Wall clock time and date at job start Wed Apr 1 2020 04:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86800 * 119.99876 * 2 1 4 4 H 1.48495 * 109.47262 * 270.00208 * 3 2 1 5 5 H 1.48499 * 109.47054 * 30.00676 * 3 2 1 6 6 H 1.48504 * 109.46889 * 150.00270 * 3 2 1 7 7 C 1.38649 * 119.99690 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99764 * 179.97438 * 7 2 1 9 9 O 1.34832 * 120.00504 * 359.97438 * 7 2 1 10 10 C 1.35748 * 117.00114 * 185.05985 * 9 7 2 11 11 C 1.38880 * 120.06904 * 354.45797 * 10 9 7 12 12 C 1.38102 * 119.93134 * 180.02562 * 11 10 9 13 13 C 1.38306 * 120.06591 * 0.03066 * 12 11 10 14 14 C 1.50700 * 119.92793 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.46788 * 90.00107 * 14 13 12 16 16 O 1.21282 * 120.00100 * 359.97438 * 15 14 13 17 17 N 1.34778 * 120.00029 * 179.97438 * 15 14 13 18 18 C 1.46916 * 120.63179 * 180.02562 * 17 15 14 19 19 C 1.53191 * 108.78509 * 126.14944 * 18 17 15 20 20 C 1.52986 * 109.33476 * 54.40209 * 19 18 17 21 21 C 1.52996 * 109.90692 * 299.08209 * 20 19 18 22 22 C 1.46935 * 120.62382 * 359.97438 * 17 15 14 23 23 O 1.43302 * 109.65163 * 59.66049 * 20 19 18 24 24 C 1.44215 * 107.27133 * 120.32284 * 23 20 19 25 25 C 1.54923 * 103.22883 * 21.32675 * 24 23 20 26 26 O 1.43705 * 109.40183 * 178.96532 * 20 19 18 27 27 C 1.38302 * 120.14146 * 0.24766 * 13 12 11 28 28 C 1.38103 * 120.06536 * 359.45139 * 27 13 12 29 29 H 0.96996 * 120.00297 * 359.97438 * 1 2 3 30 30 H 1.07993 * 120.03383 * 0.02562 * 11 10 9 31 31 H 1.07994 * 119.96741 * 180.02562 * 12 11 10 32 32 H 1.09001 * 109.47335 * 330.00061 * 14 13 12 33 33 H 1.08994 * 109.47066 * 209.99835 * 14 13 12 34 34 H 1.09000 * 109.58467 * 6.35712 * 18 17 15 35 35 H 1.09004 * 109.58446 * 245.94119 * 18 17 15 36 36 H 1.08997 * 109.49565 * 294.44230 * 19 18 17 37 37 H 1.09005 * 109.51927 * 174.36736 * 19 18 17 38 38 H 1.08998 * 109.49865 * 180.88597 * 21 20 19 39 39 H 1.09000 * 109.49366 * 300.98038 * 21 20 19 40 40 H 1.08991 * 109.58713 * 353.64864 * 22 17 15 41 41 H 1.08998 * 109.58381 * 114.07510 * 22 17 15 42 42 H 1.08994 * 110.69621 * 139.81057 * 24 23 20 43 43 H 1.09000 * 110.69400 * 262.84581 * 24 23 20 44 44 H 1.08998 * 110.97426 * 82.67353 * 25 24 23 45 45 H 1.09001 * 110.97603 * 206.45037 * 25 24 23 46 46 H 1.07996 * 119.96758 * 179.70642 * 27 13 12 47 47 H 1.07998 * 120.03413 * 180.27022 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4471 2.6526 0.7002 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 3.4572 -3.4395 0.0920 12 6 4.2024 -4.5972 0.1997 13 6 3.5687 -5.8205 0.3202 14 6 4.3850 -7.0819 0.4369 15 6 4.6644 -7.3668 1.8902 16 8 4.2426 -6.6189 2.7467 17 7 5.3830 -8.4526 2.2380 18 6 5.6631 -8.7439 3.6505 19 6 5.2061 -10.1730 3.9595 20 6 5.8629 -11.1395 2.9722 21 6 5.4410 -10.7912 1.5434 22 6 5.9001 -9.3682 1.2117 23 8 7.2885 -11.0519 3.0881 24 6 7.7698 -12.3616 3.4526 25 6 6.6213 -13.2992 3.0030 26 8 5.4541 -12.4833 3.2760 27 6 2.1874 -5.8893 0.3283 28 6 1.4366 -4.7346 0.2272 29 1 -0.4850 0.8400 0.0004 30 1 3.9526 -2.4846 -0.0026 31 1 5.2812 -4.5472 0.1896 32 1 5.3273 -6.9556 -0.0963 33 1 3.8310 -7.9145 0.0034 34 1 5.1200 -8.0417 4.2830 35 1 6.7333 -8.6542 3.8368 36 1 4.1221 -10.2368 3.8645 37 1 5.4983 -10.4371 4.9759 38 1 5.8999 -11.4932 0.8472 39 1 4.3559 -10.8518 1.4595 40 1 5.5135 -9.0780 0.2349 41 1 6.9893 -9.3288 1.2023 42 1 8.6902 -12.5963 2.9182 43 1 7.9232 -12.4296 4.5296 44 1 6.6969 -13.5265 1.9397 45 1 6.6092 -14.2136 3.5961 46 1 1.6954 -6.8465 0.4178 47 1 0.3580 -4.7884 0.2380 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110621899.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:51 Heat of formation + Delta-G solvation = -117.377365 kcal Electronic energy + Delta-G solvation = -30158.664005 eV Core-core repulsion = 25886.601514 eV Total energy + Delta-G solvation = -4272.062490 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.35923 -39.86859 -38.79702 -36.93021 -36.22399 -35.44292 -32.83225 -32.30974 -31.72918 -30.91639 -30.08003 -29.22691 -26.75375 -25.22132 -24.50101 -24.01112 -23.39344 -21.90384 -21.37995 -20.41331 -19.05455 -17.91688 -17.74978 -17.31703 -16.90659 -16.71127 -16.08381 -15.94912 -15.55631 -14.85308 -14.68843 -14.52084 -14.29388 -14.19124 -14.11577 -13.75713 -13.61328 -13.51355 -13.30675 -13.18742 -12.80673 -12.62652 -12.56937 -12.41964 -12.29359 -11.91943 -11.77840 -11.64293 -11.44993 -11.30369 -11.19738 -10.77802 -10.70539 -10.66547 -10.55330 -10.37962 -9.98633 -9.59449 -9.25949 -8.77761 -8.76177 -8.07938 -7.09384 -6.38858 -3.97301 2.31175 2.32617 2.74086 2.92614 2.94205 3.16850 3.18359 3.23028 3.46237 4.02177 4.03002 4.20731 4.22651 4.40399 4.51995 4.62840 4.64340 4.79854 4.89512 4.95067 5.03807 5.06145 5.11327 5.14721 5.21931 5.27712 5.30318 5.32760 5.38681 5.43734 5.51032 5.64255 5.69263 5.73211 5.79915 5.85170 5.91632 6.28364 6.40078 6.48779 6.61930 6.77156 6.98399 7.12023 7.30337 7.36661 7.44127 7.51731 7.90948 8.06603 8.32056 9.06944 9.78006 10.79372 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.032724 B = 0.001847 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.425614 B =15155.888119 C =15378.674992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.179 6.179 10 C 0.156 3.844 11 C -0.232 4.232 12 C -0.056 4.056 13 C -0.170 4.170 14 C -0.079 4.079 15 C 0.513 3.487 16 O -0.518 6.518 17 N -0.623 5.623 18 C 0.119 3.881 19 C -0.134 4.134 20 C 0.260 3.740 21 C -0.152 4.152 22 C 0.115 3.885 23 O -0.372 6.372 24 C 0.020 3.980 25 C 0.015 3.985 26 O -0.372 6.372 27 C -0.060 4.060 28 C -0.191 4.191 29 H 0.269 0.731 30 H 0.126 0.874 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.100 0.900 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.109 0.891 46 H 0.108 0.892 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.458 -27.484 3.560 32.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.466 4.466 8 H 0.109 0.891 9 O -0.082 6.082 10 C 0.103 3.897 11 C -0.251 4.251 12 C -0.075 4.075 13 C -0.171 4.171 14 C -0.119 4.119 15 C 0.302 3.698 16 O -0.392 6.392 17 N -0.359 5.359 18 C -0.003 4.003 19 C -0.172 4.172 20 C 0.183 3.817 21 C -0.191 4.191 22 C -0.008 4.008 23 O -0.293 6.293 24 C -0.057 4.057 25 C -0.061 4.061 26 O -0.292 6.292 27 C -0.078 4.078 28 C -0.210 4.210 29 H 0.079 0.921 30 H 0.144 0.856 31 H 0.122 0.878 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.094 0.906 42 H 0.118 0.882 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.127 0.873 46 H 0.126 0.874 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 15.682 -26.692 4.052 31.222 hybrid contribution 0.686 0.415 0.002 0.802 sum 16.369 -26.277 4.054 31.222 Atomic orbital electron populations 1.70042 1.05930 1.27562 1.46372 1.25283 0.95845 0.98800 0.96663 0.85716 0.78955 0.80153 0.78628 1.19932 1.20289 1.19208 1.21325 0.91794 0.80863 1.52652 0.89101 1.83975 1.34343 1.11446 1.78477 1.19379 0.90291 0.88023 0.92026 1.21102 0.93806 0.98745 1.11479 1.20505 0.98029 0.91771 0.97168 1.18647 0.93205 0.92774 1.12464 1.20444 1.01059 0.97944 0.92407 1.21076 0.76846 0.79665 0.92235 1.90737 1.49857 1.46591 1.52035 1.48223 1.54980 1.25924 1.06803 1.21420 1.01302 0.94791 0.82826 1.22211 1.01607 0.94311 0.99113 1.23286 0.80180 0.83538 0.94705 1.22520 1.03072 0.97916 0.95598 1.21595 0.99673 0.87604 0.91918 1.88916 1.19945 1.29934 1.90514 1.24191 0.98208 0.81891 1.01394 1.24418 0.83837 0.95932 1.01960 1.89314 1.34648 1.17145 1.88111 1.20391 0.92754 0.96686 0.97965 1.20151 0.99468 0.90284 1.11144 0.92099 0.85602 0.87846 0.89031 0.89046 0.88356 0.90943 0.89665 0.89743 0.90019 0.89438 0.88928 0.90579 0.88224 0.90594 0.90568 0.87329 0.87439 0.86565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.95 13.67 55.48 0.76 -25.20 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 21.11 29.55 -169.99 -5.02 16.09 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.39 -11.26 9.49 30.88 0.29 -10.96 16 8 H 0.09 2.44 5.20 -52.48 -0.27 2.16 16 9 O -0.18 -5.30 9.76 0.05 0.00 -5.29 16 10 C 0.16 3.97 6.65 -39.11 -0.26 3.71 16 11 C -0.23 -5.33 9.17 -39.39 -0.36 -5.69 16 12 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16 13 C -0.17 -3.04 4.38 -104.57 -0.46 -3.50 16 14 C -0.08 -1.03 4.17 -29.03 -0.12 -1.15 16 15 C 0.51 7.52 7.69 -10.98 -0.08 7.44 16 16 O -0.52 -10.11 15.45 5.56 0.09 -10.02 16 17 N -0.62 -7.02 2.97 -172.79 -0.51 -7.54 16 18 C 0.12 1.28 6.21 -3.72 -0.02 1.26 16 19 C -0.13 -1.24 5.49 -26.64 -0.15 -1.38 16 20 C 0.26 2.18 1.02 -26.74 -0.03 2.16 16 21 C -0.15 -1.13 5.44 -26.65 -0.15 -1.28 16 22 C 0.12 0.92 6.12 -3.72 -0.02 0.90 16 23 O -0.37 -3.04 9.71 -59.04 -0.57 -3.61 16 24 C 0.02 0.10 8.07 38.17 0.31 0.41 16 25 C 0.01 0.07 7.94 38.17 0.30 0.38 16 26 O -0.37 -3.18 10.98 -59.04 -0.65 -3.83 16 27 C -0.06 -1.13 9.69 -39.61 -0.38 -1.52 16 28 C -0.19 -4.28 9.99 -39.39 -0.39 -4.67 16 29 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 31 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 32 H 0.09 0.98 7.88 -51.93 -0.41 0.57 16 33 H 0.09 0.96 7.63 -51.93 -0.40 0.56 16 34 H 0.10 1.23 7.00 -51.93 -0.36 0.87 16 35 H 0.07 0.74 7.85 -51.93 -0.41 0.34 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 0.60 5.93 -51.93 -0.31 0.30 16 41 H 0.08 0.59 7.85 -51.93 -0.41 0.18 16 42 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 47 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 LS Contribution 382.71 15.07 5.77 5.77 Total: -1.00 -35.99 382.71 -8.80 -44.78 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.65 Total: 3.25 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -2.00 Total: -14.41 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.25 Total: -32.73 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -1.14 Total: -22.75 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.99 -8.80 -44.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110621899.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.595 kcal (2) G-P(sol) polarization free energy of solvation -35.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds