Wall clock time and date at job start Wed Apr 1 2020 04:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 114.00131 * 2 1 4 4 C 1.52996 * 109.47198 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.47004 * 64.99894 * 4 3 2 6 6 C 1.46496 * 119.99864 * 84.92852 * 5 4 3 7 7 C 1.50700 * 109.47281 * 95.38687 * 6 5 4 8 8 H 1.08005 * 119.99923 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00001 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00174 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99787 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47170 * 90.00080 * 11 9 7 13 13 H 1.48501 * 109.46958 * 209.99893 * 11 9 7 14 14 H 1.48497 * 109.47248 * 329.99746 * 11 9 7 15 15 C 1.34771 * 119.99651 * 264.92397 * 5 4 3 16 16 O 1.21576 * 120.00214 * 5.45492 * 15 5 4 17 17 C 1.47663 * 119.99549 * 185.45390 * 15 5 4 18 18 C 1.41523 * 126.44081 * 175.02731 * 17 15 5 19 19 C 1.35362 * 105.55872 * 179.97438 * 18 17 15 20 20 N 1.35850 * 107.12614 * 0.02562 * 19 18 17 21 21 C 1.40157 * 124.95693 * 179.97438 * 20 19 18 22 22 C 1.38848 * 120.04583 * 359.72973 * 21 20 19 23 23 C 1.38096 * 119.95664 * 179.74478 * 22 21 20 24 24 C 1.38495 * 120.04109 * 0.55035 * 23 22 21 25 25 F 1.35096 * 119.95484 * 179.72669 * 24 23 22 26 26 C 1.38491 * 120.08552 * 359.70052 * 24 23 22 27 27 C 1.38095 * 120.04540 * 0.02562 * 26 24 23 28 28 N 1.28481 * 110.08155 * 359.72582 * 20 19 18 29 29 H 1.09002 * 109.47116 * 300.00177 * 1 2 3 30 30 H 1.08996 * 109.47505 * 60.00151 * 1 2 3 31 31 H 1.09005 * 109.47367 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47078 * 59.99317 * 3 2 1 33 33 H 1.09004 * 109.46766 * 300.00004 * 3 2 1 34 34 H 1.08992 * 109.47291 * 304.99660 * 4 3 2 35 35 H 1.09000 * 109.46782 * 184.99287 * 4 3 2 36 36 H 1.09002 * 109.46851 * 215.38315 * 6 5 4 37 37 H 1.08998 * 109.47664 * 335.38572 * 6 5 4 38 38 H 0.97004 * 120.00305 * 180.02562 * 10 9 7 39 39 H 1.08004 * 127.22503 * 0.02562 * 18 17 15 40 40 H 1.07997 * 126.43702 * 179.97438 * 19 18 17 41 41 H 1.07998 * 120.01846 * 359.97438 * 22 21 20 42 42 H 1.08003 * 119.97558 * 180.26650 * 23 22 21 43 43 H 1.07997 * 119.97685 * 180.02562 * 26 24 23 44 44 H 1.07998 * 120.01968 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.1792 1.3887 -2.4466 7 6 5.6337 1.7687 -2.5526 8 1 6.3361 1.4304 -1.8051 9 6 6.0677 2.5483 -3.6037 10 7 5.2125 2.9599 -4.5141 11 14 7.8704 3.0200 -3.7346 12 1 8.5952 1.9912 -4.5230 13 1 7.9897 4.3367 -4.4108 14 1 8.4594 3.1069 -2.3742 15 6 4.1932 -0.7646 -1.3063 16 8 3.9301 -1.4628 -0.3465 17 6 4.7514 -1.3725 -2.5308 18 6 5.1245 -2.7269 -2.7020 19 6 5.5785 -2.8204 -3.9738 20 7 5.4792 -1.5832 -4.5260 21 6 5.8500 -1.2571 -5.8377 22 6 6.3686 -2.2342 -6.6768 23 6 6.7285 -1.9121 -7.9706 24 6 6.5829 -0.6128 -8.4276 25 9 6.9407 -0.2984 -9.6919 26 6 6.0706 0.3643 -7.5905 27 6 5.7044 0.0449 -6.2979 28 7 4.9909 -0.7568 -3.6720 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.6885 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8514 0.5683 0.8409 35 1 3.9784 2.1765 0.0888 36 1 3.8856 0.8247 -3.3319 37 1 3.5724 2.2912 -2.3729 38 1 5.5179 3.5081 -5.2538 39 1 5.0597 -3.5198 -1.9716 40 1 5.9506 -3.7110 -4.4582 41 1 6.4871 -3.2463 -6.3191 42 1 7.1279 -2.6728 -8.6249 43 1 5.9575 1.3768 -7.9489 44 1 5.3045 0.8071 -5.6456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103215800.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:41 Heat of formation + Delta-G solvation = 7.733395 kcal Electronic energy + Delta-G solvation = -31118.922301 eV Core-core repulsion = 26761.117467 eV Total energy + Delta-G solvation = -4357.804834 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.85686 -42.34669 -39.02843 -38.51595 -37.21071 -34.88856 -33.07779 -32.57450 -31.40556 -30.37375 -29.68396 -28.43912 -26.94488 -26.00806 -24.16501 -23.37441 -22.96792 -22.32920 -20.84377 -20.59493 -18.66187 -17.91557 -17.31407 -16.69462 -16.29991 -16.02773 -15.98767 -15.70307 -15.56558 -15.35691 -14.98493 -14.61095 -14.47165 -14.29937 -13.75095 -13.53238 -13.49151 -13.13250 -12.97939 -12.56770 -12.54398 -12.36354 -12.17281 -12.13026 -11.71712 -11.54198 -11.34772 -10.95595 -10.90045 -10.86052 -10.65002 -10.17012 -9.73799 -9.62628 -9.60703 -9.31267 -9.13810 -9.12554 -8.76245 -8.40764 -7.88646 -7.57582 -6.09437 -4.10663 0.83475 1.24070 2.45417 2.61816 2.78907 3.23091 3.30427 3.34871 3.71359 3.95824 4.18281 4.25386 4.30158 4.40232 4.60985 4.76891 4.94841 5.06449 5.22446 5.28782 5.39749 5.42455 5.50987 5.60061 5.67166 5.68994 5.73971 5.81314 5.86020 5.91530 6.01706 6.05937 6.10765 6.18465 6.36760 6.41317 6.54367 6.83851 6.84870 6.91284 7.28928 7.46057 7.55232 7.77691 7.84987 8.20046 8.37472 8.51828 8.92451 9.15307 9.51843 10.97096 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010971 B = 0.004095 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.581870 B = 6835.941493 C = 8144.661608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.045 3.955 4 C 0.123 3.877 5 N -0.584 5.584 6 C 0.232 3.768 7 C -0.501 4.501 8 H 0.053 0.947 9 C 0.071 3.929 10 N -0.893 5.893 11 Si 0.877 3.123 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.275 1.275 15 C 0.604 3.396 16 O -0.552 6.552 17 C -0.003 4.003 18 C -0.173 4.173 19 C -0.041 4.041 20 N -0.247 5.247 21 C 0.135 3.865 22 C -0.109 4.109 23 C -0.140 4.140 24 C 0.087 3.913 25 F -0.141 7.141 26 C -0.131 4.131 27 C -0.074 4.074 28 N -0.183 5.183 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.079 0.921 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.030 0.970 38 H 0.261 0.739 39 H 0.160 0.840 40 H 0.175 0.825 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.144 0.856 44 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.219 -7.373 -3.261 8.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C -0.033 4.033 4 C -0.001 4.001 5 N -0.314 5.314 6 C 0.112 3.888 7 C -0.540 4.540 8 H 0.072 0.928 9 C -0.130 4.130 10 N -0.534 5.534 11 Si 0.705 3.295 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.390 3.610 16 O -0.430 6.430 17 C -0.165 4.165 18 C -0.201 4.201 19 C -0.179 4.179 20 N -0.029 5.029 21 C 0.044 3.956 22 C -0.129 4.129 23 C -0.160 4.160 24 C 0.067 3.933 25 F -0.120 7.120 26 C -0.151 4.151 27 C -0.094 4.094 28 N -0.014 5.014 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.048 0.952 38 H 0.070 0.930 39 H 0.178 0.822 40 H 0.193 0.807 41 H 0.157 0.843 42 H 0.159 0.841 43 H 0.162 0.838 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -2.295 -6.715 -3.528 7.925 hybrid contribution 1.123 -0.042 -0.146 1.133 sum -1.172 -6.757 -3.674 7.780 Atomic orbital electron populations 1.22665 0.82521 1.02099 0.99193 1.88112 1.18230 1.27301 1.95169 1.23046 0.95350 0.85062 0.99817 1.21353 0.91196 0.99354 0.88220 1.47978 1.63936 1.06772 1.12709 1.19744 0.96683 0.90262 0.82128 1.21380 0.93617 1.30285 1.08749 0.92831 1.24720 0.96728 0.95928 0.95628 1.69907 1.33548 1.36693 1.13226 0.86826 0.86343 0.77966 0.78403 1.20745 1.21085 1.19994 1.16785 0.77343 0.82086 0.84775 1.90699 1.53532 1.61855 1.36875 1.22129 1.07456 0.92739 0.94169 1.21718 1.05348 0.96879 0.96156 1.22856 1.09266 0.90259 0.95478 1.43086 1.44256 1.06505 1.09056 1.17689 1.01342 0.95077 0.81501 1.20614 1.00395 0.99024 0.92890 1.20793 1.03717 0.95292 0.96185 1.17805 1.01353 0.94126 0.80034 1.91483 1.89704 1.93607 1.37162 1.21153 1.00442 0.99955 0.93502 1.21722 0.95979 0.95936 0.95732 1.74590 1.10829 1.17237 0.98746 0.94792 0.94609 0.90218 0.93262 0.93075 0.89911 0.88957 0.91790 0.95151 0.92962 0.82248 0.80749 0.84322 0.84111 0.83781 0.79636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.37 -6.72 9.87 -36.12 -0.36 -7.08 16 3 C 0.05 0.74 6.28 37.16 0.23 0.98 16 4 C 0.12 2.27 5.80 -4.04 -0.02 2.24 16 5 N -0.58 -12.77 2.43 -176.25 -0.43 -13.20 16 6 C 0.23 5.51 4.78 -5.20 -0.02 5.48 16 7 C -0.50 -12.75 8.07 -34.44 -0.28 -13.03 16 8 H 0.05 1.44 7.81 -52.48 -0.41 1.03 16 9 C 0.07 1.79 5.20 -17.82 -0.09 1.69 16 10 N -0.89 -22.72 12.04 55.43 0.67 -22.05 16 11 Si 0.88 20.40 29.54 -169.99 -5.02 15.38 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 C 0.60 13.73 7.40 -12.41 -0.09 13.64 16 16 O -0.55 -13.13 15.92 4.41 0.07 -13.06 16 17 C 0.00 -0.06 6.74 -82.75 -0.56 -0.62 16 18 C -0.17 -3.06 10.80 -39.36 -0.43 -3.49 16 19 C -0.04 -0.63 10.78 -16.80 -0.18 -0.81 16 20 N -0.25 -4.56 3.52 -10.54 -0.04 -4.60 16 21 C 0.14 2.28 6.66 -83.60 -0.56 1.73 16 22 C -0.11 -1.39 9.43 -39.41 -0.37 -1.76 16 23 C -0.14 -1.69 10.02 -39.54 -0.40 -2.08 16 24 C 0.09 1.21 7.30 -39.39 -0.29 0.92 16 25 F -0.14 -1.94 17.26 2.25 0.04 -1.90 16 26 C -0.13 -2.06 10.02 -39.54 -0.40 -2.46 16 27 C -0.07 -1.36 9.59 -39.41 -0.38 -1.74 16 28 N -0.18 -3.96 6.83 33.42 0.23 -3.73 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 1.56 7.35 -51.93 -0.38 1.17 16 35 H 0.09 1.58 8.11 -51.93 -0.42 1.16 16 36 H 0.06 1.62 5.63 -51.93 -0.29 1.33 16 37 H 0.03 0.75 8.03 -51.93 -0.42 0.33 16 38 H 0.26 6.38 8.31 -40.82 -0.34 6.04 16 39 H 0.16 2.48 8.06 -52.48 -0.42 2.05 16 40 H 0.18 1.84 6.96 -52.49 -0.37 1.48 16 41 H 0.14 1.32 6.64 -52.49 -0.35 0.98 16 42 H 0.14 1.26 8.06 -52.48 -0.42 0.83 16 43 H 0.14 2.10 8.06 -52.49 -0.42 1.68 16 44 H 0.19 4.03 6.07 -52.49 -0.32 3.72 16 LS Contribution 378.40 15.07 5.70 5.70 Total: -1.00 -30.44 378.40 -7.32 -37.76 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.47 Total: 4.54 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -2.72 Total: 2.24 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.43 Total: -43.59 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.29 Total: -20.14 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.44 -7.32 -37.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103215800.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.497 kcal (2) G-P(sol) polarization free energy of solvation -30.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds