Wall clock time and date at job start Wed Apr 1 2020 04:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86802 * 119.99935 * 2 1 4 4 H 1.48497 * 109.47019 * 240.00087 * 3 2 1 5 5 H 1.48497 * 109.46800 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46798 * 120.00406 * 3 2 1 7 7 C 1.39908 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00473 * 164.82678 * 7 2 1 9 9 C 1.41152 * 119.99599 * 345.09521 * 7 2 1 10 10 C 1.40870 * 120.16892 * 334.72175 * 9 7 2 11 11 C 1.36372 * 119.83233 * 179.73957 * 10 9 7 12 12 C 1.39485 * 120.16669 * 0.54462 * 11 10 9 13 13 N 1.39234 * 119.83196 * 179.71547 * 12 11 10 14 14 C 1.34777 * 120.00537 * 35.85028 * 13 12 11 15 15 O 1.21282 * 119.99625 * 355.51303 * 14 13 12 16 16 C 1.50694 * 120.00157 * 175.51724 * 14 13 12 17 17 O 1.45204 * 109.46984 * 179.97438 * 16 14 13 18 18 C 1.34231 * 116.99666 * 179.97438 * 17 16 14 19 19 O 1.20818 * 120.00240 * 359.97438 * 18 17 16 20 20 C 1.50704 * 119.99688 * 179.97438 * 18 17 16 21 21 C 1.52997 * 109.46889 * 179.97438 * 20 18 17 22 22 C 1.53006 * 109.46877 * 179.97438 * 21 20 18 23 23 H 1.08996 * 109.82300 * 305.57047 * 22 21 20 24 24 C 1.54376 * 109.83162 * 184.58746 * 22 21 20 25 25 C 1.55300 * 102.25527 * 219.13343 * 24 22 21 26 26 C 1.54945 * 100.94467 * 34.13298 * 25 24 22 27 27 O 1.43242 * 109.82897 * 66.45848 * 22 21 20 28 28 C 1.39486 * 120.33101 * 359.72834 * 12 11 10 29 29 C 1.36375 * 120.17023 * 359.97438 * 28 12 11 30 30 H 0.96993 * 120.00290 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.08025 * 0.02562 * 10 9 7 32 32 H 1.07999 * 119.91700 * 180.29207 * 11 10 9 33 33 H 0.97007 * 119.99543 * 215.85169 * 13 12 11 34 34 H 1.09001 * 109.47184 * 299.99474 * 16 14 13 35 35 H 1.08995 * 109.47433 * 59.99655 * 16 14 13 36 36 H 1.09003 * 109.47298 * 300.00287 * 20 18 17 37 37 H 1.09004 * 109.46495 * 60.00132 * 20 18 17 38 38 H 1.08994 * 109.47385 * 299.99781 * 21 20 18 39 39 H 1.09004 * 109.47258 * 60.00828 * 21 20 18 40 40 H 1.08999 * 110.84872 * 337.32577 * 24 22 21 41 41 H 1.09005 * 110.84651 * 100.93944 * 24 22 21 42 42 H 1.09000 * 111.12632 * 276.21399 * 25 24 22 43 43 H 1.09006 * 111.16041 * 152.06876 * 25 24 22 44 44 H 1.08990 * 110.31404 * 204.64337 * 26 25 24 45 45 H 1.09004 * 110.30768 * 82.46559 * 26 25 24 46 46 H 1.08000 * 119.91072 * 180.02562 * 28 12 11 47 47 H 1.07998 * 120.08186 * 179.97438 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0964 1.6964 -1.2125 5 1 1.2776 2.7464 0.0006 6 1 3.0965 1.6963 1.2125 7 6 2.0083 -1.2116 -0.0005 8 1 3.0600 -1.2279 -0.2453 9 6 1.3381 -2.4136 0.3134 10 6 0.1801 -2.3899 1.1152 11 6 -0.4650 -3.5547 1.4099 12 6 0.0254 -4.7686 0.9288 13 7 -0.6354 -5.9543 1.2388 14 6 -1.9803 -5.9738 1.3243 15 8 -2.6101 -4.9434 1.2120 16 6 -2.7016 -7.2758 1.5597 17 8 -4.1323 -7.0339 1.6128 18 6 -4.9233 -8.0989 1.8172 19 8 -4.4363 -9.1970 1.9470 20 6 -6.4187 -7.9250 1.8848 21 6 -7.0799 -9.2839 2.1234 22 6 -8.5981 -9.1072 2.1927 23 1 -8.8492 -8.3587 2.9442 24 6 -9.2664 -10.4529 2.5473 25 6 -10.5342 -10.4378 1.6506 26 6 -10.0022 -9.6912 0.4015 27 8 -9.0987 -8.6992 0.9141 28 6 1.1747 -4.8007 0.1389 29 6 1.8272 -3.6434 -0.1691 30 1 -0.4850 0.8400 0.0004 31 1 -0.1984 -1.4511 1.4919 32 1 -1.3555 -3.5376 2.0206 33 1 -0.1277 -6.7664 1.3932 34 1 -2.4795 -7.9664 0.7461 35 1 -2.3713 -7.7086 2.5040 36 1 -6.6694 -7.2499 2.7031 37 1 -6.7785 -7.5062 0.9450 38 1 -6.8293 -9.9586 1.3049 39 1 -6.7201 -9.7031 3.0631 40 1 -8.6171 -11.2889 2.2871 41 1 -9.5378 -10.4850 3.6025 42 1 -11.3440 -9.8831 2.1245 43 1 -10.8499 -11.4502 1.3984 44 1 -10.8238 -9.2145 -0.1329 45 1 -9.4728 -10.3818 -0.2551 46 1 1.5482 -5.7444 -0.2303 47 1 2.7171 -3.6700 -0.7804 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000047802205.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:26 Heat of formation + Delta-G solvation = -172.713696 kcal Electronic energy + Delta-G solvation = -28593.487633 eV Core-core repulsion = 24319.025579 eV Total energy + Delta-G solvation = -4274.462054 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.85813 -41.04770 -40.36701 -39.08699 -37.63302 -36.22727 -34.80397 -34.68773 -33.00396 -31.65680 -31.26363 -30.26419 -29.20689 -26.68512 -25.53175 -23.37533 -22.99645 -22.65094 -22.08094 -21.38896 -21.26989 -19.27224 -18.90700 -18.83911 -18.15255 -17.73456 -17.57904 -17.31716 -16.99600 -16.57661 -16.32511 -15.77707 -15.45072 -15.24740 -15.09697 -14.82348 -14.48082 -14.42113 -14.13804 -13.96502 -13.82470 -13.68172 -13.53462 -13.34126 -12.99039 -12.78221 -12.71453 -12.63663 -12.32409 -12.29283 -11.98889 -11.94423 -11.84195 -11.77415 -11.73999 -11.66375 -11.59921 -11.25754 -10.84537 -10.49340 -10.46431 -9.46535 -8.91112 -8.61044 -6.29392 0.76952 1.07753 1.13933 1.24649 1.38002 1.42740 1.51670 1.69272 2.20809 2.41897 2.75700 2.92717 3.53555 3.59358 3.65914 3.74235 3.76865 3.98087 4.01336 4.02773 4.09190 4.19320 4.31188 4.41264 4.43572 4.47652 4.55539 4.70085 4.83445 4.85595 4.94778 4.96403 4.96683 5.08565 5.09409 5.15121 5.16074 5.26888 5.30618 5.34161 5.40148 5.67732 5.84962 6.06155 6.09544 6.12711 6.32263 6.54610 6.66397 6.67994 6.91638 6.99211 7.29908 8.33506 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.021987 B = 0.001553 C = 0.001477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.167904 B =18025.970828 C =18948.963109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.028 3.972 3 Si 0.987 3.013 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.492 4.492 8 H 0.083 0.917 9 C 0.073 3.927 10 C -0.182 4.182 11 C -0.100 4.100 12 C 0.000 4.000 13 N -0.633 5.633 14 C 0.496 3.504 15 O -0.560 6.560 16 C 0.060 3.940 17 O -0.353 6.353 18 C 0.465 3.535 19 O -0.529 6.529 20 C -0.107 4.107 21 C -0.110 4.110 22 C 0.075 3.925 23 H 0.093 0.907 24 C -0.149 4.149 25 C -0.152 4.152 26 C 0.039 3.961 27 O -0.403 6.403 28 C -0.094 4.094 29 C -0.224 4.224 30 H 0.287 0.713 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.422 0.578 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.060 0.940 46 H 0.137 0.863 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.653 -21.406 5.429 27.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.186 4.186 3 Si 0.808 3.192 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.521 4.521 8 H 0.102 0.898 9 C 0.071 3.929 10 C -0.202 4.202 11 C -0.120 4.120 12 C -0.093 4.093 13 N -0.281 5.281 14 C 0.284 3.716 15 O -0.438 6.438 16 C -0.017 4.017 17 O -0.268 6.268 18 C 0.310 3.690 19 O -0.419 6.419 20 C -0.144 4.144 21 C -0.148 4.148 22 C 0.018 3.982 23 H 0.110 0.890 24 C -0.187 4.187 25 C -0.189 4.189 26 C -0.037 4.037 27 O -0.323 6.323 28 C -0.114 4.114 29 C -0.244 4.244 30 H 0.098 0.902 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.260 0.740 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.130 0.870 38 H 0.084 0.916 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.117 0.883 42 H 0.102 0.898 43 H 0.115 0.885 44 H 0.109 0.891 45 H 0.078 0.922 46 H 0.155 0.845 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -17.100 -20.695 5.258 27.356 hybrid contribution 0.594 0.443 -0.047 0.743 sum -16.506 -20.252 5.212 26.641 Atomic orbital electron populations 1.69927 1.09264 1.30576 1.35809 1.26894 0.95476 1.04976 0.91267 0.85174 0.78594 0.75216 0.80245 1.17984 1.19613 1.18234 1.19846 0.97616 0.91976 1.42689 0.89846 1.18049 0.91891 0.93697 0.89286 1.20960 0.99775 0.96621 1.02886 1.20597 0.98618 0.92714 1.00070 1.17223 0.98535 0.85357 1.08183 1.42597 1.05268 1.11419 1.68774 1.20751 0.82787 0.90788 0.77313 1.90753 1.67215 1.36010 1.49844 1.22703 0.77937 0.94150 1.06891 1.86595 1.18763 1.39022 1.82462 1.24463 0.91768 0.81458 0.71294 1.90638 1.77138 1.27083 1.47042 1.21492 0.84032 1.01759 1.07166 1.21812 0.94448 0.94771 1.03764 1.22897 0.92044 0.97447 0.85796 0.88955 1.23188 0.96797 0.96576 1.02111 1.23266 0.97978 1.02386 0.95291 1.23557 0.92595 0.90818 0.96724 1.88432 1.63263 1.45531 1.35123 1.20425 0.95325 0.98465 0.97161 1.20847 1.03962 0.92487 1.07103 0.90249 0.88281 0.88681 0.73953 0.85775 0.85461 0.85779 0.87037 0.91612 0.89233 0.90072 0.88334 0.89839 0.88478 0.89133 0.92212 0.84485 0.86983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.86 10.82 21.82 0.24 -45.63 16 2 C 0.03 1.46 5.19 85.24 0.44 1.90 16 3 Si 0.99 38.99 29.59 68.60 2.03 41.02 16 4 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 5 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 6 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 7 C -0.49 -26.81 9.05 23.39 0.21 -26.60 16 8 H 0.08 4.26 7.89 -2.91 -0.02 4.24 16 9 C 0.07 4.05 5.58 -21.27 -0.12 3.93 16 10 C -0.18 -10.30 8.63 22.48 0.19 -10.11 16 11 C -0.10 -5.18 8.61 22.13 0.19 -4.99 16 12 C 0.00 0.01 6.30 38.57 0.24 0.25 16 13 N -0.63 -20.76 5.30 -303.11 -1.61 -22.37 16 14 C 0.50 17.32 7.74 87.66 0.68 18.00 16 15 O -0.56 -26.14 13.95 15.76 0.22 -25.92 16 16 C 0.06 1.48 5.95 71.23 0.42 1.91 16 17 O -0.35 -10.02 9.76 -45.07 -0.44 -10.46 16 18 C 0.47 10.96 7.96 71.24 0.57 11.53 16 19 O -0.53 -13.72 15.73 21.99 0.35 -13.37 16 20 C -0.11 -1.86 5.72 29.85 0.17 -1.69 16 21 C -0.11 -1.60 4.07 30.60 0.12 -1.47 16 22 C 0.08 0.94 3.52 31.06 0.11 1.05 16 23 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 24 C -0.15 -1.22 6.54 31.85 0.21 -1.02 16 25 C -0.15 -1.13 7.15 32.05 0.23 -0.90 16 26 C 0.04 0.46 7.78 72.65 0.56 1.02 16 27 O -0.40 -6.88 10.63 -148.98 -1.58 -8.47 16 28 C -0.09 -3.90 9.90 22.14 0.22 -3.68 16 29 C -0.22 -10.72 9.74 22.48 0.22 -10.50 16 30 H 0.29 14.47 8.30 -92.71 -0.77 13.70 16 31 H 0.10 5.95 6.09 -2.91 -0.02 5.93 16 32 H 0.10 5.05 6.26 -2.91 -0.02 5.03 16 33 H 0.42 9.45 8.82 -92.70 -0.82 8.63 16 34 H 0.12 2.47 8.13 -2.39 -0.02 2.45 16 35 H 0.13 2.42 8.13 -2.39 -0.02 2.40 16 36 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.11 2.05 7.88 -2.39 -0.02 2.03 16 38 H 0.07 1.11 8.10 -2.39 -0.02 1.09 16 39 H 0.09 1.17 8.10 -2.39 -0.02 1.15 16 40 H 0.08 0.66 7.85 -2.39 -0.02 0.64 16 41 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 42 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 44 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 46 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 47 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -76.03 395.20 4.06 -71.98 By element: Atomic # 1 Polarization: 34.40 SS G_CDS: 0.18 Total: 34.58 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: 4.68 Total: -21.36 kcal Atomic # 7 Polarization: -66.63 SS G_CDS: -1.37 Total: -68.00 kcal Atomic # 8 Polarization: -56.76 SS G_CDS: -1.46 Total: -58.22 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Total: -76.03 4.06 -71.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047802205.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.739 kcal (2) G-P(sol) polarization free energy of solvation -76.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds