Wall clock time and date at job start Wed Apr 1 2020 04:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86807 * 119.99848 * 2 1 4 4 H 1.48493 * 109.47039 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47044 * 299.99904 * 3 2 1 6 6 H 1.48503 * 109.46964 * 59.99760 * 3 2 1 7 7 C 1.39899 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99823 * 175.56204 * 7 2 1 9 9 C 1.41158 * 120.00091 * 355.56269 * 7 2 1 10 10 C 1.40874 * 120.16222 * 214.78080 * 9 7 2 11 11 C 1.36364 * 119.82436 * 180.02562 * 10 9 7 12 12 C 1.39486 * 120.17264 * 359.97438 * 11 10 9 13 13 N 1.39237 * 119.83569 * 179.97438 * 12 11 10 14 14 C 1.34782 * 119.99850 * 35.29494 * 13 12 11 15 15 O 1.21285 * 119.99726 * 355.70198 * 14 13 12 16 16 C 1.50696 * 120.00226 * 175.70624 * 14 13 12 17 17 O 1.45195 * 109.47237 * 179.97438 * 16 14 13 18 18 C 1.34231 * 116.99822 * 180.02562 * 17 16 14 19 19 O 1.20828 * 120.00128 * 359.97438 * 18 17 16 20 20 C 1.50701 * 120.00023 * 180.02562 * 18 17 16 21 21 O 1.42905 * 109.47338 * 180.02562 * 20 18 17 22 22 C 1.42897 * 113.99924 * 180.02562 * 21 20 18 23 23 C 1.54886 * 110.48782 * 93.23959 * 22 21 20 24 24 C 1.55246 * 102.58482 * 156.67490 * 23 22 21 25 25 C 1.54265 * 104.23122 * 322.08242 * 24 23 22 26 26 C 1.53875 * 106.59842 * 23.61176 * 25 24 23 27 27 C 1.39480 * 120.33154 * 0.25792 * 12 11 10 28 28 C 1.36381 * 120.16509 * 359.48089 * 27 12 11 29 29 H 0.96999 * 119.99960 * 0.02562 * 1 2 3 30 30 H 1.07993 * 120.08528 * 0.02562 * 10 9 7 31 31 H 1.08006 * 119.91613 * 179.97438 * 11 10 9 32 32 H 0.97004 * 120.00105 * 215.28966 * 13 12 11 33 33 H 1.09008 * 109.47199 * 59.99785 * 16 14 13 34 34 H 1.09005 * 109.47115 * 300.00080 * 16 14 13 35 35 H 1.09000 * 109.47283 * 59.99752 * 20 18 17 36 36 H 1.09003 * 109.47155 * 300.00045 * 20 18 17 37 37 H 1.09008 * 110.43255 * 330.69558 * 22 21 20 38 38 H 1.08999 * 110.75569 * 275.06360 * 23 22 21 39 39 H 1.08998 * 110.75617 * 38.43872 * 23 22 21 40 40 H 1.08992 * 110.46399 * 203.39165 * 24 23 22 41 41 H 1.08996 * 110.57993 * 80.82966 * 24 23 22 42 42 H 1.08996 * 110.03451 * 264.32694 * 25 24 23 43 43 H 1.08999 * 110.06928 * 142.91877 * 25 24 23 44 44 H 1.08992 * 110.03254 * 240.71224 * 26 25 24 45 45 H 1.09004 * 110.07326 * 119.30366 * 26 25 24 46 46 H 1.07992 * 119.91417 * 179.74097 * 27 12 11 47 47 H 1.08007 * 120.08100 * 180.25957 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7027 1.3465 0.0006 5 1 1.8840 2.3965 -1.2125 6 1 1.8839 2.3965 1.2125 7 6 2.0083 -1.2115 0.0005 8 1 3.0859 -1.2129 -0.0718 9 6 1.3058 -2.4322 0.0957 10 6 1.8651 -3.5180 0.7976 11 6 1.1806 -4.6942 0.8847 12 6 -0.0704 -4.8236 0.2816 13 7 -0.7629 -6.0280 0.3745 14 6 -0.6804 -6.7678 1.4981 15 8 0.0574 -6.4245 2.3973 16 6 -1.5049 -8.0215 1.6370 17 8 -1.2401 -8.6346 2.9262 18 6 -1.8998 -9.7691 3.2085 19 8 -2.6732 -10.2341 2.4051 20 6 -1.6766 -10.4621 4.5280 21 8 -2.4853 -11.6386 4.5909 22 6 -2.3484 -12.3735 5.8088 23 6 -3.4273 -11.9359 6.8302 24 6 -3.5299 -13.1718 7.7642 25 6 -3.3847 -14.3783 6.8140 26 6 -2.6334 -13.8708 5.5707 27 6 -0.6285 -3.7545 -0.4192 28 6 0.0417 -2.5703 -0.5104 29 1 -0.4850 0.8400 -0.0004 30 1 2.8334 -3.4191 1.2654 31 1 1.6083 -5.5277 1.4222 32 1 -1.3048 -6.3345 -0.3694 33 1 -1.2416 -8.7195 0.8422 34 1 -2.5631 -7.7704 1.5641 35 1 -1.9482 -9.7900 5.3419 36 1 -0.6262 -10.7383 4.6202 37 1 -1.3505 -12.2367 6.2256 38 1 -3.1005 -11.0560 7.3843 39 1 -4.3781 -11.7486 6.3314 40 1 -4.4988 -13.1933 8.2628 41 1 -2.7242 -13.1652 8.4983 42 1 -4.3689 -14.7502 6.5295 43 1 -2.8127 -15.1695 7.2987 44 1 -3.2531 -13.9963 4.6829 45 1 -1.6964 -14.4149 5.4516 46 1 -1.5957 -3.8635 -0.8871 47 1 -0.3936 -1.7420 -1.0498 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051731432.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:59 Heat of formation + Delta-G solvation = -165.212464 kcal Electronic energy + Delta-G solvation = -28471.250218 eV Core-core repulsion = 24197.113442 eV Total energy + Delta-G solvation = -4274.136776 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.88920 -41.07271 -39.88801 -39.08050 -37.69057 -36.81164 -36.19113 -34.77792 -31.68459 -31.40742 -30.55988 -29.64087 -29.23549 -27.82351 -26.50334 -23.56318 -22.82082 -22.27732 -21.72565 -21.39243 -21.23207 -19.30985 -18.99715 -18.87514 -18.16317 -18.05279 -17.54417 -17.29363 -16.98629 -16.63160 -16.34905 -15.85766 -15.63160 -15.51704 -15.11283 -14.86933 -14.49860 -14.31136 -14.14258 -13.97086 -13.89954 -13.60048 -13.40891 -13.26315 -13.15078 -12.89058 -12.76944 -12.53300 -12.48915 -12.09382 -11.98184 -11.97639 -11.78879 -11.67525 -11.54644 -11.39907 -11.32427 -11.25342 -10.87736 -10.65461 -10.61913 -9.47968 -8.77022 -8.51557 -6.34440 0.72334 0.93950 0.98661 1.12955 1.39939 1.40589 1.54790 1.66049 2.21418 2.25222 2.79016 2.89274 3.50519 3.57871 3.65284 3.68339 3.70357 3.99608 4.01103 4.01995 4.12998 4.15406 4.31450 4.39163 4.51395 4.52398 4.56897 4.64989 4.76838 4.91895 4.94066 5.06699 5.08253 5.12031 5.13754 5.15381 5.21085 5.28116 5.31030 5.40721 5.46092 5.68675 5.87544 5.98968 6.06439 6.12102 6.37421 6.51994 6.62528 6.67498 6.96029 6.97622 7.24618 8.41313 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.030253 B = 0.001447 C = 0.001421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.302522 B =19344.878195 C =19704.984676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.028 3.972 3 Si 0.988 3.012 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.270 1.270 7 C -0.496 4.496 8 H 0.073 0.927 9 C 0.068 3.932 10 C -0.220 4.220 11 C -0.096 4.096 12 C 0.017 3.983 13 N -0.635 5.635 14 C 0.502 3.498 15 O -0.555 6.555 16 C 0.061 3.939 17 O -0.343 6.343 18 C 0.465 3.535 19 O -0.519 6.519 20 C 0.073 3.927 21 O -0.385 6.385 22 C 0.076 3.924 23 C -0.151 4.151 24 C -0.121 4.121 25 C -0.121 4.121 26 C -0.125 4.125 27 C -0.115 4.115 28 C -0.159 4.159 29 H 0.285 0.715 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.422 0.578 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.061 0.939 45 H 0.080 0.920 46 H 0.128 0.872 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.517 -23.671 10.446 26.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.184 1.184 5 H -0.187 1.187 6 H -0.195 1.195 7 C -0.527 4.527 8 H 0.091 0.909 9 C 0.066 3.934 10 C -0.240 4.240 11 C -0.116 4.116 12 C -0.077 4.077 13 N -0.282 5.282 14 C 0.289 3.711 15 O -0.433 6.433 16 C -0.016 4.016 17 O -0.259 6.259 18 C 0.309 3.691 19 O -0.407 6.407 20 C -0.004 4.004 21 O -0.305 6.305 22 C 0.019 3.981 23 C -0.189 4.189 24 C -0.158 4.158 25 C -0.159 4.159 26 C -0.162 4.162 27 C -0.135 4.135 28 C -0.179 4.179 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.127 0.873 32 H 0.260 0.740 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.135 0.865 36 H 0.140 0.860 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.098 0.902 44 H 0.080 0.920 45 H 0.099 0.901 46 H 0.145 0.855 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.577 -23.497 10.677 26.898 hybrid contribution 0.104 0.918 -0.414 1.012 sum -7.473 -22.579 10.263 25.903 Atomic orbital electron populations 1.69824 1.08566 1.29952 1.38474 1.26729 0.95799 1.04287 0.91549 0.85061 0.79094 0.76143 0.78783 1.18385 1.18740 1.19468 1.19767 0.94884 0.91336 1.46700 0.90897 1.18068 0.93385 0.92703 0.89279 1.20930 1.01688 0.95462 1.05970 1.20531 0.93683 0.97489 0.99859 1.17271 0.93525 0.87054 1.09802 1.42648 1.48759 1.19842 1.16962 1.20614 0.83143 0.85371 0.81987 1.90725 1.40040 1.71373 1.41177 1.22724 1.01382 0.92678 0.84818 1.86505 1.63729 1.38058 1.37608 1.23890 0.77029 0.78340 0.89886 1.90685 1.35067 1.64898 1.50027 1.21879 0.98534 0.88751 0.91201 1.87967 1.65607 1.36923 1.39996 1.23396 0.99801 0.91653 0.83232 1.23097 0.99346 0.99245 0.97218 1.22339 1.02875 0.93278 0.97356 1.22091 1.00612 0.98295 0.94874 1.22222 1.01617 0.93173 0.99238 1.20568 0.99371 0.91956 1.01560 1.21181 0.97463 0.96479 1.02810 0.90438 0.88503 0.87278 0.73974 0.85404 0.85740 0.86532 0.86030 0.88914 0.90281 0.91813 0.90859 0.90212 0.91665 0.90193 0.92037 0.90105 0.85459 0.86257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.02 10.59 21.82 0.23 -43.79 16 2 C 0.03 1.44 5.42 85.24 0.46 1.91 16 3 Si 0.99 38.91 29.56 68.60 2.03 40.93 16 4 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 6 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 7 C -0.50 -27.12 9.02 23.39 0.21 -26.91 16 8 H 0.07 3.86 7.85 -2.91 -0.02 3.84 16 9 C 0.07 3.72 5.55 -21.28 -0.12 3.60 16 10 C -0.22 -11.38 9.74 22.48 0.22 -11.16 16 11 C -0.10 -4.55 8.61 22.13 0.19 -4.36 16 12 C 0.02 0.71 6.31 38.57 0.24 0.95 16 13 N -0.64 -19.94 5.30 -303.10 -1.61 -21.55 16 14 C 0.50 16.15 7.74 87.65 0.68 16.83 16 15 O -0.56 -23.43 13.92 15.75 0.22 -23.21 16 16 C 0.06 1.39 5.95 71.23 0.42 1.81 16 17 O -0.34 -8.75 9.75 -45.07 -0.44 -9.19 16 18 C 0.47 10.71 8.03 71.24 0.57 11.29 16 19 O -0.52 -14.73 16.25 28.39 0.46 -14.27 16 20 C 0.07 1.16 6.38 71.24 0.45 1.61 16 21 O -0.39 -7.30 9.59 -129.90 -1.25 -8.55 16 22 C 0.08 0.96 3.33 31.67 0.11 1.06 16 23 C -0.15 -1.72 6.65 32.01 0.21 -1.51 16 24 C -0.12 -1.01 6.84 31.79 0.22 -0.79 16 25 C -0.12 -1.06 6.80 31.32 0.21 -0.85 16 26 C -0.12 -1.47 6.56 31.32 0.21 -1.27 16 27 C -0.11 -5.00 9.90 22.14 0.22 -4.78 16 28 C -0.16 -8.19 8.62 22.48 0.19 -8.00 16 29 H 0.28 13.51 8.30 -92.71 -0.77 12.74 16 30 H 0.10 4.81 8.06 -2.91 -0.02 4.79 16 31 H 0.11 5.12 6.22 -2.91 -0.02 5.10 16 32 H 0.42 9.28 8.82 -92.71 -0.82 8.46 16 33 H 0.13 2.27 8.13 -2.38 -0.02 2.25 16 34 H 0.12 2.34 8.13 -2.38 -0.02 2.32 16 35 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.12 1.31 8.11 -2.39 -0.02 1.29 16 37 H 0.09 0.79 7.84 -2.38 -0.02 0.77 16 38 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.06 0.94 8.07 -2.39 -0.02 0.92 16 45 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 46 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 47 H 0.12 6.40 6.13 -2.91 -0.02 6.38 16 Total: -1.00 -73.48 396.57 4.53 -68.95 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: 0.18 Total: 31.21 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: 4.70 Total: -20.55 kcal Atomic # 7 Polarization: -63.96 SS G_CDS: -1.38 Total: -65.33 kcal Atomic # 8 Polarization: -54.21 SS G_CDS: -1.00 Total: -55.21 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.93 kcal Total: -73.48 4.53 -68.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051731432.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.261 kcal (2) G-P(sol) polarization free energy of solvation -73.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds