation = -23.483716 kcal Electronic energy + Delta-G solvation = -29516.090798 eV Core-core repulsion = 25156.932288 eV Total energy + Delta-G solvation = -4359.158510 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.36007 -40.61720 -40.06175 -38.57381 -37.87560 -34.63429 -33.75117 -31.89599 -31.57116 -31.22433 -29.35280 -28.69577 -27.48808 -25.28770 -24.06597 -23.51123 -23.19121 -20.95602 -20.63974 -19.96968 -19.00588 -18.37398 -17.86515 -17.01061 -16.92918 -16.33191 -16.10336 -15.97727 -15.77293 -15.51235 -15.23454 -14.82417 -14.54453 -14.16219 -13.99975 -13.78743 -13.58890 -13.53525 -13.16198 -12.99508 -12.75387 -12.33607 -12.27169 -11.97647 -11.73234 -11.47792 -11.44005 -11.11363 -10.95639 -10.84914 -10.68851 -10.34273 -10.26850 -10.13128 -9.78538 -9.67323 -9.62420 -9.40266 -9.11322 -8.75618 -8.18434 -6.99790 -5.84689 -3.18634 0.28689 0.77464 2.45509 2.68304 2.77458 3.33821 3.36711 3.38922 3.39106 3.41639 3.73692 4.23469 4.36428 4.39065 4.41116 4.56084 4.75828 4.86021 5.00374 5.09866 5.20439 5.28958 5.34701 5.41729 5.45867 5.48993 5.54209 5.61875 5.66666 5.71034 5.83716 5.84204 6.01577 6.10889 6.16785 6.29774 6.33601 6.37502 6.50738 6.56765 7.28541 7.31050 7.41816 7.64736 7.85341 7.97912 8.02845 8.28707 9.03145 9.64409 10.32850 11.27874 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.017306 B = 0.002101 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.509832 B =13322.461112 C =13724.922510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.004 4.004 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.234 4.234 8 H 0.082 0.918 9 N -0.597 5.597 10 C 0.173 3.827 11 C 0.099 3.901 12 H 0.115 0.885 13 C -0.152 4.152 14 C 0.142 3.858 15 H 0.108 0.892 16 C 0.078 3.922 17 N -0.598 5.598 18 C 0.523 3.477 19 O -0.557 6.557 20 C 0.105 3.895 21 N -0.710 5.710 22 C 0.561 3.439 23 O -0.536 6.536 24 C -0.143 4.143 25 C -0.054 4.054 26 C -0.160 4.160 27 C 0.122 3.878 28 F -0.135 7.135 29 C -0.163 4.163 30 C -0.030 4.030 31 H 0.254 0.746 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.411 0.589 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.143 0.857 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.375 -15.948 -12.190 20.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.201 4.201 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.362 4.362 8 H 0.099 0.901 9 N -0.321 5.321 10 C 0.048 3.952 11 C -0.004 4.004 12 H 0.133 0.867 13 C -0.192 4.192 14 C 0.033 3.967 15 H 0.126 0.874 16 C -0.047 4.047 17 N -0.331 5.331 18 C 0.311 3.689 19 O -0.437 6.437 20 C -0.022 4.022 21 N -0.365 5.365 22 C 0.348 3.652 23 O -0.414 6.414 24 C -0.146 4.146 25 C -0.073 4.073 26 C -0.179 4.179 27 C 0.103 3.897 28 F -0.114 7.114 29 C -0.182 4.182 30 C -0.049 4.049 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.250 0.750 41 H 0.159 0.841 42 H 0.161 0.839 43 H 0.161 0.839 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.308 -15.685 -12.410 20.460 hybrid contribution -0.243 0.919 -0.077 0.954 sum -4.551 -14.767 -12.487 19.867 Atomic orbital electron populations 1.69921 1.05015 1.25432 1.55973 1.24850 0.95682 0.97795 1.01781 0.86111 0.78683 0.83465 0.77546 1.21572 1.21750 1.20522 1.19053 0.91048 0.82119 1.43987 0.90052 1.45242 1.01230 1.00461 1.85160 1.21951 0.84858 0.87106 1.01283 1.24376 0.97920 0.99075 0.78996 0.86687 1.24186 0.96681 0.98511 0.99823 1.23168 0.96665 0.86544 0.90323 0.87383 1.23433 0.79334 0.99497 1.02461 1.49120 1.09873 1.63136 1.10962 1.19897 0.86294 0.77452 0.85286 1.90643 1.15256 1.54834 1.82955 1.21066 0.90783 1.02435 0.87893 1.45616 1.13121 1.67604 1.10155 1.18077 0.88140 0.77473 0.81477 1.90797 1.20962 1.53354 1.76324 1.19981 0.93693 1.05723 0.95214 1.21292 0.91247 0.94746 1.00012 1.21118 1.01363 1.03300 0.92099 1.17998 0.85677 0.97802 0.88238 1.91527 1.61864 1.87262 1.70728 1.21152 0.91149 1.04123 1.01740 1.21155 1.00089 0.92452 0.91155 0.93530 0.93083 0.92860 0.89630 0.91534 0.90587 0.92362 0.88122 0.88390 0.74995 0.84128 0.83863 0.83904 0.83411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.08 10.61 55.49 0.59 -25.49 16 2 C 0.00 -0.11 5.49 -17.43 -0.10 -0.20 16 3 Si 0.91 21.29 29.56 -169.99 -5.02 16.27 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.23 -6.03 10.36 -15.06 -0.16 -6.19 16 8 H 0.08 2.00 7.84 -52.49 -0.41 1.59 16 9 N -0.60 -13.69 3.02 -156.34 -0.47 -14.16 16 10 C 0.17 3.95 4.77 -1.67 -0.01 3.94 16 11 C 0.10 1.77 5.23 -62.56 -0.33 1.44 16 12 H 0.12 1.99 8.08 -51.92 -0.42 1.57 16 13 C -0.15 -2.38 6.81 -22.30 -0.15 -2.53 16 14 C 0.14 2.45 5.53 -62.55 -0.35 2.11 16 15 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 16 C 0.08 1.23 6.01 -1.68 -0.01 1.22 16 17 N -0.60 -10.09 2.95 -156.78 -0.46 -10.55 16 18 C 0.52 8.54 7.96 -10.98 -0.09 8.45 16 19 O -0.56 -10.25 16.03 5.56 0.09 -10.16 16 20 C 0.11 1.43 5.44 -5.20 -0.03 1.40 16 21 N -0.71 -8.90 5.48 -62.47 -0.34 -9.25 16 22 C 0.56 7.18 7.77 -12.38 -0.10 7.08 16 23 O -0.54 -8.37 16.34 5.31 0.09 -8.28 16 24 C -0.14 -1.47 5.87 -104.97 -0.62 -2.08 16 25 C -0.05 -0.46 9.54 -39.20 -0.37 -0.84 16 26 C -0.16 -1.25 10.01 -39.57 -0.40 -1.65 16 27 C 0.12 1.04 7.31 -39.27 -0.29 0.75 16 28 F -0.14 -1.22 17.26 2.25 0.04 -1.18 16 29 C -0.16 -1.28 10.01 -39.57 -0.40 -1.67 16 30 C -0.03 -0.27 9.59 -39.20 -0.38 -0.65 16 31 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.05 1.35 7.53 -51.93 -0.39 0.96 16 33 H 0.05 1.35 7.64 -51.93 -0.40 0.95 16 34 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.41 4.80 5.47 -40.82 -0.22 4.58 16 41 H 0.14 1.02 6.40 -52.49 -0.34 0.68 16 42 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 44 H 0.15 1.28 7.65 -52.49 -0.40 0.88 16 LS Contribution 372.28 15.07 5.61 5.61 Total: -1.00 -31.90 372.28 -9.16 -41.06 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -5.52 Total: 5.56 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: -3.75 Total: 10.57 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.69 Total: -59.45 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.18 Total: -18.44 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.04 Total: -1.18 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.90 -9.16 -41.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665428362.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.579 kcal (2) G-P(sol) polarization free energy of solvation -31.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds