Wall clock time and date at job start Wed Apr 1 2020 04:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00086 * 2 1 4 4 H 1.48497 * 109.47381 * 274.98348 * 3 2 1 5 5 H 1.48501 * 109.46972 * 34.98525 * 3 2 1 6 6 H 1.48502 * 109.46751 * 154.98149 * 3 2 1 7 7 C 1.38811 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00463 * 186.43589 * 7 2 1 9 9 N 1.36942 * 119.99739 * 6.44364 * 7 2 1 10 10 C 1.47874 * 126.94406 * 353.67327 * 9 7 2 11 11 C 1.56017 * 105.10084 * 182.00638 * 10 9 7 12 12 H 1.09009 * 116.24472 * 158.83471 * 11 10 9 13 13 C 1.57081 * 99.61051 * 32.80997 * 11 10 9 14 14 C 1.49286 * 126.94335 * 173.68343 * 9 7 2 15 15 H 1.08997 * 116.78894 * 16.29755 * 14 9 7 16 16 C 1.56019 * 104.09137 * 246.68970 * 14 9 7 17 17 N 1.47866 * 105.10578 * 288.76976 * 16 14 9 18 18 C 1.34782 * 126.94642 * 182.02254 * 17 16 14 19 19 O 1.21273 * 120.00220 * 179.97438 * 18 17 16 20 20 C 1.50698 * 119.99784 * 359.97385 * 18 17 16 21 21 N 1.46497 * 109.47168 * 180.02562 * 20 18 17 22 22 C 1.34780 * 119.99934 * 179.97438 * 21 20 18 23 23 O 1.21563 * 120.00112 * 359.97438 * 22 21 20 24 24 C 1.47732 * 119.99597 * 179.97438 * 22 21 20 25 25 C 1.39644 * 120.11762 * 359.72748 * 24 22 21 26 26 C 1.37840 * 119.87718 * 179.74093 * 25 24 22 27 27 C 1.38664 * 120.11716 * 0.51307 * 26 25 24 28 28 F 1.35097 * 119.88161 * 179.74381 * 27 26 25 29 29 C 1.38650 * 120.23608 * 359.76174 * 27 26 25 30 30 C 1.37840 * 120.12520 * 359.97438 * 29 27 26 31 31 H 0.97003 * 119.99896 * 0.02562 * 1 2 3 32 32 H 1.08994 * 110.30986 * 63.09820 * 10 9 7 33 33 H 1.08999 * 110.31597 * 300.91620 * 10 9 7 34 34 H 1.09006 * 112.36913 * 64.26848 * 13 11 10 35 35 H 1.08993 * 112.37269 * 191.71315 * 13 11 10 36 36 H 1.09002 * 110.31653 * 47.67767 * 16 14 9 37 37 H 1.09002 * 110.31980 * 169.86081 * 16 14 9 38 38 H 1.09003 * 109.47255 * 299.99929 * 20 18 17 39 39 H 1.09002 * 109.47638 * 59.99558 * 20 18 17 40 40 H 0.96999 * 120.00105 * 0.02562 * 21 20 18 41 41 H 1.07997 * 120.06454 * 359.97368 * 25 24 22 42 42 H 1.07995 * 119.94604 * 180.25120 * 26 25 24 43 43 H 1.08006 * 119.93746 * 179.97438 * 29 27 26 44 44 H 1.07997 * 120.06526 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1073 -1.3947 5 1 1.5043 2.6200 0.8028 6 1 3.5964 1.4120 0.5921 7 6 2.0102 -1.2021 0.0005 8 1 3.0851 -1.2051 0.1054 9 7 1.3320 -2.3844 -0.1320 10 6 -0.1349 -2.5697 -0.1548 11 6 -0.3481 -4.1107 -0.2736 12 1 -1.3193 -4.4890 0.0459 13 6 0.9006 -4.6114 0.5373 14 6 1.9241 -3.7465 -0.2825 15 1 2.9758 -3.8569 -0.0184 16 6 1.5273 -4.1755 -1.7292 17 7 0.0718 -4.4292 -1.6703 18 6 -0.7165 -4.8613 -2.6745 19 8 -1.9027 -5.0284 -2.4854 20 6 -0.1239 -5.1366 -4.0325 21 7 -1.1783 -5.5908 -4.9425 22 6 -0.8795 -5.8975 -6.2204 23 8 0.2648 -5.7969 -6.6181 24 6 -1.9427 -6.3561 -7.1379 25 6 -3.2571 -6.4781 -6.6821 26 6 -4.2462 -6.9013 -7.5438 27 6 -3.9361 -7.2158 -8.8582 28 9 -4.9084 -7.6350 -9.6973 29 6 -2.6318 -7.1019 -9.3143 30 6 -1.6359 -6.6744 -8.4626 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5673 -2.0603 -1.0160 33 1 -0.5780 -2.1964 0.7684 34 1 0.8580 -4.3197 1.5867 35 1 1.0716 -5.6811 0.4170 36 1 1.7433 -3.3730 -2.4345 37 1 2.0586 -5.0837 -2.0138 38 1 0.3257 -4.2243 -4.4245 39 1 0.6397 -5.9097 -3.9458 40 1 -2.0916 -5.6701 -4.6255 41 1 -3.4988 -6.2377 -5.6573 42 1 -5.2637 -6.9921 -7.1935 43 1 -2.3956 -7.3485 -10.3390 44 1 -0.6201 -6.5865 -8.8188 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665428362.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:42 Heat of formation + Delta-G solvation = -43.551300 kcal Electronic energy + Delta-G solvation = -29516.960994 eV Core-core repulsion = 25156.932288 eV Total energy + Delta-G solvation = -4360.028706 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.03567 -41.79780 -41.20407 -39.65318 -38.99484 -35.72270 -35.48633 -33.45495 -32.32385 -32.03356 -30.89815 -30.26995 -28.62168 -26.97567 -25.30732 -24.59488 -23.97802 -22.28066 -21.69002 -21.42814 -20.25276 -19.56758 -18.78404 -18.42805 -17.93453 -17.55822 -17.36886 -17.03329 -16.70577 -16.52682 -16.41446 -16.00780 -15.84456 -15.57029 -15.10611 -14.94395 -14.71011 -14.36829 -14.24412 -13.87192 -13.81162 -13.79272 -13.51240 -13.32351 -13.20502 -13.13622 -12.83622 -12.74084 -12.34083 -12.13090 -12.10390 -12.03536 -11.86337 -11.53741 -11.30338 -11.11435 -10.71988 -10.42532 -10.25252 -9.85470 -9.60525 -8.89621 -7.86399 -5.20376 -0.44750 0.14447 1.42879 1.46730 1.48103 1.56479 1.59153 1.60856 2.21359 2.48191 2.62316 3.07891 3.27035 3.32571 3.47466 3.55440 3.63896 3.78007 3.81347 3.89155 4.02584 4.13256 4.19511 4.22151 4.23279 4.28669 4.60312 4.67670 4.71292 4.78709 4.84604 4.94023 4.98210 5.01859 5.03694 5.09852 5.14967 5.17097 5.25772 5.44926 5.53909 5.66379 5.69414 6.10614 6.31095 6.54596 6.93636 7.00142 7.03435 7.71285 8.41554 9.25178 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.017306 B = 0.002101 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.509832 B =13322.461112 C =13724.922510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.973 3.027 4 H -0.294 1.294 5 H -0.302 1.302 6 H -0.261 1.261 7 C -0.228 4.228 8 H 0.095 0.905 9 N -0.618 5.618 10 C 0.184 3.816 11 C 0.104 3.896 12 H 0.120 0.880 13 C -0.129 4.129 14 C 0.134 3.866 15 H 0.136 0.864 16 C 0.085 3.915 17 N -0.602 5.602 18 C 0.522 3.478 19 O -0.580 6.580 20 C 0.114 3.886 21 N -0.708 5.708 22 C 0.563 3.437 23 O -0.569 6.569 24 C -0.160 4.160 25 C -0.052 4.052 26 C -0.158 4.158 27 C 0.117 3.883 28 F -0.138 7.138 29 C -0.157 4.157 30 C -0.034 4.034 31 H 0.243 0.757 32 H 0.001 0.999 33 H 0.015 0.985 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.055 0.945 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.119 0.881 40 H 0.415 0.585 41 H 0.152 0.848 42 H 0.164 0.836 43 H 0.165 0.835 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.217 -18.306 -12.879 22.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.802 3.198 4 H -0.221 1.221 5 H -0.229 1.229 6 H -0.185 1.185 7 C -0.357 4.357 8 H 0.113 0.887 9 N -0.342 5.342 10 C 0.058 3.942 11 C 0.001 3.999 12 H 0.138 0.862 13 C -0.169 4.169 14 C 0.028 3.972 15 H 0.154 0.846 16 C -0.039 4.039 17 N -0.335 5.335 18 C 0.311 3.689 19 O -0.461 6.461 20 C -0.013 4.013 21 N -0.363 5.363 22 C 0.352 3.648 23 O -0.449 6.449 24 C -0.163 4.163 25 C -0.071 4.071 26 C -0.176 4.176 27 C 0.098 3.902 28 F -0.116 7.116 29 C -0.176 4.176 30 C -0.053 4.053 31 H 0.053 0.947 32 H 0.019 0.981 33 H 0.033 0.967 34 H 0.100 0.900 35 H 0.124 0.876 36 H 0.073 0.927 37 H 0.124 0.876 38 H 0.113 0.887 39 H 0.137 0.863 40 H 0.255 0.745 41 H 0.169 0.831 42 H 0.181 0.819 43 H 0.182 0.818 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.115 -18.094 -13.101 22.555 hybrid contribution -0.633 1.592 0.107 1.717 sum -3.748 -16.502 -12.994 21.335 Atomic orbital electron populations 1.70151 1.06535 1.25105 1.58574 1.25644 0.96379 1.01079 1.03189 0.85130 0.78164 0.79627 0.76872 1.22131 1.22934 1.18518 1.19521 0.91796 0.83248 1.41162 0.88721 1.45502 1.01518 1.02180 1.85008 1.21566 0.84960 0.90395 0.97243 1.24188 0.99668 0.95266 0.80735 0.86181 1.24084 0.93707 1.00272 0.98791 1.23601 0.98385 0.83545 0.91675 0.84636 1.23338 0.78895 1.01020 1.00670 1.49164 1.10543 1.63154 1.10614 1.20330 0.85922 0.76704 0.85903 1.90630 1.16325 1.55768 1.83422 1.20988 0.91216 1.02909 0.86189 1.45619 1.13153 1.67392 1.10130 1.18421 0.88266 0.76658 0.81463 1.90773 1.22377 1.54953 1.76827 1.19909 0.93705 1.07334 0.95330 1.21392 0.90638 0.94402 1.00674 1.21338 1.02171 1.02367 0.91747 1.18175 0.85844 0.97730 0.88492 1.91525 1.61987 1.87293 1.70845 1.21336 0.90579 1.03124 1.02548 1.21227 1.00547 0.92595 0.90938 0.94746 0.98070 0.96695 0.90033 0.87616 0.92666 0.87551 0.88695 0.86305 0.74483 0.83083 0.81853 0.81756 0.83331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.14 10.61 21.65 0.23 -56.91 16 2 C -0.07 -3.87 5.49 84.86 0.47 -3.40 16 3 Si 0.97 44.72 29.56 68.60 2.03 46.75 16 4 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 6 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 7 C -0.23 -11.79 10.36 84.03 0.87 -10.92 16 8 H 0.10 4.52 7.84 -2.91 -0.02 4.50 16 9 N -0.62 -28.38 3.02 -648.53 -1.96 -30.33 16 10 C 0.18 8.75 4.77 87.16 0.42 9.17 16 11 C 0.10 3.68 5.23 46.93 0.25 3.93 16 12 H 0.12 4.11 8.08 -2.38 -0.02 4.09 16 13 C -0.13 -3.66 6.81 33.47 0.23 -3.43 16 14 C 0.13 4.29 5.53 46.93 0.26 4.55 16 15 H 0.14 3.61 8.14 -2.39 -0.02 3.59 16 16 C 0.08 2.44 6.01 87.16 0.52 2.97 16 17 N -0.60 -19.43 2.95 -768.34 -2.26 -21.70 16 18 C 0.52 16.46 7.96 87.66 0.70 17.16 16 19 O -0.58 -21.00 16.03 -3.01 -0.05 -21.05 16 20 C 0.11 2.93 5.44 85.63 0.47 3.39 16 21 N -0.71 -17.06 5.48 -469.82 -2.57 -19.63 16 22 C 0.56 13.98 7.77 86.75 0.67 14.65 16 23 O -0.57 -17.43 16.34 -3.91 -0.06 -17.50 16 24 C -0.16 -3.12 5.87 -20.09 -0.12 -3.24 16 25 C -0.05 -0.82 9.54 22.52 0.21 -0.60 16 26 C -0.16 -2.16 10.01 22.28 0.22 -1.94 16 27 C 0.12 1.76 7.31 22.47 0.16 1.92 16 28 F -0.14 -2.23 17.26 44.97 0.78 -1.45 16 29 C -0.16 -2.19 10.01 22.27 0.22 -1.96 16 30 C -0.03 -0.58 9.59 22.52 0.22 -0.37 16 31 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 32 H 0.00 0.06 7.53 -2.39 -0.02 0.04 16 33 H 0.01 0.80 7.64 -2.39 -0.02 0.79 16 34 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 35 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.42 9.31 5.47 -92.71 -0.51 8.81 16 41 H 0.15 1.97 6.40 -2.91 -0.02 1.95 16 42 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 43 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 44 H 0.15 2.47 7.65 -2.91 -0.02 2.45 16 Total: -1.00 -72.62 372.28 2.44 -70.18 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 0.54 Total: 19.77 kcal Atomic # 6 Polarization: 26.10 SS G_CDS: 5.77 Total: 31.87 kcal Atomic # 7 Polarization: -122.00 SS G_CDS: -6.57 Total: -128.57 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -0.11 Total: -38.54 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.78 Total: -1.45 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -72.62 2.44 -70.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665428362.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.629 kcal (2) G-P(sol) polarization free energy of solvation -72.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds