Wall clock time and date at job start Wed Apr 1 2020 04:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99641 * 2 1 4 4 H 1.48498 * 109.46790 * 239.99909 * 3 2 1 5 5 H 1.48498 * 109.47027 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46936 * 119.99838 * 3 2 1 7 7 C 1.37876 * 120.00318 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99994 * 166.30677 * 7 2 1 9 9 C 1.50706 * 119.99667 * 346.02098 * 7 2 1 10 10 N 1.46497 * 109.47070 * 54.15774 * 9 7 2 11 11 C 1.34778 * 120.00411 * 252.60098 * 10 9 7 12 12 O 1.21292 * 119.99984 * 185.02708 * 11 10 9 13 13 C 1.50704 * 119.99597 * 5.01889 * 11 10 9 14 14 O 1.42897 * 109.46889 * 187.77420 * 13 11 10 15 15 C 1.42894 * 114.00017 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47243 * 180.02562 * 15 14 13 17 17 C 1.53004 * 117.49667 * 243.62548 * 16 15 14 18 18 C 1.52999 * 117.49794 * 175.00419 * 16 15 14 19 19 C 1.40101 * 119.99638 * 72.60220 * 10 9 7 20 20 C 1.38841 * 120.02368 * 9.30530 * 19 10 9 21 21 C 1.38123 * 120.04182 * 179.81329 * 20 19 10 22 22 C 1.38713 * 120.15974 * 0.55359 * 21 20 19 23 23 C 1.38996 * 119.93166 * 359.62343 * 22 21 20 24 24 C 1.38644 * 119.88466 * 0.11132 * 23 22 21 25 25 O 1.36121 * 120.77971 * 180.26799 * 23 22 21 26 26 C 1.43164 * 116.73367 * 342.79087 * 25 23 22 27 27 C 1.53473 * 108.24642 * 46.19312 * 26 25 23 28 28 O 1.36206 * 119.32070 * 179.51745 * 22 21 20 29 29 H 0.96999 * 119.99924 * 5.02602 * 1 2 3 30 30 H 1.09001 * 109.46519 * 174.15930 * 9 7 2 31 31 H 1.09001 * 109.47156 * 294.15582 * 9 7 2 32 32 H 1.08997 * 109.46939 * 307.77638 * 13 11 10 33 33 H 1.09003 * 109.46865 * 67.77959 * 13 11 10 34 34 H 1.09000 * 109.47589 * 300.00552 * 15 14 13 35 35 H 1.09003 * 109.47089 * 60.00145 * 15 14 13 36 36 H 1.08991 * 115.55023 * 29.33514 * 16 15 14 37 37 H 1.09001 * 117.50221 * 359.97438 * 17 16 15 38 38 H 1.09000 * 117.49658 * 145.02430 * 17 16 15 39 39 H 1.09000 * 117.49860 * 214.97977 * 18 16 15 40 40 H 1.09007 * 117.50127 * 0.02562 * 18 16 15 41 41 H 1.08007 * 119.97807 * 0.07094 * 20 19 10 42 42 H 1.08002 * 119.92553 * 180.28367 * 21 20 19 43 43 H 1.08003 * 119.98807 * 179.97438 * 24 23 22 44 44 H 1.09001 * 109.70841 * 165.87706 * 26 25 23 45 45 H 1.08998 * 109.70638 * 286.50563 * 26 25 23 46 46 H 1.09002 * 109.70895 * 59.91707 * 27 26 25 47 47 H 1.08996 * 109.71444 * 180.55265 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0616 -1.2071 -0.2219 9 6 1.2846 -2.4800 0.3142 10 7 0.1270 -2.6211 -0.5725 11 6 -1.1188 -2.4534 -0.0863 12 8 -2.0799 -2.6593 -0.7970 13 6 -1.3175 -2.0103 1.3403 14 8 -2.7059 -2.0793 1.6715 15 6 -3.0047 -1.6785 3.0101 16 6 -4.5111 -1.7924 3.2523 17 6 -5.2776 -0.5028 3.5533 18 6 -5.0216 -1.5187 4.6685 19 6 0.3150 -2.9303 -1.9260 20 6 1.5734 -3.2925 -2.3875 21 6 1.7584 -3.6012 -3.7210 22 6 0.6913 -3.5395 -4.6052 23 6 -0.5689 -3.1737 -4.1469 24 6 -0.7552 -2.8693 -2.8072 25 8 -1.6292 -3.1128 -4.9983 26 6 -1.3296 -3.0628 -6.3973 27 6 -0.2685 -4.1294 -6.7000 28 8 0.8952 -3.8379 -5.9184 29 1 -0.4850 0.8368 -0.0736 30 1 1.9615 -3.3212 0.1648 31 1 0.9483 -2.4638 1.3509 32 1 -0.7524 -2.6632 2.0055 33 1 -0.9673 -0.9844 1.4542 34 1 -2.4747 -2.3247 3.7098 35 1 -2.6894 -0.6458 3.1592 36 1 -5.0239 -2.5593 2.6720 37 1 -4.7087 0.4266 3.5792 38 1 -6.2951 -0.4212 3.1709 39 1 -5.8705 -2.1053 5.0196 40 1 -4.2842 -1.2571 5.4275 41 1 2.4073 -3.3368 -1.7026 42 1 2.7371 -3.8871 -4.0772 43 1 -1.7336 -2.5845 -2.4493 44 1 -2.2316 -3.2677 -6.9740 45 1 -0.9436 -2.0767 -6.6555 46 1 -0.6518 -5.1149 -6.4353 47 1 -0.0149 -4.1055 -7.7598 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112287389.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:09 Heat of formation + Delta-G solvation = -71.254973 kcal Electronic energy + Delta-G solvation = -31312.260618 eV Core-core repulsion = 27042.198145 eV Total energy + Delta-G solvation = -4270.062473 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.70954 -39.47928 -37.98441 -36.82048 -36.68478 -35.77631 -34.86791 -32.41379 -30.48968 -29.96421 -28.51061 -27.74070 -27.09472 -25.49905 -24.05036 -23.10256 -22.36059 -22.16623 -20.67253 -20.36501 -18.97864 -17.94453 -17.28434 -17.13139 -16.46544 -16.24110 -15.81139 -15.42382 -15.14155 -15.03078 -14.93595 -14.63279 -14.44211 -14.06657 -13.92971 -13.79216 -13.34362 -13.31600 -12.68510 -12.62509 -12.55304 -12.15358 -12.06713 -11.82822 -11.53167 -11.51792 -11.27992 -11.10834 -10.96205 -10.79236 -10.73398 -10.64449 -10.40656 -10.13404 -10.11660 -9.98297 -9.90400 -9.15990 -8.82011 -8.50375 -8.24044 -7.71562 -6.71147 -6.26063 -4.50376 2.03092 2.09561 3.13704 3.22306 3.23488 3.44305 3.49978 3.68544 3.77369 3.93805 4.16914 4.43076 4.54604 4.66729 4.89494 4.95795 4.97208 5.00755 5.07974 5.26514 5.27377 5.41916 5.49842 5.59911 5.62683 5.65390 5.74253 5.84298 5.89008 5.89345 5.96252 6.00657 6.11324 6.21480 6.31050 6.41070 6.49953 6.71268 6.75185 6.75931 6.91076 7.09160 7.22242 7.46399 7.57160 7.68504 7.77816 7.87758 8.15103 8.46169 8.62752 9.19027 9.31831 10.62944 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009406 B = 0.003676 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2976.047926 B = 7614.482610 C = 9538.818027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.077 3.923 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.069 0.931 9 C 0.215 3.785 10 N -0.513 5.513 11 C 0.558 3.442 12 O -0.543 6.543 13 C 0.045 3.955 14 O -0.372 6.372 15 C 0.095 3.905 16 C -0.146 4.146 17 C -0.178 4.178 18 C -0.178 4.178 19 C 0.211 3.789 20 C -0.146 4.146 21 C -0.095 4.095 22 C -0.006 4.006 23 C 0.066 3.934 24 C -0.167 4.167 25 O -0.308 6.308 26 C 0.022 3.978 27 C 0.024 3.976 28 O -0.315 6.315 29 H 0.272 0.728 30 H 0.038 0.962 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.132 0.868 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.136 0.864 42 H 0.126 0.874 43 H 0.183 0.817 44 H 0.113 0.887 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.992 -4.550 -0.468 5.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.128 4.128 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.579 4.579 8 H 0.087 0.913 9 C 0.096 3.904 10 N -0.232 5.232 11 C 0.350 3.650 12 O -0.423 6.423 13 C -0.033 4.033 14 O -0.290 6.290 15 C 0.018 3.982 16 C -0.165 4.165 17 C -0.215 4.215 18 C -0.215 4.215 19 C 0.113 3.887 20 C -0.167 4.167 21 C -0.114 4.114 22 C -0.051 4.051 23 C 0.021 3.979 24 C -0.188 4.188 25 O -0.222 6.222 26 C -0.055 4.055 27 C -0.052 4.052 28 O -0.231 6.231 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.149 0.851 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.153 0.847 42 H 0.144 0.856 43 H 0.199 0.801 44 H 0.131 0.869 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.806 -4.574 -0.796 6.004 hybrid contribution 0.725 1.242 -0.190 1.451 sum -3.081 -3.332 -0.985 4.644 Atomic orbital electron populations 1.69670 1.06158 1.28196 1.47130 1.25040 0.94785 0.99745 0.93193 0.86513 0.79689 0.82175 0.78937 1.20000 1.21106 1.19865 1.21380 0.96102 0.90809 1.49639 0.91255 1.19748 0.84050 0.96491 0.90081 1.46152 1.07817 1.62696 1.06567 1.19815 0.81964 0.74326 0.88909 1.90311 1.41230 1.51474 1.59267 1.22997 0.81730 1.05327 0.93251 1.87881 1.24739 1.88084 1.28318 1.21892 0.93021 0.98579 0.84676 1.22135 0.95095 1.00599 0.98625 1.23045 1.01624 0.94016 1.02796 1.22956 1.03270 1.03641 0.91652 1.17463 0.92756 0.94231 0.84264 1.20592 0.96675 1.04564 0.94851 1.20018 0.97111 1.02916 0.91377 1.18729 0.94272 1.08123 0.83973 1.18753 0.85714 1.02441 0.91010 1.21653 1.03682 1.04367 0.89052 1.86300 1.30356 1.90075 1.15504 1.23505 1.00474 0.99603 0.81872 1.23451 0.86840 0.98357 0.96595 1.86239 1.31870 1.86167 1.18798 0.91743 0.94389 0.93555 0.92904 0.85143 0.93491 0.93344 0.86906 0.88676 0.88825 0.88697 0.88818 0.84667 0.85606 0.80105 0.86929 0.91082 0.91238 0.87056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.91 8.04 55.43 0.45 -21.47 16 2 C 0.08 1.87 5.41 -17.82 -0.10 1.78 16 3 Si 0.90 19.41 29.56 -169.99 -5.03 14.38 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.54 -12.75 8.69 -34.44 -0.30 -13.05 16 8 H 0.07 1.61 7.85 -52.49 -0.41 1.20 16 9 C 0.21 4.63 5.15 -5.19 -0.03 4.60 16 10 N -0.51 -11.87 2.14 -114.72 -0.25 -12.12 16 11 C 0.56 13.44 6.12 -10.98 -0.07 13.37 16 12 O -0.54 -14.33 13.05 -14.24 -0.19 -14.51 16 13 C 0.05 0.96 4.86 36.01 0.18 1.14 16 14 O -0.37 -7.69 9.89 -55.02 -0.54 -8.23 16 15 C 0.10 1.52 6.22 37.16 0.23 1.75 16 16 C -0.15 -2.02 6.06 -90.62 -0.55 -2.57 16 17 C -0.18 -2.13 10.18 -26.73 -0.27 -2.40 16 18 C -0.18 -1.91 10.25 -26.73 -0.27 -2.19 16 19 C 0.21 4.85 6.28 -83.66 -0.53 4.33 16 20 C -0.15 -2.98 8.97 -39.40 -0.35 -3.33 16 21 C -0.09 -1.80 9.95 -39.45 -0.39 -2.19 16 22 C -0.01 -0.12 6.49 -39.12 -0.25 -0.38 16 23 C 0.07 1.40 6.49 -39.15 -0.25 1.15 16 24 C -0.17 -3.95 8.87 -39.24 -0.35 -4.30 16 25 O -0.31 -5.93 10.42 -32.91 -0.34 -6.28 16 26 C 0.02 0.29 7.26 37.40 0.27 0.57 16 27 C 0.02 0.30 7.26 37.40 0.27 0.58 16 28 O -0.32 -5.41 10.42 -33.18 -0.35 -5.76 16 29 H 0.27 6.80 8.32 -40.82 -0.34 6.46 16 30 H 0.04 0.74 6.86 -51.93 -0.36 0.38 16 31 H 0.05 0.96 5.73 -51.93 -0.30 0.66 16 32 H 0.05 1.00 6.91 -51.93 -0.36 0.64 16 33 H 0.13 2.94 5.50 -51.93 -0.29 2.65 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.75 7.88 -51.93 -0.41 0.34 16 36 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 37 H 0.09 1.13 8.03 -51.93 -0.42 0.71 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.14 2.58 6.20 -52.48 -0.33 2.26 16 42 H 0.13 2.03 8.06 -52.49 -0.42 1.61 16 43 H 0.18 4.73 4.78 -54.85 -0.26 4.47 16 44 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 378.74 15.07 5.71 5.71 Total: -1.00 -29.91 378.74 -9.79 -39.69 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -6.49 Total: 9.75 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -2.76 Total: -1.17 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 0.20 Total: -33.59 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -1.42 Total: -34.78 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.91 -9.79 -39.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112287389.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.560 kcal (2) G-P(sol) polarization free energy of solvation -29.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds