Wall clock time and date at job start Wed Apr 1 2020 04:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86807 * 119.99848 * 2 1 4 4 H 1.48493 * 109.47039 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47044 * 299.99904 * 3 2 1 6 6 H 1.48503 * 109.46964 * 59.99760 * 3 2 1 7 7 C 1.39899 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99823 * 175.56204 * 7 2 1 9 9 C 1.41158 * 120.00091 * 355.56269 * 7 2 1 10 10 C 1.40874 * 120.16222 * 214.78080 * 9 7 2 11 11 C 1.36364 * 119.82436 * 180.02562 * 10 9 7 12 12 C 1.39486 * 120.17264 * 359.97438 * 11 10 9 13 13 N 1.39237 * 119.83569 * 179.97438 * 12 11 10 14 14 C 1.34782 * 119.99850 * 35.29494 * 13 12 11 15 15 O 1.21285 * 119.99726 * 355.70198 * 14 13 12 16 16 C 1.50696 * 120.00226 * 175.70624 * 14 13 12 17 17 O 1.45195 * 109.47237 * 179.97438 * 16 14 13 18 18 C 1.34231 * 116.99822 * 180.02562 * 17 16 14 19 19 O 1.20828 * 120.00128 * 359.97438 * 18 17 16 20 20 C 1.50701 * 120.00023 * 180.02562 * 18 17 16 21 21 O 1.42905 * 109.47338 * 180.02562 * 20 18 17 22 22 C 1.42897 * 113.99924 * 180.02562 * 21 20 18 23 23 C 1.54886 * 110.48782 * 93.23959 * 22 21 20 24 24 C 1.55246 * 102.58482 * 156.67490 * 23 22 21 25 25 C 1.54265 * 104.23122 * 322.08242 * 24 23 22 26 26 C 1.53875 * 106.59842 * 23.61176 * 25 24 23 27 27 C 1.39480 * 120.33154 * 0.25792 * 12 11 10 28 28 C 1.36381 * 120.16509 * 359.48089 * 27 12 11 29 29 H 0.96999 * 119.99960 * 0.02562 * 1 2 3 30 30 H 1.07993 * 120.08528 * 0.02562 * 10 9 7 31 31 H 1.08006 * 119.91613 * 179.97438 * 11 10 9 32 32 H 0.97004 * 120.00105 * 215.28966 * 13 12 11 33 33 H 1.09008 * 109.47199 * 59.99785 * 16 14 13 34 34 H 1.09005 * 109.47115 * 300.00080 * 16 14 13 35 35 H 1.09000 * 109.47283 * 59.99752 * 20 18 17 36 36 H 1.09003 * 109.47155 * 300.00045 * 20 18 17 37 37 H 1.09008 * 110.43255 * 330.69558 * 22 21 20 38 38 H 1.08999 * 110.75569 * 275.06360 * 23 22 21 39 39 H 1.08998 * 110.75617 * 38.43872 * 23 22 21 40 40 H 1.08992 * 110.46399 * 203.39165 * 24 23 22 41 41 H 1.08996 * 110.57993 * 80.82966 * 24 23 22 42 42 H 1.08996 * 110.03451 * 264.32694 * 25 24 23 43 43 H 1.08999 * 110.06928 * 142.91877 * 25 24 23 44 44 H 1.08992 * 110.03254 * 240.71224 * 26 25 24 45 45 H 1.09004 * 110.07326 * 119.30366 * 26 25 24 46 46 H 1.07992 * 119.91417 * 179.74097 * 27 12 11 47 47 H 1.08007 * 120.08100 * 180.25957 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7027 1.3465 0.0006 5 1 1.8840 2.3965 -1.2125 6 1 1.8839 2.3965 1.2125 7 6 2.0083 -1.2115 0.0005 8 1 3.0859 -1.2129 -0.0718 9 6 1.3058 -2.4322 0.0957 10 6 1.8651 -3.5180 0.7976 11 6 1.1806 -4.6942 0.8847 12 6 -0.0704 -4.8236 0.2816 13 7 -0.7629 -6.0280 0.3745 14 6 -0.6804 -6.7678 1.4981 15 8 0.0574 -6.4245 2.3973 16 6 -1.5049 -8.0215 1.6370 17 8 -1.2401 -8.6346 2.9262 18 6 -1.8998 -9.7691 3.2085 19 8 -2.6732 -10.2341 2.4051 20 6 -1.6766 -10.4621 4.5280 21 8 -2.4853 -11.6386 4.5909 22 6 -2.3484 -12.3735 5.8088 23 6 -3.4273 -11.9359 6.8302 24 6 -3.5299 -13.1718 7.7642 25 6 -3.3847 -14.3783 6.8140 26 6 -2.6334 -13.8708 5.5707 27 6 -0.6285 -3.7545 -0.4192 28 6 0.0417 -2.5703 -0.5104 29 1 -0.4850 0.8400 -0.0004 30 1 2.8334 -3.4191 1.2654 31 1 1.6083 -5.5277 1.4222 32 1 -1.3048 -6.3345 -0.3694 33 1 -1.2416 -8.7195 0.8422 34 1 -2.5631 -7.7704 1.5641 35 1 -1.9482 -9.7900 5.3419 36 1 -0.6262 -10.7383 4.6202 37 1 -1.3505 -12.2367 6.2256 38 1 -3.1005 -11.0560 7.3843 39 1 -4.3781 -11.7486 6.3314 40 1 -4.4988 -13.1933 8.2628 41 1 -2.7242 -13.1652 8.4983 42 1 -4.3689 -14.7502 6.5295 43 1 -2.8127 -15.1695 7.2987 44 1 -3.2531 -13.9963 4.6829 45 1 -1.6964 -14.4149 5.4516 46 1 -1.5957 -3.8635 -0.8871 47 1 -0.3936 -1.7420 -1.0498 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051731432.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:00 Heat of formation + Delta-G solvation = -147.426330 kcal Electronic energy + Delta-G solvation = -28470.478953 eV Core-core repulsion = 24197.113442 eV Total energy + Delta-G solvation = -4273.365511 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.83400 -39.68821 -39.21575 -37.40762 -36.71070 -36.08313 -34.50248 -33.01263 -30.39784 -29.64505 -29.31818 -29.10954 -28.15491 -27.06911 -24.76953 -21.96422 -21.41613 -21.23805 -20.85964 -20.74387 -19.83097 -18.07027 -17.78365 -17.34631 -17.20407 -17.08005 -16.35802 -16.09425 -15.77148 -15.64017 -15.18703 -14.89225 -14.53111 -14.03925 -13.87609 -13.79955 -13.35636 -13.15760 -12.82554 -12.71194 -12.65031 -12.45911 -12.15882 -11.98766 -11.75331 -11.67389 -11.56501 -11.42115 -11.20924 -11.10664 -11.05672 -10.91089 -10.90148 -10.76799 -10.67001 -10.05805 -10.03756 -9.53623 -9.50991 -9.19825 -8.94786 -7.59280 -6.92756 -6.65474 -4.38274 1.84386 1.91871 2.44215 2.93176 3.05197 3.08432 3.13608 3.21188 3.34676 3.72581 3.95762 4.08880 4.13037 4.45182 4.46668 4.65428 4.67556 4.71982 4.78825 4.82326 4.95424 4.98535 4.99942 5.01435 5.12059 5.18449 5.39271 5.46426 5.58967 5.61077 5.64657 5.73685 5.86394 6.07438 6.15288 6.39082 6.64330 6.66892 6.85162 7.02218 7.14441 7.24716 7.48432 7.59530 7.67165 7.80437 8.02229 8.16646 8.27102 8.54744 8.63854 8.89174 8.94927 10.25553 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.030253 B = 0.001447 C = 0.001421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.302522 B =19344.878195 C =19704.984676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.459 4.459 8 H 0.077 0.923 9 C 0.101 3.899 10 C -0.205 4.205 11 C -0.084 4.084 12 C 0.000 4.000 13 N -0.645 5.645 14 C 0.499 3.501 15 O -0.509 6.509 16 C 0.054 3.946 17 O -0.328 6.328 18 C 0.462 3.538 19 O -0.489 6.489 20 C 0.073 3.927 21 O -0.359 6.359 22 C 0.082 3.918 23 C -0.150 4.150 24 C -0.124 4.124 25 C -0.123 4.123 26 C -0.123 4.123 27 C -0.118 4.118 28 C -0.141 4.141 29 H 0.278 0.722 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.398 0.602 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.092 0.908 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.907 -22.497 9.759 25.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.490 4.490 8 H 0.095 0.905 9 C 0.098 3.902 10 C -0.225 4.225 11 C -0.104 4.104 12 C -0.092 4.092 13 N -0.289 5.289 14 C 0.284 3.716 15 O -0.384 6.384 16 C -0.024 4.024 17 O -0.244 6.244 18 C 0.304 3.696 19 O -0.375 6.375 20 C -0.005 4.005 21 O -0.278 6.278 22 C 0.025 3.975 23 C -0.188 4.188 24 C -0.161 4.161 25 C -0.160 4.160 26 C -0.160 4.160 27 C -0.138 4.138 28 C -0.161 4.161 29 H 0.089 0.911 30 H 0.115 0.885 31 H 0.126 0.874 32 H 0.232 0.768 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.111 0.889 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.937 -22.277 10.011 25.389 hybrid contribution -0.012 0.739 -0.228 0.774 sum -6.949 -21.538 9.782 24.655 Atomic orbital electron populations 1.69767 1.07311 1.28690 1.38011 1.25893 0.94947 1.01233 0.92510 0.86137 0.80607 0.80773 0.78416 1.18547 1.19972 1.19967 1.19555 0.94824 0.90195 1.44427 0.90480 1.17755 0.92277 0.92035 0.88120 1.20807 1.01287 0.94901 1.05538 1.20404 0.92708 0.97917 0.99367 1.17228 0.94254 0.85534 1.12201 1.42779 1.49079 1.21396 1.15683 1.19912 0.83933 0.84713 0.83073 1.90738 1.37995 1.70038 1.39618 1.22753 1.01279 0.94350 0.83991 1.86508 1.63229 1.37368 1.37268 1.23233 0.78088 0.79171 0.89135 1.90700 1.33721 1.64285 1.48834 1.21681 0.97249 0.88740 0.92786 1.87997 1.64999 1.36393 1.38403 1.23165 0.98574 0.91788 0.83996 1.23095 1.00317 0.98235 0.97121 1.22329 1.02181 0.94151 0.97473 1.22086 1.00695 0.97893 0.95356 1.22184 1.01333 0.93122 0.99387 1.20313 0.98376 0.93025 1.02057 1.21198 0.97288 0.95527 1.02129 0.91136 0.88480 0.87422 0.76806 0.88218 0.88077 0.88565 0.88531 0.90869 0.91103 0.90148 0.91219 0.91358 0.91394 0.91470 0.90176 0.91031 0.88946 0.84943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.87 10.59 55.55 0.59 -20.28 16 2 C 0.07 1.73 5.42 -17.34 -0.09 1.64 16 3 Si 0.92 18.81 29.56 -169.99 -5.03 13.79 16 4 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.46 -12.12 9.02 -37.85 -0.34 -12.46 16 8 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 9 C 0.10 2.67 5.55 -106.80 -0.59 2.07 16 10 C -0.21 -5.14 9.74 -39.26 -0.38 -5.52 16 11 C -0.08 -1.99 8.61 -39.79 -0.34 -2.33 16 12 C 0.00 -0.01 6.31 -83.57 -0.53 -0.53 16 13 N -0.64 -10.87 5.30 -9.74 -0.05 -10.92 16 14 C 0.50 8.51 7.74 -10.99 -0.09 8.43 16 15 O -0.51 -10.93 13.92 -14.11 -0.20 -11.13 16 16 C 0.05 0.69 5.95 36.00 0.21 0.90 16 17 O -0.33 -4.51 9.75 -45.91 -0.45 -4.96 16 18 C 0.46 5.74 8.03 36.01 0.29 6.03 16 19 O -0.49 -7.31 16.25 -25.48 -0.41 -7.73 16 20 C 0.07 0.65 6.38 36.01 0.23 0.88 16 21 O -0.36 -3.64 9.59 -55.18 -0.53 -4.17 16 22 C 0.08 0.59 3.33 -25.07 -0.08 0.50 16 23 C -0.15 -0.96 6.65 -24.55 -0.16 -1.12 16 24 C -0.12 -0.63 6.84 -24.88 -0.17 -0.80 16 25 C -0.12 -0.63 6.80 -25.61 -0.17 -0.80 16 26 C -0.12 -0.79 6.56 -25.61 -0.17 -0.96 16 27 C -0.12 -2.62 9.90 -39.79 -0.39 -3.01 16 28 C -0.14 -3.58 8.62 -39.26 -0.34 -3.91 16 29 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 30 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 31 H 0.11 2.51 6.22 -52.48 -0.33 2.18 16 32 H 0.40 5.05 8.82 -40.82 -0.36 4.69 16 33 H 0.10 1.06 8.13 -51.92 -0.42 0.63 16 34 H 0.10 1.12 8.13 -51.93 -0.42 0.70 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 0.65 8.11 -51.93 -0.42 0.23 16 37 H 0.07 0.41 7.84 -51.92 -0.41 0.00 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 47 H 0.13 3.46 6.13 -52.48 -0.32 3.14 16 LS Contribution 396.57 15.07 5.98 5.98 Total: -1.00 -32.85 396.57 -10.10 -42.95 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.87 Total: 7.46 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -3.12 Total: -10.99 kcal Atomic # 7 Polarization: -31.74 SS G_CDS: 0.54 Total: -31.20 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -1.59 Total: -27.98 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.85 -10.10 -42.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051731432.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.479 kcal (2) G-P(sol) polarization free energy of solvation -32.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds