Wall clock time and date at job start Wed Apr 1 2020 04:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 114.00131 * 2 1 4 4 C 1.52996 * 109.47198 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.47004 * 64.99894 * 4 3 2 6 6 C 1.46496 * 119.99864 * 84.92852 * 5 4 3 7 7 C 1.50700 * 109.47281 * 95.38687 * 6 5 4 8 8 H 1.08005 * 119.99923 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00001 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00174 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99787 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47170 * 90.00080 * 11 9 7 13 13 H 1.48501 * 109.46958 * 209.99893 * 11 9 7 14 14 H 1.48497 * 109.47248 * 329.99746 * 11 9 7 15 15 C 1.34771 * 119.99651 * 264.92397 * 5 4 3 16 16 O 1.21576 * 120.00214 * 5.45492 * 15 5 4 17 17 C 1.47663 * 119.99549 * 185.45390 * 15 5 4 18 18 C 1.41523 * 126.44081 * 175.02731 * 17 15 5 19 19 C 1.35362 * 105.55872 * 179.97438 * 18 17 15 20 20 N 1.35850 * 107.12614 * 0.02562 * 19 18 17 21 21 C 1.40157 * 124.95693 * 179.97438 * 20 19 18 22 22 C 1.38848 * 120.04583 * 359.72973 * 21 20 19 23 23 C 1.38096 * 119.95664 * 179.74478 * 22 21 20 24 24 C 1.38495 * 120.04109 * 0.55035 * 23 22 21 25 25 F 1.35096 * 119.95484 * 179.72669 * 24 23 22 26 26 C 1.38491 * 120.08552 * 359.70052 * 24 23 22 27 27 C 1.38095 * 120.04540 * 0.02562 * 26 24 23 28 28 N 1.28481 * 110.08155 * 359.72582 * 20 19 18 29 29 H 1.09002 * 109.47116 * 300.00177 * 1 2 3 30 30 H 1.08996 * 109.47505 * 60.00151 * 1 2 3 31 31 H 1.09005 * 109.47367 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47078 * 59.99317 * 3 2 1 33 33 H 1.09004 * 109.46766 * 300.00004 * 3 2 1 34 34 H 1.08992 * 109.47291 * 304.99660 * 4 3 2 35 35 H 1.09000 * 109.46782 * 184.99287 * 4 3 2 36 36 H 1.09002 * 109.46851 * 215.38315 * 6 5 4 37 37 H 1.08998 * 109.47664 * 335.38572 * 6 5 4 38 38 H 0.97004 * 120.00305 * 180.02562 * 10 9 7 39 39 H 1.08004 * 127.22503 * 0.02562 * 18 17 15 40 40 H 1.07997 * 126.43702 * 179.97438 * 19 18 17 41 41 H 1.07998 * 120.01846 * 359.97438 * 22 21 20 42 42 H 1.08003 * 119.97558 * 180.26650 * 23 22 21 43 43 H 1.07997 * 119.97685 * 180.02562 * 26 24 23 44 44 H 1.07998 * 120.01968 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.1792 1.3887 -2.4466 7 6 5.6337 1.7687 -2.5526 8 1 6.3361 1.4304 -1.8051 9 6 6.0677 2.5483 -3.6037 10 7 5.2125 2.9599 -4.5141 11 14 7.8704 3.0200 -3.7346 12 1 8.5952 1.9912 -4.5230 13 1 7.9897 4.3367 -4.4108 14 1 8.4594 3.1069 -2.3742 15 6 4.1932 -0.7646 -1.3063 16 8 3.9301 -1.4628 -0.3465 17 6 4.7514 -1.3725 -2.5308 18 6 5.1245 -2.7269 -2.7020 19 6 5.5785 -2.8204 -3.9738 20 7 5.4792 -1.5832 -4.5260 21 6 5.8500 -1.2571 -5.8377 22 6 6.3686 -2.2342 -6.6768 23 6 6.7285 -1.9121 -7.9706 24 6 6.5829 -0.6128 -8.4276 25 9 6.9407 -0.2984 -9.6919 26 6 6.0706 0.3643 -7.5905 27 6 5.7044 0.0449 -6.2979 28 7 4.9909 -0.7568 -3.6720 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.6885 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8514 0.5683 0.8409 35 1 3.9784 2.1765 0.0888 36 1 3.8856 0.8247 -3.3319 37 1 3.5724 2.2912 -2.3729 38 1 5.5179 3.5081 -5.2538 39 1 5.0597 -3.5198 -1.9716 40 1 5.9506 -3.7110 -4.4582 41 1 6.4871 -3.2463 -6.3191 42 1 7.1279 -2.6728 -8.6249 43 1 5.9575 1.3768 -7.9489 44 1 5.3045 0.8071 -5.6456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103215800.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:40 Heat of formation + Delta-G solvation = -9.301645 kcal Electronic energy + Delta-G solvation = -31119.660996 eV Core-core repulsion = 26761.117467 eV Total energy + Delta-G solvation = -4358.543529 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.95380 -43.72197 -40.55239 -39.79526 -38.57958 -36.64122 -34.51617 -34.34775 -32.58845 -31.74207 -31.07337 -29.76324 -28.77434 -27.21161 -25.60251 -24.83192 -24.51601 -23.65360 -22.24076 -21.86399 -20.12992 -19.26075 -18.56076 -18.46562 -17.88007 -17.46081 -17.17658 -17.03220 -16.97359 -16.59586 -16.41830 -16.27507 -15.91635 -15.59200 -15.10067 -14.93235 -14.68135 -14.56776 -14.20969 -14.18100 -13.87600 -13.78389 -13.52512 -13.44457 -13.30100 -13.01268 -12.98693 -12.72776 -12.58112 -12.12710 -12.06544 -11.92750 -11.64601 -11.21074 -10.95100 -10.92541 -10.53641 -10.40291 -10.23610 -10.07434 -9.41059 -9.08870 -8.06871 -6.13081 -0.35534 0.13423 0.93823 1.33035 1.35980 1.38166 1.44009 1.51808 2.32099 2.49231 2.51844 2.67125 2.98170 3.16305 3.23616 3.40714 3.70755 3.78481 3.93668 4.03194 4.17208 4.18861 4.26612 4.36931 4.43622 4.54247 4.55272 4.61092 4.67918 4.75718 4.81091 4.83233 4.89228 4.94514 4.97925 5.03800 5.17871 5.27212 5.40197 5.53047 5.66986 5.81542 5.95354 6.16778 6.24090 6.35384 6.60992 6.87995 7.10120 7.42593 7.53645 8.98730 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010971 B = 0.004095 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.581870 B = 6835.941493 C = 8144.661608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.052 3.948 4 C 0.115 3.885 5 N -0.588 5.588 6 C 0.253 3.747 7 C -0.506 4.506 8 H 0.033 0.967 9 C 0.047 3.953 10 N -0.903 5.903 11 Si 0.920 3.080 12 H -0.284 1.284 13 H -0.278 1.278 14 H -0.279 1.279 15 C 0.595 3.405 16 O -0.572 6.572 17 C -0.040 4.040 18 C -0.189 4.189 19 C -0.013 4.013 20 N -0.251 5.251 21 C 0.108 3.892 22 C -0.087 4.087 23 C -0.120 4.120 24 C 0.088 3.912 25 F -0.139 7.139 26 C -0.143 4.143 27 C -0.106 4.106 28 N -0.221 5.221 29 H 0.058 0.942 30 H 0.039 0.961 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.049 0.951 37 H 0.016 0.984 38 H 0.263 0.737 39 H 0.176 0.824 40 H 0.234 0.766 41 H 0.184 0.816 42 H 0.186 0.814 43 H 0.141 0.859 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.211 -9.648 -4.750 10.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C -0.026 4.026 4 C -0.008 4.008 5 N -0.318 5.318 6 C 0.132 3.868 7 C -0.545 4.545 8 H 0.051 0.949 9 C -0.153 4.153 10 N -0.544 5.544 11 Si 0.748 3.252 12 H -0.210 1.210 13 H -0.203 1.203 14 H -0.205 1.205 15 C 0.383 3.617 16 O -0.452 6.452 17 C -0.201 4.201 18 C -0.216 4.216 19 C -0.151 4.151 20 N -0.033 5.033 21 C 0.018 3.982 22 C -0.107 4.107 23 C -0.139 4.139 24 C 0.068 3.932 25 F -0.117 7.117 26 C -0.162 4.162 27 C -0.126 4.126 28 N -0.054 5.054 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.119 0.881 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.072 0.928 39 H 0.194 0.806 40 H 0.250 0.750 41 H 0.201 0.799 42 H 0.203 0.797 43 H 0.159 0.841 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.304 -8.961 -5.015 10.351 hybrid contribution 0.812 0.631 0.194 1.046 sum -0.492 -8.330 -4.821 9.637 Atomic orbital electron populations 1.22857 0.80309 1.03175 1.00530 1.88057 1.20788 1.28173 1.95453 1.22973 0.93588 0.84922 1.01074 1.21571 0.93146 0.99381 0.86676 1.48020 1.63929 1.06721 1.13116 1.19322 0.95486 0.89423 0.82538 1.21288 0.93958 1.30726 1.08566 0.94893 1.25100 0.99054 0.95866 0.95319 1.69960 1.34510 1.36640 1.13249 0.86150 0.83395 0.77786 0.77889 1.21035 1.20302 1.20450 1.17120 0.77118 0.82161 0.85321 1.90653 1.54663 1.62119 1.37744 1.22251 1.09146 0.94702 0.93982 1.22012 1.06146 0.95653 0.97817 1.23649 1.06489 0.90554 0.94411 1.43307 1.43507 1.07192 1.09311 1.18056 1.03073 0.95641 0.81479 1.21078 0.97672 0.99829 0.92150 1.21275 1.01462 0.94980 0.96197 1.17902 1.00795 0.94697 0.79772 1.91495 1.89572 1.93734 1.36911 1.21113 1.01259 1.00705 0.93165 1.21446 0.98334 0.96413 0.96409 1.74491 1.12408 1.19049 0.99434 0.92342 0.94270 0.89382 0.89735 0.93831 0.90443 0.88066 0.93372 0.96579 0.92785 0.80630 0.74965 0.79855 0.79675 0.84109 0.83577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.98 16 2 O -0.41 -14.90 9.87 -148.13 -1.46 -16.36 16 3 C 0.05 1.72 6.28 71.98 0.45 2.17 16 4 C 0.12 4.41 5.80 86.38 0.50 4.92 16 5 N -0.59 -27.02 2.43 -829.80 -2.02 -29.04 16 6 C 0.25 12.71 4.78 85.63 0.41 13.12 16 7 C -0.51 -26.92 8.07 25.60 0.21 -26.71 16 8 H 0.03 1.85 7.81 -2.91 -0.02 1.83 16 9 C 0.05 2.43 5.20 84.66 0.44 2.87 16 10 N -0.90 -47.64 12.04 21.45 0.26 -47.38 16 11 Si 0.92 42.69 29.54 68.60 2.03 44.72 16 12 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 13 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 14 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 15 C 0.60 28.27 7.40 86.73 0.64 28.91 16 16 O -0.57 -28.19 15.92 -3.10 -0.05 -28.23 16 17 C -0.04 -1.77 6.74 42.44 0.29 -1.48 16 18 C -0.19 -6.51 10.80 22.42 0.24 -6.26 16 19 C -0.01 -0.37 10.78 83.41 0.90 0.52 16 20 N -0.25 -9.05 3.52 -187.28 -0.66 -9.70 16 21 C 0.11 3.49 6.66 38.10 0.25 3.75 16 22 C -0.09 -1.83 9.43 22.38 0.21 -1.62 16 23 C -0.12 -2.30 10.02 22.30 0.22 -2.08 16 24 C 0.09 2.24 7.30 22.39 0.16 2.40 16 25 F -0.14 -3.46 17.26 44.97 0.78 -2.68 16 26 C -0.14 -4.50 10.02 22.30 0.22 -4.27 16 27 C -0.11 -3.97 9.59 22.38 0.21 -3.75 16 28 N -0.22 -9.89 6.83 -48.17 -0.33 -10.22 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 32 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.08 3.03 7.35 -2.39 -0.02 3.01 16 35 H 0.10 3.59 8.11 -2.39 -0.02 3.57 16 36 H 0.05 2.61 5.63 -2.39 -0.01 2.60 16 37 H 0.02 0.84 8.03 -2.39 -0.02 0.82 16 38 H 0.26 13.25 8.31 -92.70 -0.77 12.48 16 39 H 0.18 5.25 8.06 -2.91 -0.02 5.23 16 40 H 0.23 3.44 6.96 -2.91 -0.02 3.42 16 41 H 0.18 2.16 6.64 -2.91 -0.02 2.14 16 42 H 0.19 1.99 8.06 -2.91 -0.02 1.97 16 43 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 44 H 0.15 6.73 6.07 -2.91 -0.02 6.72 16 Total: -1.00 -71.28 378.40 6.20 -65.08 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 1.03 Total: 19.37 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 6.62 Total: 14.46 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -2.75 Total: -96.35 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -1.51 Total: -44.59 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.78 Total: -2.68 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -71.28 6.20 -65.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103215800.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.779 kcal (2) G-P(sol) polarization free energy of solvation -71.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds