Wall clock time and date at job start Wed Apr 1 2020 05:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.37447 * 126.48890 * 2 1 4 4 C 1.34509 * 106.94774 * 180.25863 * 3 2 1 5 5 N 1.34253 * 108.30085 * 359.74396 * 4 3 2 6 6 C 1.31166 * 109.29859 * 0.02562 * 5 4 3 7 7 N 1.38754 * 125.78546 * 180.02562 * 6 5 4 8 8 C 1.34778 * 120.00382 * 0.02562 * 7 6 5 9 9 O 1.21567 * 119.99748 * 0.02562 * 8 7 6 10 10 C 1.47508 * 119.99997 * 179.97438 * 8 7 6 11 11 N 1.29004 * 125.79629 * 359.97438 * 10 8 7 12 12 O 1.41387 * 112.88747 * 180.26577 * 11 10 8 13 13 C 1.43976 * 107.64120 * 342.04787 * 12 11 10 14 14 H 1.09002 * 113.13652 * 264.15210 * 13 12 11 15 15 C 1.53460 * 109.66911 * 136.93728 * 13 12 11 16 16 N 1.48542 * 107.12126 * 267.43710 * 15 13 12 17 17 C 1.34781 * 125.07689 * 181.21120 * 16 15 13 18 18 O 1.21283 * 119.99607 * 179.97438 * 17 16 15 19 19 C 1.50700 * 120.00245 * 359.97438 * 17 16 15 20 20 C 1.50700 * 109.46965 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00186 * 0.02562 * 20 19 17 22 22 C 1.37878 * 119.99609 * 179.97438 * 20 19 17 23 23 N 1.31517 * 119.99931 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00207 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47115 * 89.99462 * 24 22 20 26 26 H 1.48499 * 109.47360 * 209.99494 * 24 22 20 27 27 H 1.48504 * 109.47018 * 329.99825 * 24 22 20 28 28 C 1.46681 * 109.60396 * 1.20091 * 16 15 13 29 29 C 1.51733 * 125.79500 * 179.97438 * 10 8 7 30 30 H 1.08995 * 113.47953 * 318.61761 * 29 10 8 31 31 H 1.09000 * 109.47205 * 270.18181 * 1 2 3 32 32 H 1.09001 * 109.47331 * 30.17888 * 1 2 3 33 33 H 1.08996 * 109.47783 * 150.18337 * 1 2 3 34 34 H 1.08002 * 126.52882 * 0.02562 * 3 2 1 35 35 H 1.07992 * 125.84945 * 179.70776 * 4 3 2 36 36 H 0.97009 * 119.99704 * 180.02562 * 7 6 5 37 37 H 1.08998 * 109.74303 * 26.50311 * 15 13 12 38 38 H 1.08993 * 109.74802 * 147.15584 * 15 13 12 39 39 H 1.08992 * 109.46868 * 299.99695 * 19 17 16 40 40 H 1.09005 * 109.46840 * 59.99720 * 19 17 16 41 41 H 0.97000 * 120.00118 * 179.97438 * 23 22 20 42 42 H 1.09001 * 109.97250 * 222.41851 * 28 16 15 43 43 H 1.08996 * 110.01004 * 101.15066 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2823 1.1050 0.0000 4 6 3.5499 0.6551 -0.0058 5 7 3.5208 -0.6871 -0.0036 6 6 2.2738 -1.0937 0.0028 7 7 1.8513 -2.4153 0.0074 8 6 2.7579 -3.4127 0.0057 9 8 3.9458 -3.1543 0.0008 10 6 2.3087 -4.8177 0.0111 11 7 1.0823 -5.2177 0.0180 12 8 0.9635 -6.6266 0.0278 13 6 2.2260 -7.1739 -0.3958 14 1 2.2546 -7.4116 -1.4592 15 6 2.5977 -8.3658 0.4964 16 7 3.4342 -7.8383 1.6048 17 6 3.9778 -8.5837 2.5874 18 8 4.6481 -8.0554 3.4491 19 6 3.7527 -10.0736 2.6153 20 6 4.4624 -10.6666 3.8051 21 1 5.0202 -10.0284 4.4744 22 6 4.3986 -12.0237 4.0399 23 7 5.0184 -12.5414 5.0779 24 14 3.4331 -13.1274 2.8826 25 1 4.3257 -13.6084 1.7976 26 1 2.9002 -14.2902 3.6371 27 1 2.3060 -12.3611 2.2931 28 6 3.5771 -6.3852 1.4649 29 6 3.2107 -6.0378 0.0095 30 1 4.0688 -5.9426 -0.6558 31 1 -0.3633 0.0033 1.0277 32 1 -0.3634 0.8884 -0.5166 33 1 -0.3634 -0.8915 -0.5109 34 1 1.9668 2.1380 0.0004 35 1 4.4387 1.2685 -0.0119 36 1 0.9034 -2.6215 0.0117 37 1 1.6928 -8.8186 0.9018 38 1 3.1492 -9.1039 -0.0858 39 1 2.6848 -10.2783 2.6896 40 1 4.1450 -10.5175 1.7003 41 1 4.9732 -13.4961 5.2433 42 1 4.6063 -6.0908 1.6702 43 1 2.9004 -5.8761 2.1511 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269024576.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:13 Heat of formation + Delta-G solvation = 30.742903 kcal Electronic energy + Delta-G solvation = -29738.654103 eV Core-core repulsion = 25401.766998 eV Total energy + Delta-G solvation = -4336.887106 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.19934 -42.52095 -40.78753 -40.14114 -37.18247 -36.25855 -35.06376 -34.96066 -34.72121 -32.52219 -31.24479 -30.05491 -29.54936 -27.94435 -26.49237 -25.79992 -24.12941 -23.09993 -22.67488 -21.86661 -20.81262 -20.43029 -19.44399 -19.11341 -18.64206 -17.84296 -17.72561 -17.30349 -16.85363 -16.76100 -16.53208 -16.43624 -16.13755 -15.95570 -15.60158 -15.14723 -14.83276 -14.77325 -14.54315 -14.35876 -14.18154 -13.93553 -13.64410 -13.53577 -13.46764 -13.35763 -13.15162 -12.85975 -12.73925 -12.39828 -12.14135 -12.00993 -11.90273 -11.83738 -11.53707 -11.03637 -10.82305 -10.79222 -10.71202 -10.64315 -9.81328 -8.99311 -8.26166 -6.36026 -0.53311 0.76897 0.90003 1.40448 1.45772 1.48173 1.56023 1.64656 1.72211 1.84797 2.08612 2.24395 2.39494 2.78382 2.82269 2.97312 3.06813 3.23318 3.66224 3.73930 3.86750 3.94374 4.00697 4.01981 4.20117 4.29292 4.38272 4.51342 4.55413 4.58867 4.59491 4.67463 4.69055 4.71162 4.72284 5.04087 5.15610 5.19596 5.45741 5.51095 5.71837 5.86718 6.06342 6.18418 6.41868 6.60993 6.80117 7.13608 7.21023 7.32928 8.91576 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.024342 B = 0.002136 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.991624 B =13108.369572 C =13719.357712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.467 5.467 3 C -0.028 4.028 4 C -0.050 4.050 5 N -0.519 5.519 6 C 0.397 3.603 7 N -0.611 5.611 8 C 0.595 3.405 9 O -0.478 6.478 10 C 0.067 3.933 11 N -0.230 5.230 12 O -0.180 6.180 13 C 0.048 3.952 14 H 0.176 0.824 15 C 0.094 3.906 16 N -0.626 5.626 17 C 0.536 3.464 18 O -0.584 6.584 19 C -0.016 4.016 20 C -0.539 4.539 21 H 0.024 0.976 22 C -0.001 4.001 23 N -0.954 5.954 24 Si 0.963 3.037 25 H -0.257 1.257 26 H -0.287 1.287 27 H -0.225 1.225 28 C 0.117 3.883 29 C -0.095 4.095 30 H 0.159 0.841 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.095 0.905 34 H 0.225 0.775 35 H 0.187 0.813 36 H 0.435 0.565 37 H 0.097 0.903 38 H 0.126 0.874 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.269 0.731 42 H 0.071 0.929 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.385 25.734 -22.188 38.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.157 5.157 3 C -0.160 4.160 4 C -0.197 4.197 5 N -0.245 5.245 6 C 0.046 3.954 7 N -0.265 5.265 8 C 0.377 3.623 9 O -0.344 6.344 10 C -0.128 4.128 11 N 0.027 4.973 12 O -0.203 6.203 13 C -0.010 4.010 14 H 0.193 0.807 15 C -0.028 4.028 16 N -0.363 5.363 17 C 0.328 3.672 18 O -0.463 6.463 19 C -0.055 4.055 20 C -0.577 4.577 21 H 0.043 0.957 22 C -0.197 4.197 23 N -0.594 5.594 24 Si 0.783 3.217 25 H -0.182 1.182 26 H -0.213 1.213 27 H -0.147 1.147 28 C -0.007 4.007 29 C -0.116 4.116 30 H 0.177 0.823 31 H 0.109 0.891 32 H 0.138 0.862 33 H 0.113 0.887 34 H 0.241 0.759 35 H 0.204 0.796 36 H 0.275 0.725 37 H 0.116 0.884 38 H 0.144 0.856 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.782 25.656 -21.513 37.452 hybrid contribution -0.048 -0.419 0.654 0.778 sum -16.829 25.237 -20.859 36.814 Atomic orbital electron populations 1.22490 0.73534 1.06931 1.05345 1.45607 1.08935 1.04388 1.56766 1.23279 0.89809 0.93119 1.09796 1.22726 0.98748 0.89663 1.08540 1.70682 1.17010 1.13920 1.22847 1.19314 0.86326 0.81852 1.07874 1.41890 1.11494 1.00464 1.72676 1.16757 0.85400 0.82201 0.77931 1.91014 1.16314 1.82548 1.44525 1.25312 0.93366 0.95040 0.99109 1.78285 1.18212 0.94718 1.06051 1.91279 1.33019 1.09611 1.86393 1.24953 0.81142 0.92547 1.02346 0.80685 1.22651 0.96456 0.96173 0.87498 1.48813 1.52722 1.06977 1.27750 1.21113 0.76880 0.90474 0.78780 1.90600 1.41341 1.74861 1.39516 1.19561 0.99702 0.87571 0.98691 1.21167 1.32483 0.93527 1.10501 0.95713 1.26212 0.96424 0.99583 0.97475 1.70105 1.45206 1.13280 1.30815 0.85512 0.80040 0.77667 0.78461 1.18200 1.21324 1.14698 1.21644 1.02216 0.82171 0.94676 1.23418 1.01851 0.88317 0.98045 0.82343 0.89074 0.86166 0.88678 0.75891 0.79605 0.72486 0.88439 0.85566 0.91122 0.90636 0.92267 0.91023 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.11 11.00 127.77 1.41 1.51 16 2 N -0.47 -5.62 3.19 -548.99 -1.75 -7.37 16 3 C -0.03 -0.31 11.60 82.96 0.96 0.65 16 4 C -0.05 -0.93 11.85 83.47 0.99 0.06 16 5 N -0.52 -13.98 9.42 -197.76 -1.86 -15.84 16 6 C 0.40 8.19 8.42 260.25 2.19 10.38 16 7 N -0.61 -10.90 5.39 -314.94 -1.70 -12.59 16 8 C 0.60 13.67 7.78 86.69 0.67 14.35 16 9 O -0.48 -14.92 15.63 -3.93 -0.06 -14.98 16 10 C 0.07 1.33 6.23 45.75 0.29 1.62 16 11 N -0.23 -4.36 12.14 -42.33 -0.51 -4.87 16 12 O -0.18 -3.61 12.07 -38.31 -0.46 -4.07 16 13 C 0.05 0.75 4.79 31.68 0.15 0.90 16 14 H 0.18 1.20 8.14 -2.39 -0.02 1.18 16 15 C 0.09 1.94 6.30 86.14 0.54 2.48 16 16 N -0.63 -20.57 3.36 -813.14 -2.73 -23.30 16 17 C 0.54 24.42 7.83 87.66 0.69 25.11 16 18 O -0.58 -33.28 15.74 -3.04 -0.05 -33.33 16 19 C -0.02 -0.72 3.69 29.10 0.11 -0.61 16 20 C -0.54 -32.79 9.48 25.60 0.24 -32.55 16 21 H 0.02 1.79 7.00 -2.91 -0.02 1.77 16 22 C 0.00 -0.04 5.47 84.65 0.46 0.42 16 23 N -0.95 -61.69 13.96 21.45 0.30 -61.39 16 24 Si 0.96 41.33 27.47 68.60 1.88 43.21 16 25 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 26 H -0.29 -12.39 7.11 99.48 0.71 -11.69 16 27 H -0.22 -8.11 6.54 99.48 0.65 -7.46 16 28 C 0.12 3.50 6.35 86.70 0.55 4.06 16 29 C -0.09 -1.88 4.10 -9.92 -0.04 -1.92 16 30 H 0.16 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.12 -0.36 8.14 -2.39 -0.02 -0.38 16 33 H 0.09 -0.03 7.52 -2.39 -0.02 -0.04 16 34 H 0.22 0.35 8.06 -2.91 -0.02 0.32 16 35 H 0.19 2.66 8.06 -2.91 -0.02 2.63 16 36 H 0.43 4.76 7.64 -92.70 -0.71 4.05 16 37 H 0.10 1.98 8.05 -2.39 -0.02 1.96 16 38 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.07 2.92 7.20 -2.39 -0.02 2.90 16 40 H 0.08 2.98 7.57 -2.38 -0.02 2.97 16 41 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 42 H 0.07 2.43 8.10 -2.39 -0.02 2.41 16 43 H 0.05 1.65 7.68 -2.39 -0.02 1.63 16 Total: -1.00 -98.41 369.89 2.58 -95.83 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.31 Total: 12.24 kcal Atomic # 6 Polarization: 17.24 SS G_CDS: 9.21 Total: 26.45 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -8.26 Total: -125.37 kcal Atomic # 8 Polarization: -51.81 SS G_CDS: -0.57 Total: -52.38 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 1.88 Total: 43.21 kcal Total: -98.41 2.58 -95.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024576.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.578 kcal (2) G-P(sol) polarization free energy of solvation -98.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds