Wall clock time and date at job start Wed Apr 1 2020 04:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 120.00082 * 2 1 4 4 H 1.48506 * 109.46734 * 270.00355 * 3 2 1 5 5 H 1.48495 * 109.46763 * 30.00116 * 3 2 1 6 6 H 1.48491 * 109.47186 * 150.00248 * 3 2 1 7 7 C 1.37880 * 120.00519 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00392 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99456 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46918 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46747 * 180.02562 * 10 9 7 12 12 O 1.45207 * 109.46622 * 179.97438 * 11 10 9 13 13 C 1.34705 * 116.99582 * 179.97438 * 12 11 10 14 14 O 1.21472 * 120.00397 * 0.02562 * 13 12 11 15 15 C 1.47743 * 119.99765 * 180.02562 * 13 12 11 16 16 C 1.39663 * 120.11943 * 0.02562 * 15 13 12 17 17 C 1.37968 * 119.99339 * 180.02562 * 16 15 13 18 18 C 1.38260 * 120.22780 * 0.02562 * 17 16 15 19 19 C 1.38950 * 120.23399 * 359.95930 * 18 17 16 20 20 N 1.39961 * 119.99850 * 179.97438 * 19 18 17 21 21 C 1.34777 * 120.00147 * 213.24785 * 20 19 18 22 22 O 1.21291 * 120.00102 * 5.27340 * 21 20 19 23 23 C 1.50700 * 119.99916 * 185.27014 * 21 20 19 24 24 H 1.08993 * 110.27478 * 305.64078 * 23 21 20 25 25 C 1.54949 * 110.30537 * 67.83543 * 23 21 20 26 26 C 1.55309 * 100.93986 * 155.36004 * 25 23 21 27 27 C 1.54379 * 102.24961 * 325.86464 * 26 25 23 28 28 O 1.43230 * 107.59252 * 21.35827 * 27 26 25 29 29 C 1.38628 * 120.00822 * 359.76396 * 19 18 17 30 30 H 0.96998 * 120.00001 * 359.97438 * 1 2 3 31 31 H 1.08994 * 109.47189 * 60.00335 * 9 7 2 32 32 H 1.09002 * 109.46803 * 299.99756 * 9 7 2 33 33 H 1.08994 * 109.47013 * 60.00109 * 10 9 7 34 34 H 1.08997 * 109.47116 * 300.00212 * 10 9 7 35 35 H 1.08994 * 109.47373 * 60.00210 * 11 10 9 36 36 H 1.09002 * 109.46791 * 299.99526 * 11 10 9 37 37 H 1.08006 * 119.99909 * 359.97438 * 16 15 13 38 38 H 1.08003 * 119.87865 * 179.97438 * 17 16 15 39 39 H 1.07997 * 119.87929 * 179.97438 * 18 17 16 40 40 H 0.96999 * 119.99590 * 33.24324 * 20 19 18 41 41 H 1.09004 * 111.12706 * 273.27819 * 25 23 21 42 42 H 1.09000 * 111.12457 * 37.43978 * 25 23 21 43 43 H 1.09006 * 110.84562 * 207.67751 * 26 25 23 44 44 H 1.09000 * 110.84855 * 84.05452 * 26 25 23 45 45 H 1.09004 * 109.83319 * 261.84060 * 27 26 25 46 46 H 1.09001 * 109.90718 * 140.91707 * 27 26 25 47 47 H 1.08001 * 120.11864 * 180.27902 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 8 2.4240 -6.0907 -0.0018 13 6 1.9091 -7.3355 -0.0019 14 8 0.7049 -7.4947 -0.0019 15 6 2.8091 -8.5071 -0.0019 16 6 4.1941 -8.3270 -0.0013 17 6 5.0321 -9.4230 -0.0019 18 6 4.5060 -10.7016 -0.0036 19 6 3.1296 -10.8917 -0.0039 20 7 2.6023 -12.1882 -0.0061 21 6 1.4441 -12.4436 -0.6464 22 8 0.9081 -11.5739 -1.3003 23 6 0.8152 -13.8097 -0.5500 24 1 1.5300 -14.5764 -0.8485 25 6 0.3146 -14.0705 0.8930 26 6 -0.7967 -15.1240 0.6335 27 6 -1.3618 -14.6747 -0.7311 28 8 -0.3605 -13.8765 -1.3727 29 6 2.2785 -9.7975 0.0025 30 1 -0.4850 0.8400 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6248 -2.5571 0.8897 33 1 2.8720 -3.6043 0.8894 34 1 2.8720 -3.6043 -0.8905 35 1 0.8540 -5.0446 -0.8913 36 1 0.8534 -5.0451 0.8886 37 1 4.6089 -7.3298 -0.0013 38 1 6.1029 -9.2815 -0.0019 39 1 5.1672 -11.5554 -0.0044 40 1 3.0704 -12.9029 0.4531 41 1 1.1086 -14.4824 1.5159 42 1 -0.0989 -13.1641 1.3352 43 1 -1.5644 -15.0764 1.4059 44 1 -0.3732 -16.1262 0.5670 45 1 -2.2654 -14.0839 -0.5808 46 1 -1.5883 -15.5469 -1.3444 47 1 1.2084 -9.9432 0.0068 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000030753679.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:00 Heat of formation + Delta-G solvation = -147.892384 kcal Electronic energy + Delta-G solvation = -28874.227198 eV Core-core repulsion = 24600.841477 eV Total energy + Delta-G solvation = -4273.385721 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.26533 -40.30602 -39.48317 -38.22578 -36.33999 -35.23997 -33.94532 -32.80005 -31.83339 -31.35869 -31.08673 -29.31555 -27.14434 -24.78905 -24.65600 -22.96909 -22.74860 -22.29628 -20.87035 -20.74327 -20.29912 -18.48378 -18.20520 -17.23491 -16.94160 -16.47182 -16.24309 -16.21209 -16.00054 -15.80628 -15.54146 -15.20802 -14.58904 -14.43079 -14.25802 -14.07349 -13.89243 -13.74778 -13.23802 -13.05158 -12.62249 -12.40106 -12.21993 -12.17262 -12.06621 -11.99107 -11.92612 -11.71952 -11.57310 -10.94945 -10.84364 -10.64376 -10.60191 -10.45536 -10.34951 -10.33322 -9.90350 -9.68399 -9.48228 -9.28890 -9.13502 -8.54873 -8.36045 -6.00680 -4.03719 0.50109 0.98566 2.04645 2.23160 2.61697 2.88701 3.33116 3.34751 3.39103 3.42620 3.59954 3.73499 3.99122 4.19565 4.43532 4.45355 4.46351 4.55942 4.57696 4.63014 4.85141 4.97714 4.99419 5.05874 5.11462 5.15710 5.20550 5.24108 5.35193 5.45934 5.56181 5.63348 5.68443 5.82443 5.94900 6.03371 6.08884 6.14048 6.30933 6.52779 6.58182 6.59057 6.84841 6.88085 7.01930 7.63663 7.63758 7.74982 7.96738 7.98394 8.38830 9.02535 9.60370 11.10753 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.018881 B = 0.001670 C = 0.001560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.581393 B =16758.584230 C =17940.939461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.023 3.977 10 C -0.108 4.108 11 C 0.068 3.932 12 O -0.352 6.352 13 C 0.502 3.498 14 O -0.503 6.503 15 C -0.098 4.098 16 C -0.075 4.075 17 C -0.112 4.112 18 C -0.114 4.114 19 C 0.132 3.868 20 N -0.671 5.671 21 C 0.507 3.493 22 O -0.487 6.487 23 C 0.068 3.932 24 H 0.101 0.899 25 C -0.148 4.148 26 C -0.153 4.153 27 C 0.047 3.953 28 O -0.352 6.352 29 C -0.061 4.061 30 H 0.261 0.739 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.144 0.856 38 H 0.137 0.863 39 H 0.132 0.868 40 H 0.412 0.588 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.585 -36.989 3.601 37.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.004 4.004 12 O -0.269 6.269 13 C 0.346 3.654 14 O -0.392 6.392 15 C -0.100 4.100 16 C -0.093 4.093 17 C -0.131 4.131 18 C -0.134 4.134 19 C 0.038 3.962 20 N -0.319 5.319 21 C 0.293 3.707 22 O -0.358 6.358 23 C 0.007 3.993 24 H 0.118 0.882 25 C -0.185 4.185 26 C -0.191 4.191 27 C -0.030 4.030 28 O -0.270 6.270 29 C -0.081 4.081 30 H 0.071 0.929 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.162 0.838 38 H 0.155 0.845 39 H 0.149 0.851 40 H 0.248 0.752 41 H 0.113 0.887 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.101 0.899 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.544 -36.185 2.905 36.886 hybrid contribution 0.461 0.457 0.377 0.750 sum 7.005 -35.728 3.282 36.556 Atomic orbital electron populations 1.69966 1.06084 1.26733 1.50538 1.25034 0.94876 0.99353 0.95228 0.86542 0.79787 0.83250 0.78120 1.20624 1.21216 1.19826 1.21176 0.93121 0.90678 1.50983 0.92411 1.19062 0.93869 0.90728 0.97740 1.21765 0.99939 0.90910 1.01976 1.23544 0.91214 0.83353 1.02319 1.86524 1.42358 1.14702 1.83306 1.21043 0.87082 0.83901 0.73414 1.90844 1.16130 1.86948 1.45286 1.19074 0.93202 0.90994 1.06722 1.21585 0.91812 1.00501 0.95448 1.20968 1.00342 0.91317 1.00439 1.21105 0.92739 0.98384 1.01217 1.17435 0.92027 0.84009 1.02691 1.43354 1.24498 1.09350 1.54700 1.20736 0.80592 0.90430 0.78975 1.90836 1.60772 1.46790 1.37370 1.22774 0.90511 0.93956 0.92068 0.88169 1.23290 0.99498 1.00786 0.94963 1.23133 0.98667 0.99346 0.97937 1.23261 0.91832 0.95062 0.92810 1.88567 1.23668 1.72239 1.42574 1.21223 1.01495 0.89603 0.95797 0.92906 0.96177 0.96200 0.92105 0.92095 0.91371 0.91405 0.83785 0.84511 0.85051 0.75227 0.88722 0.89394 0.89252 0.89943 0.90650 0.90667 0.83390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.18 13.29 55.43 0.74 -26.45 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.31 5.53 -26.73 -0.15 -2.46 16 11 C 0.07 1.34 5.48 37.16 0.20 1.54 16 12 O -0.35 -6.30 9.47 -40.50 -0.38 -6.69 16 13 C 0.50 8.83 7.90 34.62 0.27 9.11 16 14 O -0.50 -10.31 16.13 -19.24 -0.31 -10.62 16 15 C -0.10 -1.39 5.87 -105.00 -0.62 -2.00 16 16 C -0.07 -0.82 9.61 -39.15 -0.38 -1.20 16 17 C -0.11 -0.90 10.02 -39.67 -0.40 -1.30 16 18 C -0.11 -0.84 9.95 -39.31 -0.39 -1.23 16 19 C 0.13 1.28 6.27 -83.74 -0.53 0.76 16 20 N -0.67 -4.70 5.34 -9.89 -0.05 -4.75 16 21 C 0.51 5.02 6.91 -10.98 -0.08 4.94 16 22 O -0.49 -7.56 14.25 -13.78 -0.20 -7.76 16 23 C 0.07 0.46 3.87 -26.85 -0.10 0.35 16 24 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 25 C -0.15 -0.60 6.56 -24.48 -0.16 -0.76 16 26 C -0.15 -0.52 7.02 -24.78 -0.17 -0.70 16 27 C 0.05 0.29 7.79 37.88 0.30 0.58 16 28 O -0.35 -3.52 10.61 -54.55 -0.58 -4.10 16 29 C -0.06 -0.82 8.20 -38.96 -0.32 -1.14 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.14 1.50 7.61 -52.48 -0.40 1.10 16 38 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 39 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 40 H 0.41 1.04 8.82 -40.82 -0.36 0.68 16 41 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 42 H 0.09 0.49 8.05 -51.93 -0.42 0.07 16 43 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.15 2.35 6.02 -52.49 -0.32 2.04 16 LS Contribution 400.81 15.07 6.04 6.04 Total: -1.00 -37.85 400.81 -9.78 -47.63 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -6.95 Total: -3.38 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -3.07 Total: -6.71 kcal Atomic # 7 Polarization: -31.88 SS G_CDS: 0.68 Total: -31.20 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -1.47 Total: -29.17 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.85 -9.78 -47.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000030753679.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.259 kcal (2) G-P(sol) polarization free energy of solvation -37.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds