Wall clock time and date at job start Wed Apr 1 2020 05:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46819 * 239.99679 * 3 2 1 5 5 H 1.48502 * 109.47399 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47524 * 119.99612 * 3 2 1 7 7 C 1.37872 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99890 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00363 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47537 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47184 * 179.97438 * 10 9 7 12 12 O 1.45195 * 109.47349 * 179.97438 * 11 10 9 13 13 C 1.34225 * 117.00368 * 180.02562 * 12 11 10 14 14 O 1.20829 * 120.00231 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00071 * 180.02562 * 13 12 11 16 16 O 1.42902 * 109.46889 * 179.97438 * 15 13 12 17 17 C 1.35905 * 116.99756 * 180.02562 * 16 15 13 18 18 C 1.38803 * 120.02022 * 359.97438 * 17 16 15 19 19 C 1.38167 * 120.08265 * 179.97438 * 18 17 16 20 20 C 1.38164 * 120.12835 * 0.02562 * 19 18 17 21 21 C 1.38886 * 120.03876 * 359.95775 * 20 19 18 22 22 N 1.39923 * 120.04410 * 180.02562 * 21 20 19 23 23 C 1.34772 * 119.99727 * 33.32395 * 22 21 20 24 24 O 1.21284 * 120.00701 * 5.28356 * 23 22 21 25 25 C 1.50707 * 119.99659 * 185.27602 * 23 22 21 26 26 C 1.52997 * 117.49812 * 248.62316 * 25 23 22 27 27 C 1.52992 * 60.00231 * 252.51614 * 26 25 23 28 28 C 1.38584 * 120.01793 * 179.72893 * 17 16 15 29 29 H 0.97003 * 120.00485 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47149 * 59.99781 * 9 7 2 31 31 H 1.08998 * 109.46889 * 300.00058 * 9 7 2 32 32 H 1.08998 * 109.47107 * 60.00189 * 10 9 7 33 33 H 1.08998 * 109.47067 * 299.99935 * 10 9 7 34 34 H 1.09004 * 109.47194 * 59.99956 * 11 10 9 35 35 H 1.09003 * 109.47597 * 300.00267 * 11 10 9 36 36 H 1.09006 * 109.47247 * 60.00163 * 15 13 12 37 37 H 1.08992 * 109.47542 * 299.99683 * 15 13 12 38 38 H 1.07997 * 119.96152 * 359.96072 * 18 17 16 39 39 H 1.08003 * 119.93847 * 180.02562 * 19 18 17 40 40 H 1.08007 * 119.97989 * 179.97438 * 20 19 18 41 41 H 0.96997 * 119.99656 * 213.33279 * 22 21 20 42 42 H 1.08995 * 115.55086 * 34.33619 * 25 23 22 43 43 H 1.09001 * 117.50345 * 0.02562 * 26 25 23 44 44 H 1.09002 * 117.49910 * 145.01870 * 26 25 23 45 45 H 1.09006 * 117.49676 * 252.51459 * 27 26 25 46 46 H 1.08999 * 117.52124 * 107.48522 * 27 26 25 47 47 H 1.08005 * 120.06368 * 359.97438 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0025 12 8 2.4238 -6.0907 0.0031 13 6 1.9108 -7.3310 0.0032 14 8 0.7129 -7.4894 0.0032 15 6 2.8288 -8.5261 0.0044 16 8 2.0505 -9.7246 0.0048 17 6 2.7301 -10.9016 0.0064 18 6 4.1181 -10.9020 0.0071 19 6 4.8102 -12.0978 0.0092 20 6 4.1234 -13.2966 0.0103 21 6 2.7346 -13.3022 0.0101 22 7 2.0389 -14.5163 0.0117 23 6 2.5500 -15.5849 0.6545 24 8 3.5632 -15.4702 1.3112 25 6 1.8623 -16.9224 0.5576 26 6 1.1947 -17.4668 1.8220 27 6 2.4917 -18.0964 1.3101 28 6 2.0375 -12.1019 0.0126 29 1 -0.4851 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6241 -2.5567 0.8903 32 1 2.8712 -3.6040 0.8923 33 1 2.8726 -3.6047 -0.8877 34 1 0.8540 -5.0455 -0.8878 35 1 0.8532 -5.0442 0.8922 36 1 3.4570 -8.5009 0.8949 37 1 3.4583 -8.5017 -0.8851 38 1 4.6578 -9.9665 0.0056 39 1 5.8903 -12.0954 0.0101 40 1 4.6669 -14.2300 0.0116 41 1 1.1890 -14.5887 -0.4500 42 1 1.3822 -17.1360 -0.3973 43 1 1.2525 -16.8574 2.7239 44 1 0.2749 -18.0385 1.6991 45 1 2.4252 -19.0826 0.8504 46 1 3.4033 -17.9016 1.8750 47 1 0.9575 -12.1035 0.0166 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000047755797.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:48 Heat of formation + Delta-G solvation = -132.290753 kcal Electronic energy + Delta-G solvation = -27824.940167 eV Core-core repulsion = 23552.230984 eV Total energy + Delta-G solvation = -4272.709183 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.96374 -41.61774 -40.69216 -38.78421 -37.79789 -37.03173 -35.95283 -35.68165 -33.73159 -32.03522 -30.63096 -29.97527 -28.61542 -26.07133 -25.23458 -23.87533 -23.39091 -23.20673 -22.18822 -21.91679 -21.18100 -19.66292 -18.89851 -18.64176 -18.40445 -18.14297 -17.77001 -17.19031 -16.93672 -16.82835 -16.49067 -16.36698 -16.18634 -15.80461 -15.54102 -15.04946 -14.72216 -14.63605 -14.24977 -14.05190 -13.97505 -13.71497 -13.65200 -13.59734 -12.99578 -12.80502 -12.53987 -12.49802 -12.44439 -12.38725 -12.18683 -12.10723 -11.78361 -11.56764 -11.51766 -11.43708 -11.42740 -11.35454 -11.24262 -10.98526 -10.56269 -9.57861 -9.11007 -8.21276 -6.33025 0.13426 0.37068 0.96679 0.99132 1.37265 1.42576 1.45415 1.53400 1.85693 2.40784 2.51910 2.70318 2.89888 3.12928 3.40690 3.55410 3.79591 3.82315 3.94183 3.95984 3.96728 4.03056 4.03362 4.11770 4.14934 4.19365 4.31520 4.39666 4.47910 4.64416 4.74191 4.79568 4.83450 4.88878 5.01724 5.07475 5.16130 5.19868 5.22584 5.26710 5.33467 5.45749 5.50003 5.63933 5.72648 5.80446 6.18886 6.22754 6.32445 6.57148 6.83006 7.00978 7.36819 8.90724 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.039292 B = 0.001247 C = 0.001220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.433463 B =22442.939943 C =22940.057548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.025 3.975 10 C -0.093 4.093 11 C 0.079 3.921 12 O -0.347 6.347 13 C 0.459 3.541 14 O -0.531 6.531 15 C 0.073 3.927 16 O -0.318 6.318 17 C 0.136 3.864 18 C -0.220 4.220 19 C -0.059 4.059 20 C -0.171 4.171 21 C 0.177 3.823 22 N -0.659 5.659 23 C 0.539 3.461 24 O -0.559 6.559 25 C -0.197 4.197 26 C -0.144 4.144 27 C -0.150 4.150 28 C -0.186 4.186 29 H 0.264 0.736 30 H -0.003 1.003 31 H -0.004 1.004 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.159 0.841 39 H 0.155 0.845 40 H 0.126 0.874 41 H 0.429 0.571 42 H 0.158 0.842 43 H 0.085 0.915 44 H 0.133 0.867 45 H 0.129 0.871 46 H 0.086 0.914 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.686 -38.197 -1.222 38.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.085 0.915 9 C -0.013 4.013 10 C -0.131 4.131 11 C 0.005 3.995 12 O -0.263 6.263 13 C 0.302 3.698 14 O -0.420 6.420 15 C -0.002 4.002 16 O -0.232 6.232 17 C 0.091 3.909 18 C -0.239 4.239 19 C -0.077 4.077 20 C -0.191 4.191 21 C 0.082 3.918 22 N -0.305 5.305 23 C 0.329 3.671 24 O -0.436 6.436 25 C -0.218 4.218 26 C -0.182 4.182 27 C -0.187 4.187 28 C -0.206 4.206 29 H 0.073 0.927 30 H 0.015 0.985 31 H 0.015 0.985 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.157 0.843 37 H 0.160 0.840 38 H 0.177 0.823 39 H 0.172 0.828 40 H 0.144 0.856 41 H 0.268 0.732 42 H 0.176 0.824 43 H 0.104 0.896 44 H 0.151 0.849 45 H 0.147 0.853 46 H 0.105 0.895 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.650 -38.045 -0.767 38.814 hybrid contribution -0.593 1.274 -0.176 1.416 sum 7.057 -36.771 -0.942 37.454 Atomic orbital electron populations 1.70091 1.07922 1.27987 1.51403 1.25989 0.95735 1.03480 0.94546 0.85460 0.78214 0.77827 0.79317 1.18992 1.21027 1.19029 1.21611 0.93824 0.91849 1.51001 0.91512 1.18944 0.94323 0.92523 0.95476 1.21468 0.98734 0.90018 1.02880 1.23214 0.90924 0.83271 1.02070 1.86423 1.41835 1.14637 1.83444 1.23692 0.88427 0.85330 0.72327 1.90703 1.18657 1.86944 1.45690 1.22155 0.90886 0.78533 1.08600 1.86026 1.35788 1.12198 1.89185 1.18758 0.91138 0.84389 0.96623 1.21575 0.92022 1.01106 1.09179 1.21122 1.01279 0.90510 0.94824 1.21159 0.92656 0.99646 1.05679 1.17412 0.91393 0.84896 0.98117 1.43435 1.25311 1.08161 1.53597 1.20497 0.83965 0.85736 0.76941 1.90714 1.26428 1.85412 1.41079 1.22272 1.07428 0.90779 1.01299 1.23071 0.98319 1.02323 0.94458 1.23046 0.97365 0.96399 1.01921 1.20104 1.00894 0.88708 1.10943 0.92704 0.98483 0.98540 0.91185 0.91106 0.91712 0.91796 0.84347 0.84042 0.82302 0.82774 0.85579 0.73223 0.82404 0.89605 0.84909 0.85331 0.89516 0.84214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.58 13.29 21.44 0.28 -56.29 16 2 C 0.00 0.03 5.46 84.65 0.46 0.49 16 3 Si 0.97 43.53 29.54 68.60 2.03 45.56 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.55 -30.44 9.11 25.60 0.23 -30.21 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.02 1.27 4.97 29.85 0.15 1.42 16 10 C -0.09 -3.73 5.53 30.59 0.17 -3.56 16 11 C 0.08 2.81 5.47 71.98 0.39 3.20 16 12 O -0.35 -10.42 10.22 -51.37 -0.53 -10.94 16 13 C 0.46 12.99 8.03 71.24 0.57 13.56 16 14 O -0.53 -19.53 16.25 28.39 0.46 -19.07 16 15 C 0.07 1.32 5.33 71.24 0.38 1.70 16 16 O -0.32 -7.31 9.67 -73.39 -0.71 -8.02 16 17 C 0.14 2.66 6.68 22.49 0.15 2.82 16 18 C -0.22 -3.31 9.03 22.39 0.20 -3.11 16 19 C -0.06 -0.89 10.03 22.24 0.22 -0.67 16 20 C -0.17 -3.18 8.65 22.41 0.19 -2.98 16 21 C 0.18 3.15 6.28 38.14 0.24 3.39 16 22 N -0.66 -8.49 5.34 -303.55 -1.62 -10.11 16 23 C 0.54 8.24 7.35 87.66 0.64 8.88 16 24 O -0.56 -13.12 13.94 -3.04 -0.04 -13.16 16 25 C -0.20 -1.50 6.19 -11.54 -0.07 -1.57 16 26 C -0.14 -0.92 10.23 30.59 0.31 -0.61 16 27 C -0.15 -1.17 10.04 30.59 0.31 -0.86 16 28 C -0.19 -3.49 9.90 22.49 0.22 -3.27 16 29 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 30 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 31 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 32 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.06 2.37 8.13 -2.38 -0.02 2.35 16 35 H 0.06 2.35 8.13 -2.39 -0.02 2.33 16 36 H 0.14 1.66 7.66 -2.38 -0.02 1.64 16 37 H 0.14 1.60 7.66 -2.39 -0.02 1.59 16 38 H 0.16 1.47 6.29 -2.91 -0.02 1.45 16 39 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 40 H 0.13 2.55 6.41 -2.91 -0.02 2.54 16 41 H 0.43 2.61 8.82 -92.71 -0.82 1.80 16 42 H 0.16 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16 45 H 0.13 0.39 8.14 -2.38 -0.02 0.37 16 46 H 0.09 1.09 7.67 -2.39 -0.02 1.08 16 47 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -78.67 405.95 4.84 -73.84 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 0.18 Total: 9.58 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: 4.78 Total: -11.37 kcal Atomic # 7 Polarization: -65.07 SS G_CDS: -1.34 Total: -66.40 kcal Atomic # 8 Polarization: -50.38 SS G_CDS: -0.82 Total: -51.20 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -78.67 4.84 -73.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047755797.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.453 kcal (2) G-P(sol) polarization free energy of solvation -78.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds