Wall clock time and date at job start Wed Apr 1 2020 04:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00232 * 2 1 4 4 C 1.52999 * 109.47229 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46975 * 65.00279 * 4 3 2 6 6 C 1.46501 * 120.00223 * 269.66820 * 5 4 3 7 7 C 1.50706 * 109.47192 * 274.63357 * 6 5 4 8 8 H 1.08001 * 119.99556 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00135 * 179.97438 * 7 6 5 10 10 N 1.31520 * 120.00197 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99893 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47471 * 60.00263 * 11 9 7 13 13 H 1.48510 * 109.47074 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47526 * 300.00062 * 11 9 7 15 15 C 1.34778 * 120.00312 * 89.66447 * 5 4 3 16 16 O 1.21603 * 120.00474 * 184.06977 * 15 5 4 17 17 C 1.47410 * 119.99429 * 4.07897 * 15 5 4 18 18 C 1.41319 * 126.41424 * 340.70033 * 17 15 5 19 19 N 1.30481 * 108.06524 * 179.70248 * 18 17 15 20 20 N 1.39929 * 108.91585 * 0.44449 * 19 18 17 21 21 C 1.40223 * 125.76966 * 179.80602 * 20 19 18 22 22 C 1.38811 * 120.07382 * 179.41840 * 21 20 19 23 23 C 1.38131 * 119.95178 * 180.25836 * 22 21 20 24 24 C 1.38291 * 120.11480 * 0.04140 * 23 22 21 25 25 C 1.38243 * 120.15656 * 359.96270 * 24 23 22 26 26 C 1.38337 * 120.04276 * 0.02562 * 25 24 23 27 27 F 1.35096 * 120.05728 * 179.97438 * 26 25 24 28 28 C 1.34514 * 108.46034 * 359.55217 * 20 19 18 29 29 H 1.08998 * 109.46918 * 299.99646 * 1 2 3 30 30 H 1.08999 * 109.46942 * 59.99402 * 1 2 3 31 31 H 1.08997 * 109.47141 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46680 * 60.00580 * 3 2 1 33 33 H 1.08998 * 109.47237 * 300.00600 * 3 2 1 34 34 H 1.08999 * 109.47192 * 305.00667 * 4 3 2 35 35 H 1.08996 * 109.47066 * 185.00376 * 4 3 2 36 36 H 1.09004 * 109.47261 * 34.63338 * 6 5 4 37 37 H 1.08995 * 109.47664 * 154.63315 * 6 5 4 38 38 H 0.96996 * 120.00231 * 179.97438 * 10 9 7 39 39 H 1.08003 * 125.96334 * 0.02999 * 18 17 15 40 40 H 1.07995 * 120.02269 * 0.27896 * 22 21 20 41 41 H 1.07999 * 119.93810 * 180.02562 * 23 22 21 42 42 H 1.08002 * 119.91968 * 179.97438 * 24 23 22 43 43 H 1.08007 * 119.97543 * 180.02562 * 25 24 23 44 44 H 1.08004 * 126.30997 * 180.26488 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1132 -0.8920 -1.3382 7 6 5.4736 -1.3002 -0.8340 8 1 6.1671 -0.5499 -0.4839 9 6 5.8326 -2.6312 -0.8196 10 7 4.9882 -3.5448 -1.2463 11 14 7.5190 -3.1370 -0.1952 12 1 7.6724 -2.7087 1.2184 13 1 7.6574 -4.6130 -0.2836 14 1 8.5680 -2.4914 -1.0246 15 6 4.2569 1.3324 -2.3221 16 8 4.5514 0.8141 -3.3820 17 6 4.2065 2.8013 -2.2087 18 6 3.5363 3.5431 -1.2099 19 7 3.7310 4.8111 -1.4484 20 7 4.5150 4.9408 -2.6002 21 6 4.9321 6.1494 -3.1760 22 6 5.7212 6.1401 -4.3179 23 6 6.1351 7.3321 -4.8799 24 6 5.7654 8.5350 -4.3064 25 6 4.9797 8.5496 -3.1690 26 6 4.5614 7.3597 -2.6009 27 9 3.7940 7.3736 -1.4891 28 6 4.8056 3.7100 -3.0585 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6887 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.8508 0.5684 0.8426 35 1 3.9785 2.1764 0.0903 36 1 3.3430 -1.3664 -0.7300 37 1 4.0013 -1.2060 -2.3759 38 1 5.2410 -4.4812 -1.2365 39 1 2.9672 3.1321 -0.3892 40 1 6.0110 5.2016 -4.7668 41 1 6.7486 7.3246 -5.7687 42 1 6.0911 9.4651 -4.7482 43 1 4.6924 9.4907 -2.7237 44 1 5.3984 3.4756 -3.9303 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103215440.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:44 Heat of formation + Delta-G solvation = 17.875205 kcal Electronic energy + Delta-G solvation = -30195.833907 eV Core-core repulsion = 25838.468854 eV Total energy + Delta-G solvation = -4357.365053 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.03526 -41.78378 -39.44016 -38.62031 -37.43386 -34.97285 -33.94643 -32.60119 -31.21893 -30.36863 -30.02729 -29.17161 -27.07570 -26.02334 -24.50468 -23.45293 -22.83953 -22.72228 -21.25147 -20.94323 -19.22026 -18.13351 -17.42158 -16.90198 -16.41800 -16.29901 -16.16237 -16.02050 -15.44580 -15.31725 -15.09347 -14.99228 -14.83752 -14.60400 -14.26947 -14.08008 -13.70219 -13.52355 -13.04536 -12.85354 -12.74652 -12.43523 -12.17779 -11.92729 -11.75187 -11.72371 -11.42409 -11.20169 -11.02801 -10.91602 -10.85012 -10.59362 -10.31608 -10.08157 -9.55953 -9.41857 -9.39109 -9.17607 -8.99719 -8.33057 -8.29190 -7.57180 -5.94123 -3.98621 0.32387 0.66680 1.80453 2.02291 2.25178 3.15354 3.37329 3.41314 3.43786 3.66198 3.80690 4.01181 4.04646 4.15935 4.32763 4.51627 4.54898 4.63402 4.73791 4.81756 5.01734 5.18779 5.23805 5.29372 5.39329 5.42591 5.48379 5.51160 5.55870 5.58222 5.59307 5.62888 5.67363 5.74618 5.87367 5.89427 6.17956 6.27773 6.33307 6.81242 7.30481 7.39431 7.42808 7.60537 7.66987 8.03736 8.35011 8.51073 8.97934 9.14839 9.65200 11.13757 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.012108 B = 0.002947 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.918802 B = 9500.047006 C =11038.305697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.034 3.966 4 C 0.092 3.908 5 N -0.578 5.578 6 C 0.248 3.752 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.062 3.938 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.278 1.278 15 C 0.579 3.421 16 O -0.546 6.546 17 C -0.255 4.255 18 C 0.063 3.937 19 N -0.283 5.283 20 N -0.321 5.321 21 C 0.128 3.872 22 C -0.114 4.114 23 C -0.102 4.102 24 C -0.102 4.102 25 C -0.135 4.135 26 C 0.102 3.898 27 F -0.115 7.115 28 C 0.112 3.888 29 H 0.035 0.965 30 H 0.036 0.964 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.047 0.953 37 H 0.044 0.956 38 H 0.262 0.738 39 H 0.211 0.789 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.144 0.856 44 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.393 24.082 -2.720 24.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.044 4.044 4 C -0.033 4.033 5 N -0.307 5.307 6 C 0.130 3.870 7 C -0.567 4.567 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.724 3.276 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.203 1.203 15 C 0.366 3.634 16 O -0.425 6.425 17 C -0.269 4.269 18 C -0.124 4.124 19 N -0.100 5.100 20 N -0.094 5.094 21 C 0.034 3.966 22 C -0.135 4.135 23 C -0.121 4.121 24 C -0.121 4.121 25 C -0.154 4.154 26 C 0.080 3.920 27 F -0.093 7.093 28 C -0.033 4.033 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.227 0.773 40 H 0.161 0.839 41 H 0.159 0.841 42 H 0.156 0.844 43 H 0.162 0.838 44 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -3.408 24.607 -2.877 25.008 hybrid contribution 0.695 -0.968 0.410 1.260 sum -2.712 23.640 -2.467 23.922 Atomic orbital electron populations 1.22721 0.81990 1.02673 0.99194 1.88118 1.18741 1.26401 1.95131 1.23255 0.95387 0.86016 0.99769 1.22016 0.91204 1.00029 0.90054 1.47931 1.63717 1.09829 1.09264 1.19374 0.96808 0.71642 0.99218 1.21446 1.00349 0.92283 1.42655 0.92615 1.24905 0.97214 0.96403 0.95463 1.69938 1.35324 1.01072 1.46815 0.86604 0.84537 0.77279 0.79214 1.20304 1.21258 1.20325 1.17101 0.78057 0.83865 0.84402 1.90742 1.49661 1.74293 1.27760 1.20771 1.10005 0.95795 1.00305 1.25232 0.98479 0.89838 0.98886 1.77471 1.12940 1.19623 0.99973 1.45528 1.39398 1.03489 1.21019 1.17694 1.00623 0.82523 0.95741 1.20898 0.97877 1.00685 0.94005 1.21062 0.99708 0.91067 1.00287 1.21106 0.97143 0.98867 0.94947 1.21140 1.00041 0.96699 0.97561 1.17313 0.95889 0.92298 0.86468 1.91601 1.72026 1.97076 1.48570 1.22956 0.98470 0.82652 0.99192 0.94598 0.94543 0.89683 0.92679 0.93227 0.88522 0.88781 0.93470 0.93753 0.92786 0.77346 0.83851 0.84122 0.84359 0.83809 0.79166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.36 9.49 -35.23 -0.33 -6.69 16 3 C 0.03 0.49 4.78 37.16 0.18 0.67 16 4 C 0.09 1.55 5.31 -4.04 -0.02 1.52 16 5 N -0.58 -12.66 2.42 -176.34 -0.43 -13.09 16 6 C 0.25 6.68 5.09 -5.19 -0.03 6.66 16 7 C -0.53 -15.20 9.38 -34.44 -0.32 -15.52 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -26.99 13.29 55.43 0.74 -26.26 16 11 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 C 0.58 12.61 7.65 -12.53 -0.10 12.51 16 16 O -0.55 -13.95 16.45 5.27 0.09 -13.86 16 17 C -0.25 -4.40 5.84 -105.05 -0.61 -5.01 16 18 C 0.06 0.95 9.04 -16.95 -0.15 0.79 16 19 N -0.28 -4.36 10.70 30.87 0.33 -4.03 16 20 N -0.32 -4.59 3.77 -10.15 -0.04 -4.63 16 21 C 0.13 1.51 6.69 -83.51 -0.56 0.95 16 22 C -0.11 -0.99 9.45 -39.41 -0.37 -1.36 16 23 C -0.10 -0.64 10.04 -39.60 -0.40 -1.04 16 24 C -0.10 -0.59 10.04 -39.56 -0.40 -0.99 16 25 C -0.14 -1.03 10.02 -39.54 -0.40 -1.43 16 26 C 0.10 1.14 7.29 -39.25 -0.29 0.85 16 27 F -0.11 -1.52 15.52 2.25 0.03 -1.49 16 28 C 0.11 1.67 10.66 -16.43 -0.18 1.50 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.70 7.01 -51.93 -0.36 0.34 16 34 H 0.10 1.71 8.07 -51.93 -0.42 1.29 16 35 H 0.09 1.35 4.44 -51.93 -0.23 1.12 16 36 H 0.05 1.32 7.08 -51.93 -0.37 0.95 16 37 H 0.04 1.35 7.24 -51.93 -0.38 0.97 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 39 H 0.21 2.63 3.59 -52.48 -0.19 2.44 16 40 H 0.14 1.04 6.71 -52.49 -0.35 0.69 16 41 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 42 H 0.14 0.41 8.06 -52.49 -0.42 -0.02 16 43 H 0.14 0.79 8.06 -52.48 -0.42 0.36 16 44 H 0.19 2.36 7.01 -52.48 -0.37 1.99 16 LS Contribution 374.24 15.07 5.64 5.64 Total: -1.00 -37.11 374.24 -6.79 -43.89 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -5.17 Total: 0.12 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -2.62 Total: 3.33 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: 0.60 Total: -48.01 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.25 Total: -20.55 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.03 Total: -1.49 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.11 -6.79 -43.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103215440.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.767 kcal (2) G-P(sol) polarization free energy of solvation -37.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds