Wall clock time and date at job start Wed Apr 1 2020 04:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 120.00082 * 2 1 4 4 H 1.48506 * 109.46734 * 270.00355 * 3 2 1 5 5 H 1.48495 * 109.46763 * 30.00116 * 3 2 1 6 6 H 1.48491 * 109.47186 * 150.00248 * 3 2 1 7 7 C 1.37880 * 120.00519 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00392 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99456 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46918 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46747 * 180.02562 * 10 9 7 12 12 O 1.45207 * 109.46622 * 179.97438 * 11 10 9 13 13 C 1.34705 * 116.99582 * 179.97438 * 12 11 10 14 14 O 1.21472 * 120.00397 * 0.02562 * 13 12 11 15 15 C 1.47743 * 119.99765 * 180.02562 * 13 12 11 16 16 C 1.39663 * 120.11943 * 0.02562 * 15 13 12 17 17 C 1.37968 * 119.99339 * 180.02562 * 16 15 13 18 18 C 1.38260 * 120.22780 * 0.02562 * 17 16 15 19 19 C 1.38950 * 120.23399 * 359.95930 * 18 17 16 20 20 N 1.39961 * 119.99850 * 179.97438 * 19 18 17 21 21 C 1.34777 * 120.00147 * 213.24785 * 20 19 18 22 22 O 1.21291 * 120.00102 * 5.27340 * 21 20 19 23 23 C 1.50700 * 119.99916 * 185.27014 * 21 20 19 24 24 H 1.08993 * 110.27478 * 305.64078 * 23 21 20 25 25 C 1.54949 * 110.30537 * 67.83543 * 23 21 20 26 26 C 1.55309 * 100.93986 * 155.36004 * 25 23 21 27 27 C 1.54379 * 102.24961 * 325.86464 * 26 25 23 28 28 O 1.43230 * 107.59252 * 21.35827 * 27 26 25 29 29 C 1.38628 * 120.00822 * 359.76396 * 19 18 17 30 30 H 0.96998 * 120.00001 * 359.97438 * 1 2 3 31 31 H 1.08994 * 109.47189 * 60.00335 * 9 7 2 32 32 H 1.09002 * 109.46803 * 299.99756 * 9 7 2 33 33 H 1.08994 * 109.47013 * 60.00109 * 10 9 7 34 34 H 1.08997 * 109.47116 * 300.00212 * 10 9 7 35 35 H 1.08994 * 109.47373 * 60.00210 * 11 10 9 36 36 H 1.09002 * 109.46791 * 299.99526 * 11 10 9 37 37 H 1.08006 * 119.99909 * 359.97438 * 16 15 13 38 38 H 1.08003 * 119.87865 * 179.97438 * 17 16 15 39 39 H 1.07997 * 119.87929 * 179.97438 * 18 17 16 40 40 H 0.96999 * 119.99590 * 33.24324 * 20 19 18 41 41 H 1.09004 * 111.12706 * 273.27819 * 25 23 21 42 42 H 1.09000 * 111.12457 * 37.43978 * 25 23 21 43 43 H 1.09006 * 110.84562 * 207.67751 * 26 25 23 44 44 H 1.09000 * 110.84855 * 84.05452 * 26 25 23 45 45 H 1.09004 * 109.83319 * 261.84060 * 27 26 25 46 46 H 1.09001 * 109.90718 * 140.91707 * 27 26 25 47 47 H 1.08001 * 120.11864 * 180.27902 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 8 2.4240 -6.0907 -0.0018 13 6 1.9091 -7.3355 -0.0019 14 8 0.7049 -7.4947 -0.0019 15 6 2.8091 -8.5071 -0.0019 16 6 4.1941 -8.3270 -0.0013 17 6 5.0321 -9.4230 -0.0019 18 6 4.5060 -10.7016 -0.0036 19 6 3.1296 -10.8917 -0.0039 20 7 2.6023 -12.1882 -0.0061 21 6 1.4441 -12.4436 -0.6464 22 8 0.9081 -11.5739 -1.3003 23 6 0.8152 -13.8097 -0.5500 24 1 1.5300 -14.5764 -0.8485 25 6 0.3146 -14.0705 0.8930 26 6 -0.7967 -15.1240 0.6335 27 6 -1.3618 -14.6747 -0.7311 28 8 -0.3605 -13.8765 -1.3727 29 6 2.2785 -9.7975 0.0025 30 1 -0.4850 0.8400 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6248 -2.5571 0.8897 33 1 2.8720 -3.6043 0.8894 34 1 2.8720 -3.6043 -0.8905 35 1 0.8540 -5.0446 -0.8913 36 1 0.8534 -5.0451 0.8886 37 1 4.6089 -7.3298 -0.0013 38 1 6.1029 -9.2815 -0.0019 39 1 5.1672 -11.5554 -0.0044 40 1 3.0704 -12.9029 0.4531 41 1 1.1086 -14.4824 1.5159 42 1 -0.0989 -13.1641 1.3352 43 1 -1.5644 -15.0764 1.4059 44 1 -0.3732 -16.1262 0.5670 45 1 -2.2654 -14.0839 -0.5808 46 1 -1.5883 -15.5469 -1.3444 47 1 1.2084 -9.9432 0.0068 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000030753679.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:59 Heat of formation + Delta-G solvation = -172.533065 kcal Electronic energy + Delta-G solvation = -28875.295698 eV Core-core repulsion = 24600.841477 eV Total energy + Delta-G solvation = -4274.454221 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.06457 -41.50771 -40.24385 -39.05966 -37.87150 -36.09555 -35.92419 -33.74661 -33.25179 -32.36962 -31.73783 -29.98108 -29.04137 -26.14653 -25.28269 -24.67619 -23.44196 -22.65528 -22.22212 -22.03410 -21.43997 -19.49472 -18.89750 -18.67066 -18.12355 -17.75338 -17.63893 -17.24449 -16.82348 -16.57673 -16.50926 -16.33559 -15.88588 -15.74726 -15.37529 -14.93124 -14.76868 -14.45391 -14.32167 -14.14192 -14.09797 -13.82690 -13.69268 -13.13765 -12.92977 -12.83996 -12.79773 -12.72021 -12.52249 -12.40764 -12.32907 -12.13799 -11.91861 -11.88817 -11.64534 -11.47751 -11.46230 -11.25593 -11.13306 -10.58575 -10.54465 -10.12877 -9.32512 -8.22426 -6.34604 -0.44042 0.16331 1.25643 1.39950 1.43176 1.44162 1.48903 1.54742 1.71932 2.40999 2.70885 2.88247 3.11340 3.30135 3.46500 3.55069 3.83138 3.87340 3.93729 4.00306 4.02189 4.05968 4.10632 4.12614 4.28702 4.31756 4.34414 4.40997 4.71269 4.72636 4.75724 4.76237 4.84468 4.85407 4.94543 5.03855 5.07757 5.16259 5.22620 5.26269 5.29345 5.36157 5.47226 5.60676 5.78208 5.80160 5.85769 6.16986 6.31582 6.55304 6.81164 7.00906 7.35022 8.89964 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.018881 B = 0.001670 C = 0.001560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.581393 B =16758.584230 C =17940.939461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.543 4.543 8 H 0.068 0.932 9 C 0.024 3.976 10 C -0.091 4.091 11 C 0.076 3.924 12 O -0.345 6.345 13 C 0.498 3.502 14 O -0.546 6.546 15 C -0.129 4.129 16 C -0.076 4.076 17 C -0.099 4.099 18 C -0.085 4.085 19 C 0.127 3.873 20 N -0.648 5.648 21 C 0.501 3.499 22 O -0.557 6.557 23 C 0.067 3.933 24 H 0.141 0.859 25 C -0.143 4.143 26 C -0.143 4.143 27 C 0.035 3.965 28 O -0.397 6.397 29 C -0.085 4.085 30 H 0.264 0.736 31 H -0.006 1.006 32 H -0.004 1.004 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.148 0.852 38 H 0.180 0.820 39 H 0.184 0.816 40 H 0.437 0.563 41 H 0.135 0.865 42 H 0.063 0.937 43 H 0.097 0.903 44 H 0.109 0.891 45 H 0.059 0.941 46 H 0.089 0.911 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.105 -39.628 4.601 41.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.581 4.581 8 H 0.086 0.914 9 C -0.013 4.013 10 C -0.128 4.128 11 C 0.003 3.997 12 O -0.261 6.261 13 C 0.345 3.655 14 O -0.438 6.438 15 C -0.131 4.131 16 C -0.095 4.095 17 C -0.117 4.117 18 C -0.105 4.105 19 C 0.033 3.967 20 N -0.298 5.298 21 C 0.289 3.711 22 O -0.432 6.432 23 C 0.006 3.994 24 H 0.158 0.842 25 C -0.180 4.180 26 C -0.180 4.180 27 C -0.040 4.040 28 O -0.316 6.316 29 C -0.106 4.106 30 H 0.073 0.927 31 H 0.013 0.987 32 H 0.015 0.985 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.166 0.834 38 H 0.198 0.802 39 H 0.201 0.799 40 H 0.279 0.721 41 H 0.153 0.847 42 H 0.081 0.919 43 H 0.115 0.885 44 H 0.128 0.872 45 H 0.077 0.923 46 H 0.107 0.893 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 11.121 -38.882 3.943 40.633 hybrid contribution -0.927 1.155 0.059 1.482 sum 10.194 -37.728 4.003 39.285 Atomic orbital electron populations 1.70113 1.07996 1.27953 1.51415 1.26061 0.95807 1.03690 0.94530 0.85337 0.78651 0.77864 0.78526 1.19746 1.20827 1.18322 1.21622 0.93845 0.91687 1.50952 0.91377 1.18955 0.94313 0.92628 0.95396 1.21457 0.98706 0.89754 1.02890 1.23215 0.91109 0.83677 1.01703 1.86504 1.41429 1.14696 1.83477 1.21876 0.87338 0.84336 0.71914 1.90814 1.18124 1.87275 1.47620 1.18960 0.94113 0.89368 1.10622 1.21756 0.90404 1.02171 0.95176 1.21469 1.01933 0.90322 0.97964 1.21659 0.91671 0.99968 0.97182 1.17593 0.92877 0.83951 1.02281 1.43185 1.23752 1.09086 1.53764 1.21547 0.80629 0.91117 0.77778 1.90818 1.62680 1.49082 1.40667 1.23102 0.90327 0.92488 0.93440 0.84185 1.23346 1.00810 1.00227 0.93634 1.23146 0.98529 1.00244 0.96115 1.23452 0.90870 0.94882 0.94841 1.88522 1.25381 1.73256 1.44487 1.21054 1.00371 0.91006 0.98131 0.92693 0.98713 0.98514 0.90942 0.91196 0.92341 0.91923 0.83385 0.80241 0.79882 0.72145 0.84674 0.91851 0.88488 0.87237 0.92295 0.89276 0.87282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.24 13.29 21.45 0.28 -57.96 16 2 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 3 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 7 C -0.54 -31.43 9.11 25.60 0.23 -31.19 16 8 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 9 C 0.02 1.33 4.97 29.85 0.15 1.48 16 10 C -0.09 -3.94 5.53 30.60 0.17 -3.77 16 11 C 0.08 3.15 5.48 71.98 0.39 3.55 16 12 O -0.34 -12.87 9.47 -56.14 -0.53 -13.40 16 13 C 0.50 18.91 7.90 70.34 0.56 19.47 16 14 O -0.55 -24.73 16.13 19.93 0.32 -24.41 16 15 C -0.13 -3.80 5.87 -20.11 -0.12 -3.92 16 16 C -0.08 -1.57 9.61 22.55 0.22 -1.35 16 17 C -0.10 -1.15 10.02 22.21 0.22 -0.93 16 18 C -0.09 -0.85 9.95 22.45 0.22 -0.62 16 19 C 0.13 2.27 6.27 38.11 0.24 2.51 16 20 N -0.65 -7.78 5.34 -303.59 -1.62 -9.40 16 21 C 0.50 10.03 6.91 87.66 0.61 10.63 16 22 O -0.56 -18.92 14.25 15.41 0.22 -18.70 16 23 C 0.07 0.82 3.87 30.51 0.12 0.94 16 24 H 0.14 0.57 8.14 -2.39 -0.02 0.55 16 25 C -0.14 -0.89 6.56 32.05 0.21 -0.68 16 26 C -0.14 -0.68 7.02 31.86 0.22 -0.46 16 27 C 0.04 0.44 7.79 72.45 0.56 1.00 16 28 O -0.40 -8.26 10.61 -130.50 -1.38 -9.64 16 29 C -0.08 -2.43 8.20 22.67 0.19 -2.25 16 30 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 31 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 32 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 34 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 35 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.15 2.86 7.61 -2.91 -0.02 2.84 16 38 H 0.18 0.67 8.06 -2.91 -0.02 0.65 16 39 H 0.18 0.03 8.06 -2.91 -0.02 0.01 16 40 H 0.44 0.39 8.82 -92.71 -0.82 -0.43 16 41 H 0.14 -0.26 8.14 -2.39 -0.02 -0.28 16 42 H 0.06 0.72 8.05 -2.39 -0.02 0.70 16 43 H 0.10 0.34 8.14 -2.38 -0.02 0.32 16 44 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 45 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 46 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.11 3.97 6.02 -2.91 -0.02 3.95 16 Total: -1.00 -91.60 400.81 4.14 -87.46 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: 0.17 Total: 4.61 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 4.65 Total: -5.32 kcal Atomic # 7 Polarization: -66.03 SS G_CDS: -1.34 Total: -67.36 kcal Atomic # 8 Polarization: -64.77 SS G_CDS: -1.37 Total: -66.15 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -91.60 4.14 -87.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000030753679.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.075 kcal (2) G-P(sol) polarization free energy of solvation -91.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds