Wall clock time and date at job start Wed Apr 1 2020 04:58:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86807 * 120.00082 * 2 1
4 4 H 1.48506 * 109.46734 * 270.00355 * 3 2 1
5 5 H 1.48495 * 109.46763 * 30.00116 * 3 2 1
6 6 H 1.48491 * 109.47186 * 150.00248 * 3 2 1
7 7 C 1.37880 * 120.00519 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00392 * 179.97438 * 7 2 1
9 9 C 1.50707 * 119.99456 * 359.97438 * 7 2 1
10 10 C 1.53005 * 109.46918 * 180.02562 * 9 7 2
11 11 C 1.53000 * 109.46747 * 180.02562 * 10 9 7
12 12 O 1.45207 * 109.46622 * 179.97438 * 11 10 9
13 13 C 1.34705 * 116.99582 * 179.97438 * 12 11 10
14 14 O 1.21472 * 120.00397 * 0.02562 * 13 12 11
15 15 C 1.47743 * 119.99765 * 180.02562 * 13 12 11
16 16 C 1.39663 * 120.11943 * 0.02562 * 15 13 12
17 17 C 1.37968 * 119.99339 * 180.02562 * 16 15 13
18 18 C 1.38260 * 120.22780 * 0.02562 * 17 16 15
19 19 C 1.38950 * 120.23399 * 359.95930 * 18 17 16
20 20 N 1.39961 * 119.99850 * 179.97438 * 19 18 17
21 21 C 1.34777 * 120.00147 * 213.24785 * 20 19 18
22 22 O 1.21291 * 120.00102 * 5.27340 * 21 20 19
23 23 C 1.50700 * 119.99916 * 185.27014 * 21 20 19
24 24 H 1.08993 * 110.27478 * 305.64078 * 23 21 20
25 25 C 1.54949 * 110.30537 * 67.83543 * 23 21 20
26 26 C 1.55309 * 100.93986 * 155.36004 * 25 23 21
27 27 C 1.54379 * 102.24961 * 325.86464 * 26 25 23
28 28 O 1.43230 * 107.59252 * 21.35827 * 27 26 25
29 29 C 1.38628 * 120.00822 * 359.76396 * 19 18 17
30 30 H 0.96998 * 120.00001 * 359.97438 * 1 2 3
31 31 H 1.08994 * 109.47189 * 60.00335 * 9 7 2
32 32 H 1.09002 * 109.46803 * 299.99756 * 9 7 2
33 33 H 1.08994 * 109.47013 * 60.00109 * 10 9 7
34 34 H 1.08997 * 109.47116 * 300.00212 * 10 9 7
35 35 H 1.08994 * 109.47373 * 60.00210 * 11 10 9
36 36 H 1.09002 * 109.46791 * 299.99526 * 11 10 9
37 37 H 1.08006 * 119.99909 * 359.97438 * 16 15 13
38 38 H 1.08003 * 119.87865 * 179.97438 * 17 16 15
39 39 H 1.07997 * 119.87929 * 179.97438 * 18 17 16
40 40 H 0.96999 * 119.99590 * 33.24324 * 20 19 18
41 41 H 1.09004 * 111.12706 * 273.27819 * 25 23 21
42 42 H 1.09000 * 111.12457 * 37.43978 * 25 23 21
43 43 H 1.09006 * 110.84562 * 207.67751 * 26 25 23
44 44 H 1.09000 * 110.84855 * 84.05452 * 26 25 23
45 45 H 1.09004 * 109.83319 * 261.84060 * 27 26 25
46 46 H 1.09001 * 109.90718 * 140.91707 * 27 26 25
47 47 H 1.08001 * 120.11864 * 180.27902 * 29 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4966 2.0464 -1.4002
5 1 1.4466 2.6526 0.7001
6 1 3.5467 1.4402 0.6999
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0010
9 6 1.2511 -2.4992 -0.0005
10 6 2.2454 -3.6621 -0.0005
11 6 1.4803 -4.9871 -0.0012
12 8 2.4240 -6.0907 -0.0018
13 6 1.9091 -7.3355 -0.0019
14 8 0.7049 -7.4947 -0.0019
15 6 2.8091 -8.5071 -0.0019
16 6 4.1941 -8.3270 -0.0013
17 6 5.0321 -9.4230 -0.0019
18 6 4.5060 -10.7016 -0.0036
19 6 3.1296 -10.8917 -0.0039
20 7 2.6023 -12.1882 -0.0061
21 6 1.4441 -12.4436 -0.6464
22 8 0.9081 -11.5739 -1.3003
23 6 0.8152 -13.8097 -0.5500
24 1 1.5300 -14.5764 -0.8485
25 6 0.3146 -14.0705 0.8930
26 6 -0.7967 -15.1240 0.6335
27 6 -1.3618 -14.6747 -0.7311
28 8 -0.3605 -13.8765 -1.3727
29 6 2.2785 -9.7975 0.0025
30 1 -0.4850 0.8400 0.0004
31 1 0.6241 -2.5567 -0.8903
32 1 0.6248 -2.5571 0.8897
33 1 2.8720 -3.6043 0.8894
34 1 2.8720 -3.6043 -0.8905
35 1 0.8540 -5.0446 -0.8913
36 1 0.8534 -5.0451 0.8886
37 1 4.6089 -7.3298 -0.0013
38 1 6.1029 -9.2815 -0.0019
39 1 5.1672 -11.5554 -0.0044
40 1 3.0704 -12.9029 0.4531
41 1 1.1086 -14.4824 1.5159
42 1 -0.0989 -13.1641 1.3352
43 1 -1.5644 -15.0764 1.4059
44 1 -0.3732 -16.1262 0.5670
45 1 -2.2654 -14.0839 -0.5808
46 1 -1.5883 -15.5469 -1.3444
47 1 1.2084 -9.9432 0.0068
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000030753679.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:58:59
Heat of formation + Delta-G solvation = -172.533065 kcal
Electronic energy + Delta-G solvation = -28875.295698 eV
Core-core repulsion = 24600.841477 eV
Total energy + Delta-G solvation = -4274.454221 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.161 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-42.06457 -41.50771 -40.24385 -39.05966 -37.87150 -36.09555 -35.92419 -33.74661
-33.25179 -32.36962 -31.73783 -29.98108 -29.04137 -26.14653 -25.28269 -24.67619
-23.44196 -22.65528 -22.22212 -22.03410 -21.43997 -19.49472 -18.89750 -18.67066
-18.12355 -17.75338 -17.63893 -17.24449 -16.82348 -16.57673 -16.50926 -16.33559
-15.88588 -15.74726 -15.37529 -14.93124 -14.76868 -14.45391 -14.32167 -14.14192
-14.09797 -13.82690 -13.69268 -13.13765 -12.92977 -12.83996 -12.79773 -12.72021
-12.52249 -12.40764 -12.32907 -12.13799 -11.91861 -11.88817 -11.64534 -11.47751
-11.46230 -11.25593 -11.13306 -10.58575 -10.54465 -10.12877 -9.32512 -8.22426
-6.34604 -0.44042 0.16331 1.25643 1.39950 1.43176 1.44162 1.48903
1.54742 1.71932 2.40999 2.70885 2.88247 3.11340 3.30135 3.46500
3.55069 3.83138 3.87340 3.93729 4.00306 4.02189 4.05968 4.10632
4.12614 4.28702 4.31756 4.34414 4.40997 4.71269 4.72636 4.75724
4.76237 4.84468 4.85407 4.94543 5.03855 5.07757 5.16259 5.22620
5.26269 5.29345 5.36157 5.47226 5.60676 5.78208 5.80160 5.85769
6.16986 6.31582 6.55304 6.81164 7.00906 7.35022 8.89964
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.018881 B = 0.001670 C = 0.001560
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1482.581393 B =16758.584230 C =17940.939461
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.935 5.935
2 C -0.003 4.003
3 Si 0.972 3.028
4 H -0.272 1.272
5 H -0.283 1.283
6 H -0.259 1.259
7 C -0.543 4.543
8 H 0.068 0.932
9 C 0.024 3.976
10 C -0.091 4.091
11 C 0.076 3.924
12 O -0.345 6.345
13 C 0.498 3.502
14 O -0.546 6.546
15 C -0.129 4.129
16 C -0.076 4.076
17 C -0.099 4.099
18 C -0.085 4.085
19 C 0.127 3.873
20 N -0.648 5.648
21 C 0.501 3.499
22 O -0.557 6.557
23 C 0.067 3.933
24 H 0.141 0.859
25 C -0.143 4.143
26 C -0.143 4.143
27 C 0.035 3.965
28 O -0.397 6.397
29 C -0.085 4.085
30 H 0.264 0.736
31 H -0.006 1.006
32 H -0.004 1.004
33 H 0.072 0.928
34 H 0.069 0.931
35 H 0.058 0.942
36 H 0.062 0.938
37 H 0.148 0.852
38 H 0.180 0.820
39 H 0.184 0.816
40 H 0.437 0.563
41 H 0.135 0.865
42 H 0.063 0.937
43 H 0.097 0.903
44 H 0.109 0.891
45 H 0.059 0.941
46 H 0.089 0.911
47 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.105 -39.628 4.601 41.690
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.575 5.575
2 C -0.201 4.201
3 Si 0.796 3.204
4 H -0.197 1.197
5 H -0.208 1.208
6 H -0.183 1.183
7 C -0.581 4.581
8 H 0.086 0.914
9 C -0.013 4.013
10 C -0.128 4.128
11 C 0.003 3.997
12 O -0.261 6.261
13 C 0.345 3.655
14 O -0.438 6.438
15 C -0.131 4.131
16 C -0.095 4.095
17 C -0.117 4.117
18 C -0.105 4.105
19 C 0.033 3.967
20 N -0.298 5.298
21 C 0.289 3.711
22 O -0.432 6.432
23 C 0.006 3.994
24 H 0.158 0.842
25 C -0.180 4.180
26 C -0.180 4.180
27 C -0.040 4.040
28 O -0.316 6.316
29 C -0.106 4.106
30 H 0.073 0.927
31 H 0.013 0.987
32 H 0.015 0.985
33 H 0.091 0.909
34 H 0.088 0.912
35 H 0.077 0.923
36 H 0.081 0.919
37 H 0.166 0.834
38 H 0.198 0.802
39 H 0.201 0.799
40 H 0.279 0.721
41 H 0.153 0.847
42 H 0.081 0.919
43 H 0.115 0.885
44 H 0.128 0.872
45 H 0.077 0.923
46 H 0.107 0.893
47 H 0.127 0.873
Dipole moment (debyes) X Y Z Total
from point charges 11.121 -38.882 3.943 40.633
hybrid contribution -0.927 1.155 0.059 1.482
sum 10.194 -37.728 4.003 39.285
Atomic orbital electron populations
1.70113 1.07996 1.27953 1.51415 1.26061 0.95807 1.03690 0.94530
0.85337 0.78651 0.77864 0.78526 1.19746 1.20827 1.18322 1.21622
0.93845 0.91687 1.50952 0.91377 1.18955 0.94313 0.92628 0.95396
1.21457 0.98706 0.89754 1.02890 1.23215 0.91109 0.83677 1.01703
1.86504 1.41429 1.14696 1.83477 1.21876 0.87338 0.84336 0.71914
1.90814 1.18124 1.87275 1.47620 1.18960 0.94113 0.89368 1.10622
1.21756 0.90404 1.02171 0.95176 1.21469 1.01933 0.90322 0.97964
1.21659 0.91671 0.99968 0.97182 1.17593 0.92877 0.83951 1.02281
1.43185 1.23752 1.09086 1.53764 1.21547 0.80629 0.91117 0.77778
1.90818 1.62680 1.49082 1.40667 1.23102 0.90327 0.92488 0.93440
0.84185 1.23346 1.00810 1.00227 0.93634 1.23146 0.98529 1.00244
0.96115 1.23452 0.90870 0.94882 0.94841 1.88522 1.25381 1.73256
1.44487 1.21054 1.00371 0.91006 0.98131 0.92693 0.98713 0.98514
0.90942 0.91196 0.92341 0.91923 0.83385 0.80241 0.79882 0.72145
0.84674 0.91851 0.88488 0.87237 0.92295 0.89276 0.87282
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -58.24 13.29 21.45 0.28 -57.96 16
2 C 0.00 -0.18 5.46 84.66 0.46 0.28 16
3 Si 0.97 44.74 29.54 68.60 2.03 46.77 16
4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16
5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16
6 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16
7 C -0.54 -31.43 9.11 25.60 0.23 -31.19 16
8 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16
9 C 0.02 1.33 4.97 29.85 0.15 1.48 16
10 C -0.09 -3.94 5.53 30.60 0.17 -3.77 16
11 C 0.08 3.15 5.48 71.98 0.39 3.55 16
12 O -0.34 -12.87 9.47 -56.14 -0.53 -13.40 16
13 C 0.50 18.91 7.90 70.34 0.56 19.47 16
14 O -0.55 -24.73 16.13 19.93 0.32 -24.41 16
15 C -0.13 -3.80 5.87 -20.11 -0.12 -3.92 16
16 C -0.08 -1.57 9.61 22.55 0.22 -1.35 16
17 C -0.10 -1.15 10.02 22.21 0.22 -0.93 16
18 C -0.09 -0.85 9.95 22.45 0.22 -0.62 16
19 C 0.13 2.27 6.27 38.11 0.24 2.51 16
20 N -0.65 -7.78 5.34 -303.59 -1.62 -9.40 16
21 C 0.50 10.03 6.91 87.66 0.61 10.63 16
22 O -0.56 -18.92 14.25 15.41 0.22 -18.70 16
23 C 0.07 0.82 3.87 30.51 0.12 0.94 16
24 H 0.14 0.57 8.14 -2.39 -0.02 0.55 16
25 C -0.14 -0.89 6.56 32.05 0.21 -0.68 16
26 C -0.14 -0.68 7.02 31.86 0.22 -0.46 16
27 C 0.04 0.44 7.79 72.45 0.56 1.00 16
28 O -0.40 -8.26 10.61 -130.50 -1.38 -9.64 16
29 C -0.08 -2.43 8.20 22.67 0.19 -2.25 16
30 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16
31 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16
32 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16
33 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16
34 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16
35 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16
36 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16
37 H 0.15 2.86 7.61 -2.91 -0.02 2.84 16
38 H 0.18 0.67 8.06 -2.91 -0.02 0.65 16
39 H 0.18 0.03 8.06 -2.91 -0.02 0.01 16
40 H 0.44 0.39 8.82 -92.71 -0.82 -0.43 16
41 H 0.14 -0.26 8.14 -2.39 -0.02 -0.28 16
42 H 0.06 0.72 8.05 -2.39 -0.02 0.70 16
43 H 0.10 0.34 8.14 -2.38 -0.02 0.32 16
44 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16
45 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16
46 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16
47 H 0.11 3.97 6.02 -2.91 -0.02 3.95 16
Total: -1.00 -91.60 400.81 4.14 -87.46
By element:
Atomic # 1 Polarization: 4.44 SS G_CDS: 0.17 Total: 4.61 kcal
Atomic # 6 Polarization: -9.98 SS G_CDS: 4.65 Total: -5.32 kcal
Atomic # 7 Polarization: -66.03 SS G_CDS: -1.34 Total: -67.36 kcal
Atomic # 8 Polarization: -64.77 SS G_CDS: -1.37 Total: -66.15 kcal
Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal
Total: -91.60 4.14 -87.46 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000030753679.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -85.075 kcal
(2) G-P(sol) polarization free energy of solvation -91.599 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.674 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.141 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.458 kcal
(6) G-S(sol) free energy of system = (1) + (5) -172.533 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds