Wall clock time and date at job start Wed Apr 1 2020 04:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00053 * 2 1 4 4 H 1.48500 * 109.47443 * 269.99910 * 3 2 1 5 5 H 1.48495 * 109.47300 * 30.00383 * 3 2 1 6 6 H 1.48499 * 109.47165 * 150.00127 * 3 2 1 7 7 C 1.37882 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00003 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99422 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.46518 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99713 * 90.00246 * 10 9 7 12 12 O 1.21292 * 119.99517 * 175.26661 * 11 10 9 13 13 C 1.50703 * 120.00201 * 355.26557 * 11 10 9 14 14 O 1.45203 * 109.46983 * 180.02562 * 13 11 10 15 15 C 1.34228 * 116.99614 * 179.97438 * 14 13 11 16 16 O 1.20820 * 120.00176 * 359.97438 * 15 14 13 17 17 C 1.50695 * 119.99762 * 179.97438 * 15 14 13 18 18 C 1.52995 * 109.47336 * 179.97438 * 17 15 14 19 19 H 1.09002 * 109.82794 * 305.57154 * 18 17 15 20 20 C 1.54380 * 109.83695 * 184.58874 * 18 17 15 21 21 C 1.55303 * 102.25738 * 219.13428 * 20 18 17 22 22 C 1.54951 * 100.94201 * 34.12728 * 21 20 18 23 23 O 1.43235 * 109.83193 * 66.45438 * 18 17 15 24 24 C 1.39925 * 120.00166 * 269.72426 * 10 9 7 25 25 C 1.38865 * 120.06999 * 111.87297 * 24 10 9 26 26 C 1.38115 * 119.92557 * 179.76652 * 25 24 10 27 27 C 1.38278 * 120.07163 * 0.48532 * 26 25 24 28 28 C 1.38282 * 120.14369 * 359.77156 * 27 26 25 29 29 C 1.38117 * 120.06676 * 359.97438 * 28 27 26 30 30 H 0.96999 * 120.00279 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47257 * 60.00233 * 9 7 2 32 32 H 1.08994 * 109.47325 * 299.99284 * 9 7 2 33 33 H 1.09002 * 109.46646 * 300.00177 * 13 11 10 34 34 H 1.08989 * 109.46949 * 59.99779 * 13 11 10 35 35 H 1.08994 * 109.47486 * 300.00312 * 17 15 14 36 36 H 1.09006 * 109.47238 * 60.00173 * 17 15 14 37 37 H 1.09000 * 110.84408 * 337.32453 * 20 18 17 38 38 H 1.09005 * 110.84728 * 100.93969 * 20 18 17 39 39 H 1.09005 * 111.12453 * 276.21268 * 21 20 18 40 40 H 1.08992 * 111.16282 * 152.06714 * 21 20 18 41 41 H 1.08997 * 110.31048 * 204.64240 * 22 21 20 42 42 H 1.08995 * 110.38615 * 82.51731 * 22 21 20 43 43 H 1.07994 * 120.04037 * 359.97438 * 25 24 10 44 44 H 1.07998 * 119.96501 * 180.21310 * 26 25 24 45 45 H 1.08006 * 119.93222 * 179.74210 * 27 26 25 46 46 H 1.07999 * 119.96874 * 179.97438 * 28 27 26 47 47 H 1.08000 * 120.03237 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 4.2240 -3.2109 -1.1682 12 8 4.7089 -4.3226 -1.1699 13 6 3.8721 -2.5403 -2.4711 14 8 4.2060 -3.4223 -3.5751 15 6 3.9522 -2.9713 -4.8136 16 8 3.4668 -1.8760 -4.9700 17 6 4.2729 -3.8311 -6.0090 18 6 3.8887 -3.0876 -7.2897 19 1 2.8448 -2.7782 -7.2387 20 6 4.1060 -4.0042 -8.5128 21 6 4.6766 -3.0171 -9.5674 22 6 5.4957 -2.0619 -8.6632 23 8 4.7282 -1.9389 -7.4552 24 6 4.2390 -3.2328 1.2108 25 6 3.4345 -4.2974 1.5954 26 6 3.6763 -4.9473 2.7899 27 6 4.7117 -4.5325 3.6072 28 6 5.5112 -3.4693 3.2296 29 6 5.2780 -2.8186 2.0339 30 1 -0.4850 0.8400 0.0004 31 1 3.8752 -0.6805 0.8888 32 1 3.8745 -0.6801 -0.8911 33 1 2.8043 -2.3223 -2.4907 34 1 4.4343 -1.6113 -2.5649 35 1 5.3403 -4.0512 -6.0224 36 1 3.7106 -4.7629 -5.9477 37 1 4.8275 -4.7891 -8.2859 38 1 3.1613 -4.4300 -8.8511 39 1 3.8759 -2.4832 -10.0793 40 1 5.3206 -3.5319 -10.2802 41 1 5.6057 -1.0890 -9.1423 42 1 6.4747 -2.4896 -8.4476 43 1 2.6229 -4.6189 0.9597 44 1 3.0532 -5.7775 3.0880 45 1 4.8961 -5.0397 4.5427 46 1 6.3189 -3.1475 3.8703 47 1 5.9031 -1.9885 1.7393 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058928786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:27 Heat of formation + Delta-G solvation = -149.973998 kcal Electronic energy + Delta-G solvation = -30267.609271 eV Core-core repulsion = 25994.133285 eV Total energy + Delta-G solvation = -4273.475986 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.97222 -41.33495 -40.24540 -39.37244 -37.53561 -36.90557 -34.67275 -33.54698 -32.73416 -31.87011 -31.80058 -30.15677 -29.14813 -27.69075 -24.76949 -23.99154 -23.38088 -23.09203 -22.44845 -21.44338 -20.66029 -19.21876 -19.02677 -18.33855 -18.20899 -18.03457 -17.59282 -17.20633 -16.83461 -16.78984 -16.53607 -16.03562 -15.61464 -15.42031 -15.21745 -14.87339 -14.58574 -14.44309 -14.33400 -14.19588 -13.98515 -13.90447 -13.58969 -13.48045 -13.17230 -12.96968 -12.63449 -12.62462 -12.48654 -12.31244 -12.25488 -12.05406 -12.01066 -11.94813 -11.77902 -11.73275 -11.58555 -11.08036 -10.85371 -10.54283 -10.24133 -9.85829 -9.33772 -8.37668 -6.46642 0.32675 0.48121 1.13104 1.16969 1.34306 1.36183 1.36580 1.44779 2.19610 2.27792 2.83036 2.90146 2.96336 3.36507 3.49109 3.63914 3.70653 3.88357 3.98315 4.01642 4.07895 4.11590 4.18060 4.23234 4.26182 4.38536 4.43951 4.52605 4.55092 4.56895 4.67457 4.69660 4.78240 4.83250 4.93587 4.97153 5.06131 5.10064 5.25831 5.29271 5.30551 5.42029 5.53009 5.57571 5.67890 5.98668 6.12627 6.13475 6.28994 6.57450 6.63183 6.97287 7.19028 8.78392 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010066 B = 0.002965 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2781.053381 B = 9442.797753 C =11381.026168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.024 3.976 3 Si 0.935 3.065 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.234 1.234 7 C -0.547 4.547 8 H 0.033 0.967 9 C 0.214 3.786 10 N -0.551 5.551 11 C 0.525 3.475 12 O -0.555 6.555 13 C 0.061 3.939 14 O -0.347 6.347 15 C 0.453 3.547 16 O -0.528 6.528 17 C -0.115 4.115 18 C 0.084 3.916 19 H 0.070 0.930 20 C -0.141 4.141 21 C -0.149 4.149 22 C 0.034 3.966 23 O -0.404 6.404 24 C 0.128 3.872 25 C -0.133 4.133 26 C -0.114 4.114 27 C -0.120 4.120 28 C -0.106 4.106 29 C -0.136 4.136 30 H 0.270 0.730 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.130 0.870 36 H 0.147 0.853 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.094 0.906 44 H 0.146 0.854 45 H 0.162 0.838 46 H 0.162 0.838 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.629 -8.467 -10.273 19.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.175 4.175 3 Si 0.757 3.243 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.157 1.157 7 C -0.585 4.585 8 H 0.051 0.949 9 C 0.094 3.906 10 N -0.279 5.279 11 C 0.313 3.687 12 O -0.434 6.434 13 C -0.015 4.015 14 O -0.263 6.263 15 C 0.297 3.703 16 O -0.416 6.416 17 C -0.152 4.152 18 C 0.026 3.974 19 H 0.088 0.912 20 C -0.178 4.178 21 C -0.186 4.186 22 C -0.042 4.042 23 O -0.324 6.324 24 C 0.038 3.962 25 C -0.153 4.153 26 C -0.132 4.132 27 C -0.138 4.138 28 C -0.124 4.124 29 C -0.155 4.155 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.116 0.884 34 H 0.127 0.873 35 H 0.148 0.852 36 H 0.164 0.836 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.096 0.904 40 H 0.127 0.873 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.112 0.888 44 H 0.164 0.836 45 H 0.180 0.820 46 H 0.179 0.821 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 13.581 -8.405 -10.177 18.938 hybrid contribution -0.858 1.128 -0.116 1.421 sum 12.724 -7.278 -10.292 17.910 Atomic orbital electron populations 1.70026 1.08296 1.28555 1.50602 1.25743 0.95513 1.02973 0.93321 0.85901 0.80212 0.78601 0.79622 1.19073 1.20406 1.15712 1.21387 0.90749 0.93527 1.52865 0.94896 1.19869 0.93695 0.77812 0.99231 1.45407 1.63530 1.15645 1.03298 1.20157 0.77746 0.85569 0.85187 1.90641 1.44801 1.20263 1.87666 1.22568 1.03380 0.92729 0.82870 1.86501 1.77202 1.47281 1.15321 1.24723 0.74249 0.86871 0.84495 1.90713 1.41280 1.23095 1.86493 1.22102 1.07089 0.98978 0.87031 1.22704 0.94834 0.86227 0.93637 0.91161 1.23196 1.04226 0.98081 0.92296 1.23265 1.00364 0.96883 0.98105 1.23660 0.95124 1.01004 0.84451 1.88590 1.57553 1.42294 1.43939 1.17921 0.96207 0.95032 0.87047 1.21306 0.98520 0.97261 0.98179 1.21314 0.98864 0.99995 0.93049 1.21572 0.94647 0.97043 1.00495 1.21407 1.00299 0.95485 0.95210 1.21434 0.96328 1.01698 0.96060 0.92055 0.92743 0.93314 0.88421 0.87321 0.85178 0.83570 0.87944 0.87972 0.90429 0.87311 0.89663 0.91162 0.88793 0.83635 0.82026 0.82055 0.84980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.95 13.96 21.45 0.30 -56.65 16 2 C 0.02 1.36 5.47 84.66 0.46 1.83 16 3 Si 0.93 41.38 27.47 68.60 1.88 43.26 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 6 H -0.23 -9.20 6.54 99.48 0.65 -8.55 16 7 C -0.55 -30.28 9.71 25.60 0.25 -30.03 16 8 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 9 C 0.21 9.73 3.95 85.63 0.34 10.07 16 10 N -0.55 -24.18 2.50 -635.29 -1.59 -25.77 16 11 C 0.52 23.28 7.61 87.66 0.67 23.95 16 12 O -0.56 -26.46 16.27 15.73 0.26 -26.20 16 13 C 0.06 2.53 4.61 71.24 0.33 2.86 16 14 O -0.35 -13.13 9.76 -45.04 -0.44 -13.57 16 15 C 0.45 15.28 7.85 71.23 0.56 15.84 16 16 O -0.53 -21.67 15.24 26.61 0.41 -21.27 16 17 C -0.11 -2.44 5.38 29.84 0.16 -2.28 16 18 C 0.08 1.77 3.04 31.06 0.09 1.87 16 19 H 0.07 1.74 7.95 -2.39 -0.02 1.72 16 20 C -0.14 -1.61 6.54 31.85 0.21 -1.40 16 21 C -0.15 -1.64 7.16 32.05 0.23 -1.41 16 22 C 0.03 0.56 7.78 72.65 0.57 1.13 16 23 O -0.40 -10.74 10.36 -137.07 -1.42 -12.16 16 24 C 0.13 5.21 4.74 38.15 0.18 5.39 16 25 C -0.13 -5.27 9.57 22.39 0.21 -5.05 16 26 C -0.11 -3.44 10.04 22.25 0.22 -3.21 16 27 C -0.12 -2.94 10.04 22.29 0.22 -2.72 16 28 C -0.11 -2.71 10.04 22.25 0.22 -2.49 16 29 C -0.14 -4.49 9.69 22.39 0.22 -4.28 16 30 H 0.27 15.35 8.31 -92.71 -0.77 14.57 16 31 H 0.05 2.35 6.91 -2.39 -0.02 2.34 16 32 H 0.05 2.07 5.90 -2.39 -0.01 2.06 16 33 H 0.10 4.44 7.91 -2.39 -0.02 4.42 16 34 H 0.11 4.16 7.25 -2.39 -0.02 4.15 16 35 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.15 2.21 8.14 -2.38 -0.02 2.19 16 37 H 0.10 0.79 7.85 -2.39 -0.02 0.77 16 38 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.09 4.09 8.06 -2.91 -0.02 4.06 16 44 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 45 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 46 H 0.16 2.82 8.06 -2.91 -0.02 2.79 16 47 H 0.13 3.95 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -80.63 396.95 5.45 -75.17 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.91 Total: 27.12 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 5.15 Total: 10.07 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -1.29 Total: -82.42 kcal Atomic # 8 Polarization: -72.00 SS G_CDS: -1.20 Total: -73.20 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 1.88 Total: 43.26 kcal Total: -80.63 5.45 -75.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058928786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.799 kcal (2) G-P(sol) polarization free energy of solvation -80.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds