Wall clock time and date at job start Wed Apr 1 2020 04:59:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86807 * 120.00082 * 2 1
4 4 H 1.48506 * 109.46734 * 270.00355 * 3 2 1
5 5 H 1.48495 * 109.46763 * 30.00116 * 3 2 1
6 6 H 1.48491 * 109.47186 * 150.00248 * 3 2 1
7 7 C 1.37880 * 120.00519 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00392 * 179.97438 * 7 2 1
9 9 C 1.50707 * 119.99456 * 359.97438 * 7 2 1
10 10 C 1.53005 * 109.46918 * 180.02562 * 9 7 2
11 11 C 1.53000 * 109.46747 * 180.02562 * 10 9 7
12 12 O 1.45207 * 109.46622 * 179.97438 * 11 10 9
13 13 C 1.34705 * 116.99582 * 179.97438 * 12 11 10
14 14 O 1.21472 * 120.00397 * 0.02562 * 13 12 11
15 15 C 1.47743 * 119.99765 * 180.02562 * 13 12 11
16 16 C 1.39663 * 120.11943 * 0.02562 * 15 13 12
17 17 C 1.37968 * 119.99339 * 180.02562 * 16 15 13
18 18 C 1.38260 * 120.22780 * 0.02562 * 17 16 15
19 19 C 1.38950 * 120.23399 * 359.95930 * 18 17 16
20 20 N 1.39961 * 119.99850 * 179.97438 * 19 18 17
21 21 C 1.34777 * 120.00147 * 213.24785 * 20 19 18
22 22 O 1.21291 * 120.00102 * 5.27340 * 21 20 19
23 23 C 1.50700 * 119.99916 * 185.27014 * 21 20 19
24 24 H 1.08993 * 110.27478 * 305.64078 * 23 21 20
25 25 C 1.54949 * 110.30537 * 67.83543 * 23 21 20
26 26 C 1.55309 * 100.93986 * 155.36004 * 25 23 21
27 27 C 1.54379 * 102.24961 * 325.86464 * 26 25 23
28 28 O 1.43230 * 107.59252 * 21.35827 * 27 26 25
29 29 C 1.38628 * 120.00822 * 359.76396 * 19 18 17
30 30 H 0.96998 * 120.00001 * 359.97438 * 1 2 3
31 31 H 1.08994 * 109.47189 * 60.00335 * 9 7 2
32 32 H 1.09002 * 109.46803 * 299.99756 * 9 7 2
33 33 H 1.08994 * 109.47013 * 60.00109 * 10 9 7
34 34 H 1.08997 * 109.47116 * 300.00212 * 10 9 7
35 35 H 1.08994 * 109.47373 * 60.00210 * 11 10 9
36 36 H 1.09002 * 109.46791 * 299.99526 * 11 10 9
37 37 H 1.08006 * 119.99909 * 359.97438 * 16 15 13
38 38 H 1.08003 * 119.87865 * 179.97438 * 17 16 15
39 39 H 1.07997 * 119.87929 * 179.97438 * 18 17 16
40 40 H 0.96999 * 119.99590 * 33.24324 * 20 19 18
41 41 H 1.09004 * 111.12706 * 273.27819 * 25 23 21
42 42 H 1.09000 * 111.12457 * 37.43978 * 25 23 21
43 43 H 1.09006 * 110.84562 * 207.67751 * 26 25 23
44 44 H 1.09000 * 110.84855 * 84.05452 * 26 25 23
45 45 H 1.09004 * 109.83319 * 261.84060 * 27 26 25
46 46 H 1.09001 * 109.90718 * 140.91707 * 27 26 25
47 47 H 1.08001 * 120.11864 * 180.27902 * 29 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4966 2.0464 -1.4002
5 1 1.4466 2.6526 0.7001
6 1 3.5467 1.4402 0.6999
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0010
9 6 1.2511 -2.4992 -0.0005
10 6 2.2454 -3.6621 -0.0005
11 6 1.4803 -4.9871 -0.0012
12 8 2.4240 -6.0907 -0.0018
13 6 1.9091 -7.3355 -0.0019
14 8 0.7049 -7.4947 -0.0019
15 6 2.8091 -8.5071 -0.0019
16 6 4.1941 -8.3270 -0.0013
17 6 5.0321 -9.4230 -0.0019
18 6 4.5060 -10.7016 -0.0036
19 6 3.1296 -10.8917 -0.0039
20 7 2.6023 -12.1882 -0.0061
21 6 1.4441 -12.4436 -0.6464
22 8 0.9081 -11.5739 -1.3003
23 6 0.8152 -13.8097 -0.5500
24 1 1.5300 -14.5764 -0.8485
25 6 0.3146 -14.0705 0.8930
26 6 -0.7967 -15.1240 0.6335
27 6 -1.3618 -14.6747 -0.7311
28 8 -0.3605 -13.8765 -1.3727
29 6 2.2785 -9.7975 0.0025
30 1 -0.4850 0.8400 0.0004
31 1 0.6241 -2.5567 -0.8903
32 1 0.6248 -2.5571 0.8897
33 1 2.8720 -3.6043 0.8894
34 1 2.8720 -3.6043 -0.8905
35 1 0.8540 -5.0446 -0.8913
36 1 0.8534 -5.0451 0.8886
37 1 4.6089 -7.3298 -0.0013
38 1 6.1029 -9.2815 -0.0019
39 1 5.1672 -11.5554 -0.0044
40 1 3.0704 -12.9029 0.4531
41 1 1.1086 -14.4824 1.5159
42 1 -0.0989 -13.1641 1.3352
43 1 -1.5644 -15.0764 1.4059
44 1 -0.3732 -16.1262 0.5670
45 1 -2.2654 -14.0839 -0.5808
46 1 -1.5883 -15.5469 -1.3444
47 1 1.2084 -9.9432 0.0068
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000030753679.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:59:00
Heat of formation + Delta-G solvation = -147.892384 kcal
Electronic energy + Delta-G solvation = -28874.227198 eV
Core-core repulsion = 24600.841477 eV
Total energy + Delta-G solvation = -4273.385721 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.161 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-41.26533 -40.30602 -39.48317 -38.22578 -36.33999 -35.23997 -33.94532 -32.80005
-31.83339 -31.35869 -31.08673 -29.31555 -27.14434 -24.78905 -24.65600 -22.96909
-22.74860 -22.29628 -20.87035 -20.74327 -20.29912 -18.48378 -18.20520 -17.23491
-16.94160 -16.47182 -16.24309 -16.21209 -16.00054 -15.80628 -15.54146 -15.20802
-14.58904 -14.43079 -14.25802 -14.07349 -13.89243 -13.74778 -13.23802 -13.05158
-12.62249 -12.40106 -12.21993 -12.17262 -12.06621 -11.99107 -11.92612 -11.71952
-11.57310 -10.94945 -10.84364 -10.64376 -10.60191 -10.45536 -10.34951 -10.33322
-9.90350 -9.68399 -9.48228 -9.28890 -9.13502 -8.54873 -8.36045 -6.00680
-4.03719 0.50109 0.98566 2.04645 2.23160 2.61697 2.88701 3.33116
3.34751 3.39103 3.42620 3.59954 3.73499 3.99122 4.19565 4.43532
4.45355 4.46351 4.55942 4.57696 4.63014 4.85141 4.97714 4.99419
5.05874 5.11462 5.15710 5.20550 5.24108 5.35193 5.45934 5.56181
5.63348 5.68443 5.82443 5.94900 6.03371 6.08884 6.14048 6.30933
6.52779 6.58182 6.59057 6.84841 6.88085 7.01930 7.63663 7.63758
7.74982 7.96738 7.98394 8.38830 9.02535 9.60370 11.10753
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.018881 B = 0.001670 C = 0.001560
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1482.581393 B =16758.584230 C =17940.939461
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.894 5.894
2 C 0.056 3.944
3 Si 0.895 3.105
4 H -0.280 1.280
5 H -0.286 1.286
6 H -0.273 1.273
7 C -0.521 4.521
8 H 0.058 0.942
9 C 0.023 3.977
10 C -0.108 4.108
11 C 0.068 3.932
12 O -0.352 6.352
13 C 0.502 3.498
14 O -0.503 6.503
15 C -0.098 4.098
16 C -0.075 4.075
17 C -0.112 4.112
18 C -0.114 4.114
19 C 0.132 3.868
20 N -0.671 5.671
21 C 0.507 3.493
22 O -0.487 6.487
23 C 0.068 3.932
24 H 0.101 0.899
25 C -0.148 4.148
26 C -0.153 4.153
27 C 0.047 3.953
28 O -0.352 6.352
29 C -0.061 4.061
30 H 0.261 0.739
31 H 0.020 0.980
32 H 0.020 0.980
33 H 0.060 0.940
34 H 0.060 0.940
35 H 0.068 0.932
36 H 0.068 0.932
37 H 0.144 0.856
38 H 0.137 0.863
39 H 0.132 0.868
40 H 0.412 0.588
41 H 0.094 0.906
42 H 0.087 0.913
43 H 0.089 0.911
44 H 0.082 0.918
45 H 0.075 0.925
46 H 0.075 0.925
47 H 0.148 0.852
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.585 -36.989 3.601 37.930
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.533 5.533
2 C -0.145 4.145
3 Si 0.723 3.277
4 H -0.206 1.206
5 H -0.212 1.212
6 H -0.198 1.198
7 C -0.560 4.560
8 H 0.076 0.924
9 C -0.014 4.014
10 C -0.146 4.146
11 C -0.004 4.004
12 O -0.269 6.269
13 C 0.346 3.654
14 O -0.392 6.392
15 C -0.100 4.100
16 C -0.093 4.093
17 C -0.131 4.131
18 C -0.134 4.134
19 C 0.038 3.962
20 N -0.319 5.319
21 C 0.293 3.707
22 O -0.358 6.358
23 C 0.007 3.993
24 H 0.118 0.882
25 C -0.185 4.185
26 C -0.191 4.191
27 C -0.030 4.030
28 O -0.270 6.270
29 C -0.081 4.081
30 H 0.071 0.929
31 H 0.038 0.962
32 H 0.038 0.962
33 H 0.079 0.921
34 H 0.079 0.921
35 H 0.086 0.914
36 H 0.086 0.914
37 H 0.162 0.838
38 H 0.155 0.845
39 H 0.149 0.851
40 H 0.248 0.752
41 H 0.113 0.887
42 H 0.106 0.894
43 H 0.107 0.893
44 H 0.101 0.899
45 H 0.094 0.906
46 H 0.093 0.907
47 H 0.166 0.834
Dipole moment (debyes) X Y Z Total
from point charges 6.544 -36.185 2.905 36.886
hybrid contribution 0.461 0.457 0.377 0.750
sum 7.005 -35.728 3.282 36.556
Atomic orbital electron populations
1.69966 1.06084 1.26733 1.50538 1.25034 0.94876 0.99353 0.95228
0.86542 0.79787 0.83250 0.78120 1.20624 1.21216 1.19826 1.21176
0.93121 0.90678 1.50983 0.92411 1.19062 0.93869 0.90728 0.97740
1.21765 0.99939 0.90910 1.01976 1.23544 0.91214 0.83353 1.02319
1.86524 1.42358 1.14702 1.83306 1.21043 0.87082 0.83901 0.73414
1.90844 1.16130 1.86948 1.45286 1.19074 0.93202 0.90994 1.06722
1.21585 0.91812 1.00501 0.95448 1.20968 1.00342 0.91317 1.00439
1.21105 0.92739 0.98384 1.01217 1.17435 0.92027 0.84009 1.02691
1.43354 1.24498 1.09350 1.54700 1.20736 0.80592 0.90430 0.78975
1.90836 1.60772 1.46790 1.37370 1.22774 0.90511 0.93956 0.92068
0.88169 1.23290 0.99498 1.00786 0.94963 1.23133 0.98667 0.99346
0.97937 1.23261 0.91832 0.95062 0.92810 1.88567 1.23668 1.72239
1.42574 1.21223 1.01495 0.89603 0.95797 0.92906 0.96177 0.96200
0.92105 0.92095 0.91371 0.91405 0.83785 0.84511 0.85051 0.75227
0.88722 0.89394 0.89252 0.89943 0.90650 0.90667 0.83390
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -27.18 13.29 55.43 0.74 -26.45 16
2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16
3 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16
4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16
5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16
7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16
8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16
9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16
10 C -0.11 -2.31 5.53 -26.73 -0.15 -2.46 16
11 C 0.07 1.34 5.48 37.16 0.20 1.54 16
12 O -0.35 -6.30 9.47 -40.50 -0.38 -6.69 16
13 C 0.50 8.83 7.90 34.62 0.27 9.11 16
14 O -0.50 -10.31 16.13 -19.24 -0.31 -10.62 16
15 C -0.10 -1.39 5.87 -105.00 -0.62 -2.00 16
16 C -0.07 -0.82 9.61 -39.15 -0.38 -1.20 16
17 C -0.11 -0.90 10.02 -39.67 -0.40 -1.30 16
18 C -0.11 -0.84 9.95 -39.31 -0.39 -1.23 16
19 C 0.13 1.28 6.27 -83.74 -0.53 0.76 16
20 N -0.67 -4.70 5.34 -9.89 -0.05 -4.75 16
21 C 0.51 5.02 6.91 -10.98 -0.08 4.94 16
22 O -0.49 -7.56 14.25 -13.78 -0.20 -7.76 16
23 C 0.07 0.46 3.87 -26.85 -0.10 0.35 16
24 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16
25 C -0.15 -0.60 6.56 -24.48 -0.16 -0.76 16
26 C -0.15 -0.52 7.02 -24.78 -0.17 -0.70 16
27 C 0.05 0.29 7.79 37.88 0.30 0.58 16
28 O -0.35 -3.52 10.61 -54.55 -0.58 -4.10 16
29 C -0.06 -0.82 8.20 -38.96 -0.32 -1.14 16
30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16
31 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16
32 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16
33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16
34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16
35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16
36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16
37 H 0.14 1.50 7.61 -52.48 -0.40 1.10 16
38 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16
39 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16
40 H 0.41 1.04 8.82 -40.82 -0.36 0.68 16
41 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16
42 H 0.09 0.49 8.05 -51.93 -0.42 0.07 16
43 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16
44 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16
45 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16
46 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16
47 H 0.15 2.35 6.02 -52.49 -0.32 2.04 16
LS Contribution 400.81 15.07 6.04 6.04
Total: -1.00 -37.85 400.81 -9.78 -47.63
By element:
Atomic # 1 Polarization: 3.57 SS G_CDS: -6.95 Total: -3.38 kcal
Atomic # 6 Polarization: -3.65 SS G_CDS: -3.07 Total: -6.71 kcal
Atomic # 7 Polarization: -31.88 SS G_CDS: 0.68 Total: -31.20 kcal
Atomic # 8 Polarization: -27.70 SS G_CDS: -1.47 Total: -29.17 kcal
Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal
Total LS contribution 6.04 Total: 6.04 kcal
Total: -37.85 -9.78 -47.63 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000030753679.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -100.259 kcal
(2) G-P(sol) polarization free energy of solvation -37.849 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.108 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.633 kcal
(6) G-S(sol) free energy of system = (1) + (5) -147.892 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds