Wall clock time and date at job start Wed Apr 1 2020 05:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46819 * 239.99679 * 3 2 1 5 5 H 1.48502 * 109.47399 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47524 * 119.99612 * 3 2 1 7 7 C 1.37872 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99890 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00363 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47537 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47184 * 179.97438 * 10 9 7 12 12 O 1.45195 * 109.47349 * 179.97438 * 11 10 9 13 13 C 1.34225 * 117.00368 * 180.02562 * 12 11 10 14 14 O 1.20829 * 120.00231 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00071 * 180.02562 * 13 12 11 16 16 O 1.42902 * 109.46889 * 179.97438 * 15 13 12 17 17 C 1.35905 * 116.99756 * 180.02562 * 16 15 13 18 18 C 1.38803 * 120.02022 * 359.97438 * 17 16 15 19 19 C 1.38167 * 120.08265 * 179.97438 * 18 17 16 20 20 C 1.38164 * 120.12835 * 0.02562 * 19 18 17 21 21 C 1.38886 * 120.03876 * 359.95775 * 20 19 18 22 22 N 1.39923 * 120.04410 * 180.02562 * 21 20 19 23 23 C 1.34772 * 119.99727 * 33.32395 * 22 21 20 24 24 O 1.21284 * 120.00701 * 5.28356 * 23 22 21 25 25 C 1.50707 * 119.99659 * 185.27602 * 23 22 21 26 26 C 1.52997 * 117.49812 * 248.62316 * 25 23 22 27 27 C 1.52992 * 60.00231 * 252.51614 * 26 25 23 28 28 C 1.38584 * 120.01793 * 179.72893 * 17 16 15 29 29 H 0.97003 * 120.00485 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47149 * 59.99781 * 9 7 2 31 31 H 1.08998 * 109.46889 * 300.00058 * 9 7 2 32 32 H 1.08998 * 109.47107 * 60.00189 * 10 9 7 33 33 H 1.08998 * 109.47067 * 299.99935 * 10 9 7 34 34 H 1.09004 * 109.47194 * 59.99956 * 11 10 9 35 35 H 1.09003 * 109.47597 * 300.00267 * 11 10 9 36 36 H 1.09006 * 109.47247 * 60.00163 * 15 13 12 37 37 H 1.08992 * 109.47542 * 299.99683 * 15 13 12 38 38 H 1.07997 * 119.96152 * 359.96072 * 18 17 16 39 39 H 1.08003 * 119.93847 * 180.02562 * 19 18 17 40 40 H 1.08007 * 119.97989 * 179.97438 * 20 19 18 41 41 H 0.96997 * 119.99656 * 213.33279 * 22 21 20 42 42 H 1.08995 * 115.55086 * 34.33619 * 25 23 22 43 43 H 1.09001 * 117.50345 * 0.02562 * 26 25 23 44 44 H 1.09002 * 117.49910 * 145.01870 * 26 25 23 45 45 H 1.09006 * 117.49676 * 252.51459 * 27 26 25 46 46 H 1.08999 * 117.52124 * 107.48522 * 27 26 25 47 47 H 1.08005 * 120.06368 * 359.97438 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0025 12 8 2.4238 -6.0907 0.0031 13 6 1.9108 -7.3310 0.0032 14 8 0.7129 -7.4894 0.0032 15 6 2.8288 -8.5261 0.0044 16 8 2.0505 -9.7246 0.0048 17 6 2.7301 -10.9016 0.0064 18 6 4.1181 -10.9020 0.0071 19 6 4.8102 -12.0978 0.0092 20 6 4.1234 -13.2966 0.0103 21 6 2.7346 -13.3022 0.0101 22 7 2.0389 -14.5163 0.0117 23 6 2.5500 -15.5849 0.6545 24 8 3.5632 -15.4702 1.3112 25 6 1.8623 -16.9224 0.5576 26 6 1.1947 -17.4668 1.8220 27 6 2.4917 -18.0964 1.3101 28 6 2.0375 -12.1019 0.0126 29 1 -0.4851 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6241 -2.5567 0.8903 32 1 2.8712 -3.6040 0.8923 33 1 2.8726 -3.6047 -0.8877 34 1 0.8540 -5.0455 -0.8878 35 1 0.8532 -5.0442 0.8922 36 1 3.4570 -8.5009 0.8949 37 1 3.4583 -8.5017 -0.8851 38 1 4.6578 -9.9665 0.0056 39 1 5.8903 -12.0954 0.0101 40 1 4.6669 -14.2300 0.0116 41 1 1.1890 -14.5887 -0.4500 42 1 1.3822 -17.1360 -0.3973 43 1 1.2525 -16.8574 2.7239 44 1 0.2749 -18.0385 1.6991 45 1 2.4252 -19.0826 0.8504 46 1 3.4033 -17.9016 1.8750 47 1 0.9575 -12.1035 0.0166 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000047755797.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:49 Heat of formation + Delta-G solvation = -112.026901 kcal Electronic energy + Delta-G solvation = -27824.061460 eV Core-core repulsion = 23552.230984 eV Total energy + Delta-G solvation = -4271.830477 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.24315 -40.61398 -39.82214 -38.07505 -36.66857 -36.37358 -35.02930 -34.04495 -31.83829 -31.25035 -29.91451 -28.96861 -26.90569 -25.51524 -23.50260 -23.19177 -23.04190 -22.38775 -20.93391 -20.59199 -20.34968 -18.91404 -18.25538 -17.51038 -17.04405 -16.93894 -16.54751 -16.35319 -16.03292 -15.88416 -15.71091 -15.44043 -15.16146 -14.49586 -14.45229 -14.07766 -14.02589 -13.62899 -13.22397 -13.08402 -12.94082 -12.37410 -12.22425 -12.20559 -12.13840 -11.92291 -11.68862 -11.45411 -11.24705 -11.16193 -10.97934 -10.73401 -10.70210 -10.69161 -10.46245 -10.41073 -10.35770 -9.77340 -9.54371 -9.20647 -8.88959 -8.41995 -8.40587 -6.05402 -4.08866 0.79380 1.08455 1.91355 1.97037 2.15422 2.45596 3.19689 3.31264 3.35722 3.37198 3.40783 3.43314 3.99229 4.15075 4.25400 4.36658 4.42122 4.46099 4.61263 4.65586 4.69679 4.78035 4.88123 4.96443 5.01359 5.11966 5.16342 5.26074 5.30583 5.34707 5.51385 5.52753 5.54501 5.79796 5.85914 5.91707 5.94334 6.12880 6.35904 6.41067 6.48628 6.75715 6.82993 6.93075 6.95834 7.55537 7.57005 7.67711 7.77756 7.92339 8.33014 8.97076 9.55646 11.05977 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.039292 B = 0.001247 C = 0.001220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.433463 B =22442.939943 C =22940.057548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.070 3.930 12 O -0.353 6.353 13 C 0.459 3.541 14 O -0.489 6.489 15 C 0.068 3.932 16 O -0.293 6.293 17 C 0.152 3.848 18 C -0.222 4.222 19 C -0.058 4.058 20 C -0.157 4.157 21 C 0.183 3.817 22 N -0.669 5.669 23 C 0.544 3.456 24 O -0.516 6.516 25 C -0.198 4.198 26 C -0.151 4.151 27 C -0.145 4.145 28 C -0.175 4.175 29 H 0.262 0.738 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.134 0.866 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.414 0.586 42 H 0.128 0.872 43 H 0.101 0.899 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.109 0.891 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.056 -37.376 -0.734 37.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.147 4.147 11 C -0.003 4.003 12 O -0.271 6.271 13 C 0.300 3.700 14 O -0.376 6.376 15 C -0.008 4.008 16 O -0.206 6.206 17 C 0.106 3.894 18 C -0.242 4.242 19 C -0.077 4.077 20 C -0.178 4.178 21 C 0.089 3.911 22 N -0.313 5.313 23 C 0.332 3.668 24 O -0.390 6.390 25 C -0.219 4.219 26 C -0.188 4.188 27 C -0.182 4.182 28 C -0.196 4.196 29 H 0.072 0.928 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.250 0.750 42 H 0.146 0.854 43 H 0.120 0.880 44 H 0.126 0.874 45 H 0.124 0.876 46 H 0.128 0.872 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.020 -37.199 -0.263 37.684 hybrid contribution -0.077 1.108 -0.338 1.161 sum 5.943 -36.092 -0.601 36.583 Atomic orbital electron populations 1.69949 1.06104 1.26927 1.50336 1.25017 0.94866 0.99351 0.95116 0.86604 0.79542 0.82870 0.78681 1.20166 1.21237 1.20160 1.21127 0.93098 0.90665 1.51313 0.92450 1.19054 0.93826 0.90670 0.97754 1.21788 1.00004 0.90769 1.02096 1.23607 0.91130 0.83047 1.02487 1.86445 1.42848 1.14448 1.83311 1.22737 0.88192 0.84953 0.74123 1.90713 1.16556 1.86640 1.43651 1.21936 0.92247 0.81055 1.05538 1.86080 1.34462 1.11379 1.88635 1.18570 0.90299 0.84936 0.95592 1.21321 0.92717 0.99969 1.10163 1.20825 1.00043 0.91042 0.95807 1.21041 0.92295 0.99354 1.05079 1.17302 0.91223 0.84241 0.98322 1.43443 1.24937 1.08991 1.53973 1.19857 0.84414 0.84628 0.77866 1.90738 1.24438 1.84675 1.39180 1.22175 1.07327 0.92780 0.99641 1.22996 0.97550 1.02785 0.95509 1.22994 0.97990 0.95405 1.01821 1.19974 1.00523 0.88505 1.10600 0.92799 0.96178 0.96182 0.92020 0.92016 0.91227 0.91217 0.87485 0.87469 0.84857 0.85075 0.84698 0.74957 0.85367 0.88026 0.87430 0.87602 0.87226 0.84553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.20 5.53 -26.73 -0.15 -2.35 16 11 C 0.07 1.25 5.47 37.16 0.20 1.46 16 12 O -0.35 -5.58 10.22 -39.24 -0.40 -5.98 16 13 C 0.46 6.78 8.03 36.01 0.29 7.07 16 14 O -0.49 -8.97 16.25 -25.48 -0.41 -9.38 16 15 C 0.07 0.70 5.33 36.01 0.19 0.90 16 16 O -0.29 -3.56 9.67 -39.40 -0.38 -3.94 16 17 C 0.15 1.59 6.68 -39.24 -0.26 1.32 16 18 C -0.22 -1.94 9.03 -39.40 -0.36 -2.29 16 19 C -0.06 -0.49 10.03 -39.63 -0.40 -0.89 16 20 C -0.16 -1.49 8.65 -39.37 -0.34 -1.83 16 21 C 0.18 1.66 6.28 -83.72 -0.53 1.13 16 22 N -0.67 -4.44 5.34 -9.88 -0.05 -4.49 16 23 C 0.54 4.19 7.35 -10.98 -0.08 4.11 16 24 O -0.52 -5.84 13.94 5.55 0.08 -5.76 16 25 C -0.20 -0.88 6.19 -91.77 -0.57 -1.45 16 26 C -0.15 -0.58 10.23 -26.74 -0.27 -0.85 16 27 C -0.14 -0.63 10.04 -26.73 -0.27 -0.89 16 28 C -0.18 -1.68 9.90 -39.25 -0.39 -2.07 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.07 1.26 8.13 -51.93 -0.42 0.83 16 35 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 36 H 0.11 0.84 7.66 -51.93 -0.40 0.44 16 37 H 0.11 0.81 7.66 -51.93 -0.40 0.42 16 38 H 0.13 0.88 6.29 -52.49 -0.33 0.54 16 39 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 40 H 0.14 1.34 6.41 -52.48 -0.34 1.00 16 41 H 0.41 1.45 8.82 -40.82 -0.36 1.09 16 42 H 0.13 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.11 0.22 8.14 -51.93 -0.42 -0.21 16 45 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.11 0.65 7.67 -51.93 -0.40 0.25 16 47 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 405.95 15.07 6.12 6.12 Total: -1.00 -35.32 405.95 -9.65 -44.97 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -6.83 Total: -2.45 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -3.48 Total: -9.54 kcal Atomic # 7 Polarization: -31.10 SS G_CDS: 0.68 Total: -30.42 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -1.12 Total: -25.06 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.32 -9.65 -44.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047755797.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.055 kcal (2) G-P(sol) polarization free energy of solvation -35.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds