Wall clock time and date at job start Wed Apr 1 2020 04:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86800 * 119.99876 * 2 1 4 4 H 1.48495 * 109.47262 * 270.00208 * 3 2 1 5 5 H 1.48499 * 109.47054 * 30.00676 * 3 2 1 6 6 H 1.48504 * 109.46889 * 150.00270 * 3 2 1 7 7 C 1.38649 * 119.99690 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99764 * 179.97438 * 7 2 1 9 9 O 1.34832 * 120.00504 * 359.97438 * 7 2 1 10 10 C 1.35748 * 117.00114 * 185.05985 * 9 7 2 11 11 C 1.38880 * 120.06904 * 354.45797 * 10 9 7 12 12 C 1.38102 * 119.93134 * 180.02562 * 11 10 9 13 13 C 1.38306 * 120.06591 * 0.03066 * 12 11 10 14 14 C 1.50700 * 119.92793 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.46788 * 90.00107 * 14 13 12 16 16 O 1.21282 * 120.00100 * 359.97438 * 15 14 13 17 17 N 1.34778 * 120.00029 * 179.97438 * 15 14 13 18 18 C 1.46916 * 120.63179 * 180.02562 * 17 15 14 19 19 C 1.53191 * 108.78509 * 126.14944 * 18 17 15 20 20 C 1.52986 * 109.33476 * 54.40209 * 19 18 17 21 21 C 1.52996 * 109.90692 * 299.08209 * 20 19 18 22 22 C 1.46935 * 120.62382 * 359.97438 * 17 15 14 23 23 O 1.43302 * 109.65163 * 59.66049 * 20 19 18 24 24 C 1.44215 * 107.27133 * 120.32284 * 23 20 19 25 25 C 1.54923 * 103.22883 * 21.32675 * 24 23 20 26 26 O 1.43705 * 109.40183 * 178.96532 * 20 19 18 27 27 C 1.38302 * 120.14146 * 0.24766 * 13 12 11 28 28 C 1.38103 * 120.06536 * 359.45139 * 27 13 12 29 29 H 0.96996 * 120.00297 * 359.97438 * 1 2 3 30 30 H 1.07993 * 120.03383 * 0.02562 * 11 10 9 31 31 H 1.07994 * 119.96741 * 180.02562 * 12 11 10 32 32 H 1.09001 * 109.47335 * 330.00061 * 14 13 12 33 33 H 1.08994 * 109.47066 * 209.99835 * 14 13 12 34 34 H 1.09000 * 109.58467 * 6.35712 * 18 17 15 35 35 H 1.09004 * 109.58446 * 245.94119 * 18 17 15 36 36 H 1.08997 * 109.49565 * 294.44230 * 19 18 17 37 37 H 1.09005 * 109.51927 * 174.36736 * 19 18 17 38 38 H 1.08998 * 109.49865 * 180.88597 * 21 20 19 39 39 H 1.09000 * 109.49366 * 300.98038 * 21 20 19 40 40 H 1.08991 * 109.58713 * 353.64864 * 22 17 15 41 41 H 1.08998 * 109.58381 * 114.07510 * 22 17 15 42 42 H 1.08994 * 110.69621 * 139.81057 * 24 23 20 43 43 H 1.09000 * 110.69400 * 262.84581 * 24 23 20 44 44 H 1.08998 * 110.97426 * 82.67353 * 25 24 23 45 45 H 1.09001 * 110.97603 * 206.45037 * 25 24 23 46 46 H 1.07996 * 119.96758 * 179.70642 * 27 13 12 47 47 H 1.07998 * 120.03413 * 180.27022 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4471 2.6526 0.7002 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 3.4572 -3.4395 0.0920 12 6 4.2024 -4.5972 0.1997 13 6 3.5687 -5.8205 0.3202 14 6 4.3850 -7.0819 0.4369 15 6 4.6644 -7.3668 1.8902 16 8 4.2426 -6.6189 2.7467 17 7 5.3830 -8.4526 2.2380 18 6 5.6631 -8.7439 3.6505 19 6 5.2061 -10.1730 3.9595 20 6 5.8629 -11.1395 2.9722 21 6 5.4410 -10.7912 1.5434 22 6 5.9001 -9.3682 1.2117 23 8 7.2885 -11.0519 3.0881 24 6 7.7698 -12.3616 3.4526 25 6 6.6213 -13.2992 3.0030 26 8 5.4541 -12.4833 3.2760 27 6 2.1874 -5.8893 0.3283 28 6 1.4366 -4.7346 0.2272 29 1 -0.4850 0.8400 0.0004 30 1 3.9526 -2.4846 -0.0026 31 1 5.2812 -4.5472 0.1896 32 1 5.3273 -6.9556 -0.0963 33 1 3.8310 -7.9145 0.0034 34 1 5.1200 -8.0417 4.2830 35 1 6.7333 -8.6542 3.8368 36 1 4.1221 -10.2368 3.8645 37 1 5.4983 -10.4371 4.9759 38 1 5.8999 -11.4932 0.8472 39 1 4.3559 -10.8518 1.4595 40 1 5.5135 -9.0780 0.2349 41 1 6.9893 -9.3288 1.2023 42 1 8.6902 -12.5963 2.9182 43 1 7.9232 -12.4296 4.5296 44 1 6.6969 -13.5265 1.9397 45 1 6.6092 -14.2136 3.5961 46 1 1.6954 -6.8465 0.4178 47 1 0.3580 -4.7884 0.2380 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110621899.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:50 Heat of formation + Delta-G solvation = -141.787113 kcal Electronic energy + Delta-G solvation = -30159.722491 eV Core-core repulsion = 25886.601514 eV Total energy + Delta-G solvation = -4273.120976 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.97768 -41.04247 -40.40995 -38.35378 -37.48540 -35.97658 -34.41731 -33.65104 -32.64601 -32.04026 -31.76023 -29.78142 -28.24677 -27.07767 -25.35222 -24.63724 -23.94881 -23.62866 -22.59610 -21.56082 -19.99053 -19.81505 -18.82368 -18.45816 -17.98965 -17.33338 -17.01668 -16.69297 -16.60100 -16.32286 -16.14444 -15.82365 -15.51585 -15.33770 -15.18968 -14.87226 -14.77010 -14.53780 -14.38481 -14.30209 -14.12694 -13.86468 -13.59689 -13.37229 -13.26311 -12.96734 -12.84773 -12.76484 -12.57160 -12.48355 -12.31466 -12.24779 -12.18740 -12.11277 -11.91095 -11.17209 -11.10018 -10.90754 -10.74034 -10.48287 -9.75734 -9.70738 -8.89132 -8.46928 -6.15062 0.62317 0.67743 1.33799 1.43535 1.51969 1.68323 2.00981 2.17949 2.43547 2.82776 2.92259 3.15842 3.52116 3.55485 3.61691 3.74169 3.84740 3.93240 4.03011 4.05823 4.10424 4.19651 4.23265 4.25220 4.27534 4.44824 4.49870 4.55672 4.61198 4.65734 4.68285 4.74294 4.76931 4.80581 4.81018 4.88812 4.97867 5.03442 5.09620 5.14980 5.18176 5.31202 5.52345 5.59032 5.72339 5.78656 6.03374 6.11988 6.22528 6.42976 6.97543 7.25008 7.79046 8.76550 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.032724 B = 0.001847 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.425614 B =15155.888119 C =15378.674992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.025 4.025 3 Si 1.020 2.980 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.414 4.414 8 H 0.100 0.900 9 O -0.234 6.234 10 C 0.112 3.888 11 C -0.244 4.244 12 C -0.060 4.060 13 C -0.145 4.145 14 C -0.077 4.077 15 C 0.512 3.488 16 O -0.580 6.580 17 N -0.614 5.614 18 C 0.121 3.879 19 C -0.131 4.131 20 C 0.259 3.741 21 C -0.149 4.149 22 C 0.111 3.889 23 O -0.387 6.387 24 C 0.014 3.986 25 C 0.011 3.989 26 O -0.394 6.394 27 C -0.057 4.057 28 C -0.206 4.206 29 H 0.273 0.727 30 H 0.117 0.883 31 H 0.138 0.862 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.117 0.883 41 H 0.086 0.914 42 H 0.122 0.878 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.126 0.874 46 H 0.146 0.854 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.815 -30.683 2.636 36.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.490 4.490 8 H 0.117 0.883 9 O -0.141 6.141 10 C 0.062 3.938 11 C -0.263 4.263 12 C -0.078 4.078 13 C -0.146 4.146 14 C -0.116 4.116 15 C 0.302 3.698 16 O -0.459 6.459 17 N -0.348 5.348 18 C -0.002 4.002 19 C -0.170 4.170 20 C 0.182 3.818 21 C -0.187 4.187 22 C -0.011 4.011 23 O -0.308 6.308 24 C -0.061 4.061 25 C -0.064 4.064 26 O -0.315 6.315 27 C -0.075 4.075 28 C -0.225 4.225 29 H 0.082 0.918 30 H 0.135 0.865 31 H 0.156 0.844 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.122 0.878 39 H 0.101 0.899 40 H 0.135 0.865 41 H 0.104 0.896 42 H 0.140 0.860 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.144 0.856 46 H 0.164 0.836 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 19.102 -30.002 3.110 35.703 hybrid contribution -0.173 0.943 0.364 1.025 sum 18.929 -29.060 3.474 34.854 Atomic orbital electron populations 1.70190 1.08006 1.28763 1.49017 1.26623 0.96916 1.02775 0.95908 0.84572 0.77681 0.74461 0.79374 1.18443 1.19524 1.17923 1.21819 0.92479 0.81516 1.53175 0.88279 1.83936 1.35945 1.12582 1.81595 1.19934 0.91652 0.87971 0.94268 1.21225 0.93127 0.99987 1.11949 1.20928 0.99683 0.91137 0.96053 1.19249 0.93336 0.94498 1.07493 1.20582 1.02544 0.96395 0.92043 1.21260 0.76556 0.79780 0.92227 1.90739 1.52663 1.48909 1.53600 1.48252 1.53488 1.25302 1.07736 1.21373 1.01225 0.95157 0.82464 1.22137 1.01044 0.93775 1.00000 1.23219 0.80383 0.83385 0.94793 1.22501 1.02971 0.97922 0.95351 1.21902 1.00316 0.87121 0.91782 1.88892 1.19619 1.31660 1.90649 1.24409 0.99070 0.80696 1.01969 1.24670 0.82428 0.96022 1.03286 1.89291 1.36268 1.17480 1.88446 1.20863 0.93501 0.96915 0.96258 1.20438 0.99888 0.90689 1.11520 0.91849 0.86480 0.84435 0.85289 0.85112 0.90860 0.90336 0.90749 0.89467 0.87840 0.89861 0.86504 0.89604 0.85985 0.90462 0.89112 0.85599 0.83640 0.86995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.50 13.67 21.61 0.30 -58.21 16 2 C -0.03 -1.48 5.49 84.83 0.47 -1.02 16 3 Si 1.02 44.61 29.55 68.60 2.03 46.64 16 4 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 6 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.41 -25.27 9.49 67.92 0.64 -24.63 16 8 H 0.10 5.59 5.20 -2.91 -0.02 5.58 16 9 O -0.23 -14.84 9.76 -22.74 -0.22 -15.06 16 10 C 0.11 5.97 6.65 22.58 0.15 6.12 16 11 C -0.24 -11.43 9.17 22.39 0.21 -11.23 16 12 C -0.06 -2.23 9.69 22.25 0.22 -2.02 16 13 C -0.14 -4.75 4.38 -19.83 -0.09 -4.84 16 14 C -0.08 -1.61 4.17 29.10 0.12 -1.49 16 15 C 0.51 13.49 7.69 87.66 0.67 14.16 16 16 O -0.58 -22.09 15.45 -3.04 -0.05 -22.14 16 17 N -0.61 -12.01 2.97 -818.97 -2.43 -14.44 16 18 C 0.12 2.46 6.21 86.36 0.54 2.99 16 19 C -0.13 -2.26 5.49 30.65 0.17 -2.09 16 20 C 0.26 3.68 1.02 30.59 0.03 3.71 16 21 C -0.15 -1.63 5.44 30.65 0.17 -1.47 16 22 C 0.11 1.26 6.12 86.35 0.53 1.79 16 23 O -0.39 -5.17 9.71 -126.22 -1.23 -6.39 16 24 C 0.01 0.10 8.07 72.64 0.59 0.69 16 25 C 0.01 0.08 7.94 72.64 0.58 0.65 16 26 O -0.39 -5.76 10.98 -126.22 -1.39 -7.15 16 27 C -0.06 -2.08 9.69 22.25 0.22 -1.86 16 28 C -0.21 -9.48 9.99 22.39 0.22 -9.25 16 29 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 30 H 0.12 5.56 5.64 -2.91 -0.02 5.55 16 31 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 32 H 0.13 1.89 7.88 -2.39 -0.02 1.87 16 33 H 0.13 1.85 7.63 -2.39 -0.02 1.83 16 34 H 0.07 1.87 7.00 -2.39 -0.02 1.85 16 35 H 0.08 1.50 7.85 -2.38 -0.02 1.48 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.12 0.78 5.93 -2.39 -0.01 0.77 16 41 H 0.09 0.90 7.85 -2.39 -0.02 0.89 16 42 H 0.12 0.28 8.14 -2.39 -0.02 0.27 16 43 H 0.08 0.50 8.14 -2.39 -0.02 0.49 16 44 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 45 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 46 H 0.15 4.13 8.06 -2.91 -0.02 4.10 16 47 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 Total: -1.00 -86.33 382.71 3.42 -82.91 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.99 Total: 23.61 kcal Atomic # 6 Polarization: -35.21 SS G_CDS: 5.42 Total: -29.78 kcal Atomic # 7 Polarization: -70.51 SS G_CDS: -2.14 Total: -72.64 kcal Atomic # 8 Polarization: -47.86 SS G_CDS: -2.88 Total: -50.74 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -86.33 3.42 -82.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110621899.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.878 kcal (2) G-P(sol) polarization free energy of solvation -86.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds