Wall clock time and date at job start Wed Apr 1 2020 04:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00053 * 2 1 4 4 H 1.48500 * 109.47443 * 269.99910 * 3 2 1 5 5 H 1.48495 * 109.47300 * 30.00383 * 3 2 1 6 6 H 1.48499 * 109.47165 * 150.00127 * 3 2 1 7 7 C 1.37882 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00003 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99422 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.46518 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99713 * 90.00246 * 10 9 7 12 12 O 1.21292 * 119.99517 * 175.26661 * 11 10 9 13 13 C 1.50703 * 120.00201 * 355.26557 * 11 10 9 14 14 O 1.45203 * 109.46983 * 180.02562 * 13 11 10 15 15 C 1.34228 * 116.99614 * 179.97438 * 14 13 11 16 16 O 1.20820 * 120.00176 * 359.97438 * 15 14 13 17 17 C 1.50695 * 119.99762 * 179.97438 * 15 14 13 18 18 C 1.52995 * 109.47336 * 179.97438 * 17 15 14 19 19 H 1.09002 * 109.82794 * 305.57154 * 18 17 15 20 20 C 1.54380 * 109.83695 * 184.58874 * 18 17 15 21 21 C 1.55303 * 102.25738 * 219.13428 * 20 18 17 22 22 C 1.54951 * 100.94201 * 34.12728 * 21 20 18 23 23 O 1.43235 * 109.83193 * 66.45438 * 18 17 15 24 24 C 1.39925 * 120.00166 * 269.72426 * 10 9 7 25 25 C 1.38865 * 120.06999 * 111.87297 * 24 10 9 26 26 C 1.38115 * 119.92557 * 179.76652 * 25 24 10 27 27 C 1.38278 * 120.07163 * 0.48532 * 26 25 24 28 28 C 1.38282 * 120.14369 * 359.77156 * 27 26 25 29 29 C 1.38117 * 120.06676 * 359.97438 * 28 27 26 30 30 H 0.96999 * 120.00279 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47257 * 60.00233 * 9 7 2 32 32 H 1.08994 * 109.47325 * 299.99284 * 9 7 2 33 33 H 1.09002 * 109.46646 * 300.00177 * 13 11 10 34 34 H 1.08989 * 109.46949 * 59.99779 * 13 11 10 35 35 H 1.08994 * 109.47486 * 300.00312 * 17 15 14 36 36 H 1.09006 * 109.47238 * 60.00173 * 17 15 14 37 37 H 1.09000 * 110.84408 * 337.32453 * 20 18 17 38 38 H 1.09005 * 110.84728 * 100.93969 * 20 18 17 39 39 H 1.09005 * 111.12453 * 276.21268 * 21 20 18 40 40 H 1.08992 * 111.16282 * 152.06714 * 21 20 18 41 41 H 1.08997 * 110.31048 * 204.64240 * 22 21 20 42 42 H 1.08995 * 110.38615 * 82.51731 * 22 21 20 43 43 H 1.07994 * 120.04037 * 359.97438 * 25 24 10 44 44 H 1.07998 * 119.96501 * 180.21310 * 26 25 24 45 45 H 1.08006 * 119.93222 * 179.74210 * 27 26 25 46 46 H 1.07999 * 119.96874 * 179.97438 * 28 27 26 47 47 H 1.08000 * 120.03237 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 4.2240 -3.2109 -1.1682 12 8 4.7089 -4.3226 -1.1699 13 6 3.8721 -2.5403 -2.4711 14 8 4.2060 -3.4223 -3.5751 15 6 3.9522 -2.9713 -4.8136 16 8 3.4668 -1.8760 -4.9700 17 6 4.2729 -3.8311 -6.0090 18 6 3.8887 -3.0876 -7.2897 19 1 2.8448 -2.7782 -7.2387 20 6 4.1060 -4.0042 -8.5128 21 6 4.6766 -3.0171 -9.5674 22 6 5.4957 -2.0619 -8.6632 23 8 4.7282 -1.9389 -7.4552 24 6 4.2390 -3.2328 1.2108 25 6 3.4345 -4.2974 1.5954 26 6 3.6763 -4.9473 2.7899 27 6 4.7117 -4.5325 3.6072 28 6 5.5112 -3.4693 3.2296 29 6 5.2780 -2.8186 2.0339 30 1 -0.4850 0.8400 0.0004 31 1 3.8752 -0.6805 0.8888 32 1 3.8745 -0.6801 -0.8911 33 1 2.8043 -2.3223 -2.4907 34 1 4.4343 -1.6113 -2.5649 35 1 5.3403 -4.0512 -6.0224 36 1 3.7106 -4.7629 -5.9477 37 1 4.8275 -4.7891 -8.2859 38 1 3.1613 -4.4300 -8.8511 39 1 3.8759 -2.4832 -10.0793 40 1 5.3206 -3.5319 -10.2802 41 1 5.6057 -1.0890 -9.1423 42 1 6.4747 -2.4896 -8.4476 43 1 2.6229 -4.6189 0.9597 44 1 3.0532 -5.7775 3.0880 45 1 4.8961 -5.0397 4.5427 46 1 6.3189 -3.1475 3.8703 47 1 5.9031 -1.9885 1.7393 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058928786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:28 Heat of formation + Delta-G solvation = -130.331014 kcal Electronic energy + Delta-G solvation = -30266.757488 eV Core-core repulsion = 25994.133285 eV Total energy + Delta-G solvation = -4272.624203 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.56866 -39.95441 -39.28316 -37.96464 -36.08355 -35.19770 -32.69078 -32.63915 -31.98088 -30.58847 -30.34775 -28.47661 -27.62207 -26.69896 -22.95084 -22.74993 -22.18105 -21.94426 -21.63886 -20.33428 -19.12333 -17.67657 -17.29127 -17.15096 -16.82860 -16.49574 -16.25139 -16.10150 -15.75654 -15.41630 -15.05326 -14.58373 -14.25735 -14.09516 -14.06811 -13.60341 -13.52862 -13.14128 -13.07368 -12.66042 -12.59999 -12.28569 -12.23946 -12.05612 -11.97441 -11.88786 -11.56670 -11.44066 -11.41568 -11.15483 -11.14793 -10.82336 -10.77860 -10.39781 -10.35068 -10.25123 -9.72650 -9.72157 -9.37582 -8.77537 -8.71041 -8.57746 -7.81041 -6.26229 -4.29899 1.64697 1.76331 2.45170 2.57145 3.02351 3.18198 3.23678 3.26815 3.57282 3.73450 4.13220 4.15393 4.23772 4.40056 4.57803 4.77376 4.90655 4.93055 5.00970 5.05330 5.14165 5.24095 5.27101 5.27269 5.34484 5.39554 5.41122 5.45269 5.50256 5.55541 5.68063 5.73972 5.79168 5.89595 5.89975 5.92239 6.31018 6.37606 6.48719 6.65594 6.68835 6.81707 6.87412 6.90271 7.05373 7.33572 7.47023 7.81379 7.99172 8.27940 8.63599 8.77964 9.31307 10.85983 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010066 B = 0.002965 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2781.053381 B = 9442.797753 C =11381.026168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.082 3.918 3 Si 0.868 3.132 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.548 4.548 8 H 0.081 0.919 9 C 0.206 3.794 10 N -0.552 5.552 11 C 0.527 3.473 12 O -0.534 6.534 13 C 0.055 3.945 14 O -0.341 6.341 15 C 0.458 3.542 16 O -0.490 6.490 17 C -0.123 4.123 18 C 0.091 3.909 19 H 0.093 0.907 20 C -0.151 4.151 21 C -0.156 4.156 22 C 0.045 3.955 23 O -0.363 6.363 24 C 0.172 3.828 25 C -0.100 4.100 26 C -0.112 4.112 27 C -0.132 4.132 28 C -0.115 4.115 29 C -0.125 4.125 30 H 0.268 0.732 31 H 0.042 0.958 32 H 0.034 0.966 33 H 0.120 0.880 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.118 0.882 46 H 0.121 0.879 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.662 -7.946 -10.767 17.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.123 4.123 3 Si 0.694 3.306 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.586 4.586 8 H 0.099 0.901 9 C 0.086 3.914 10 N -0.281 5.281 11 C 0.315 3.685 12 O -0.411 6.411 13 C -0.021 4.021 14 O -0.257 6.257 15 C 0.299 3.701 16 O -0.376 6.376 17 C -0.161 4.161 18 C 0.033 3.967 19 H 0.110 0.890 20 C -0.188 4.188 21 C -0.193 4.193 22 C -0.032 4.032 23 O -0.282 6.282 24 C 0.081 3.919 25 C -0.120 4.120 26 C -0.131 4.131 27 C -0.150 4.150 28 C -0.133 4.133 29 C -0.144 4.144 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.138 0.862 34 H 0.116 0.884 35 H 0.127 0.873 36 H 0.134 0.866 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.077 0.923 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.136 0.864 46 H 0.139 0.861 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.592 -7.857 -10.677 16.968 hybrid contribution 0.099 1.084 -0.013 1.088 sum 10.691 -6.773 -10.690 16.566 Atomic orbital electron populations 1.69871 1.06215 1.27410 1.48656 1.24829 0.94752 0.98883 0.93843 0.86968 0.80495 0.83948 0.79209 1.19459 1.20624 1.18814 1.21266 0.88507 0.95297 1.53562 0.90126 1.20044 0.96563 0.76552 0.98230 1.45450 1.64074 1.16073 1.02493 1.19931 0.78114 0.85777 0.84681 1.90681 1.43557 1.19496 1.87338 1.22782 1.04693 0.92039 0.82589 1.86456 1.77065 1.47367 1.14812 1.23495 0.75645 0.86654 0.84273 1.90735 1.39437 1.21143 1.86280 1.21841 1.05371 0.98996 0.89849 1.22597 0.96174 0.85793 0.92139 0.88962 1.23191 1.02779 0.98448 0.94421 1.23266 1.00412 0.97446 0.98225 1.23423 0.94656 1.00005 0.85120 1.88630 1.56786 1.40811 1.41957 1.17494 0.94033 0.93647 0.86684 1.21272 0.98323 0.95889 0.96498 1.20970 0.97990 0.99810 0.94312 1.21048 0.96453 0.97773 0.99704 1.20896 0.99834 0.96415 0.96182 1.21184 0.96932 1.00943 0.95368 0.92172 0.94017 0.94855 0.86208 0.88391 0.87325 0.86594 0.89978 0.89488 0.90207 0.89867 0.89740 0.92291 0.85981 0.86078 0.86366 0.86137 0.86099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.79 13.96 55.43 0.77 -25.02 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.87 20.06 27.47 -169.99 -4.67 15.39 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 7 C -0.55 -14.48 9.71 -34.44 -0.33 -14.82 16 8 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 9 C 0.21 4.61 3.95 -5.19 -0.02 4.59 16 10 N -0.55 -11.72 2.50 -114.73 -0.29 -12.01 16 11 C 0.53 11.19 7.61 -10.98 -0.08 11.11 16 12 O -0.53 -12.27 16.27 -14.11 -0.23 -12.50 16 13 C 0.06 1.09 4.61 36.01 0.17 1.25 16 14 O -0.34 -6.25 9.76 -45.90 -0.45 -6.69 16 15 C 0.46 7.52 7.85 36.00 0.28 7.81 16 16 O -0.49 -9.60 15.24 -23.58 -0.36 -9.96 16 17 C -0.12 -1.36 5.38 -27.89 -0.15 -1.51 16 18 C 0.09 0.98 3.04 -26.01 -0.08 0.90 16 19 H 0.09 1.09 7.95 -51.93 -0.41 0.68 16 20 C -0.15 -1.05 6.54 -24.79 -0.16 -1.21 16 21 C -0.16 -1.03 7.16 -24.48 -0.18 -1.21 16 22 C 0.04 0.40 7.78 38.19 0.30 0.69 16 23 O -0.36 -4.80 10.36 -47.69 -0.49 -5.29 16 24 C 0.17 3.45 4.74 -83.70 -0.40 3.05 16 25 C -0.10 -1.91 9.57 -39.39 -0.38 -2.29 16 26 C -0.11 -1.76 10.04 -39.61 -0.40 -2.16 16 27 C -0.13 -1.86 10.04 -39.55 -0.40 -2.26 16 28 C -0.11 -1.68 10.04 -39.61 -0.40 -2.08 16 29 C -0.12 -2.16 9.69 -39.39 -0.38 -2.54 16 30 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 31 H 0.04 0.93 6.91 -51.93 -0.36 0.57 16 32 H 0.03 0.71 5.90 -51.93 -0.31 0.41 16 33 H 0.12 2.51 7.91 -51.93 -0.41 2.10 16 34 H 0.10 1.81 7.25 -51.94 -0.38 1.44 16 35 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.12 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.08 0.47 7.85 -51.93 -0.41 0.06 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.12 2.41 8.06 -52.49 -0.42 1.98 16 44 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 45 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 46 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 47 H 0.12 1.93 8.06 -52.49 -0.42 1.50 16 LS Contribution 396.95 15.07 5.98 5.98 Total: -1.00 -34.24 396.95 -9.37 -43.61 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -6.94 Total: 5.02 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -2.70 Total: 1.47 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.49 Total: -37.03 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -1.53 Total: -34.45 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.67 Total: 15.39 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.24 -9.37 -43.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058928786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.716 kcal (2) G-P(sol) polarization free energy of solvation -34.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds