Wall clock time and date at job start Wed Apr 1 2020 04:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99641 * 2 1 4 4 H 1.48498 * 109.46790 * 239.99909 * 3 2 1 5 5 H 1.48498 * 109.47027 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46936 * 119.99838 * 3 2 1 7 7 C 1.37876 * 120.00318 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99994 * 166.30677 * 7 2 1 9 9 C 1.50706 * 119.99667 * 346.02098 * 7 2 1 10 10 N 1.46497 * 109.47070 * 54.15774 * 9 7 2 11 11 C 1.34778 * 120.00411 * 252.60098 * 10 9 7 12 12 O 1.21292 * 119.99984 * 185.02708 * 11 10 9 13 13 C 1.50704 * 119.99597 * 5.01889 * 11 10 9 14 14 O 1.42897 * 109.46889 * 187.77420 * 13 11 10 15 15 C 1.42894 * 114.00017 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47243 * 180.02562 * 15 14 13 17 17 C 1.53004 * 117.49667 * 243.62548 * 16 15 14 18 18 C 1.52999 * 117.49794 * 175.00419 * 16 15 14 19 19 C 1.40101 * 119.99638 * 72.60220 * 10 9 7 20 20 C 1.38841 * 120.02368 * 9.30530 * 19 10 9 21 21 C 1.38123 * 120.04182 * 179.81329 * 20 19 10 22 22 C 1.38713 * 120.15974 * 0.55359 * 21 20 19 23 23 C 1.38996 * 119.93166 * 359.62343 * 22 21 20 24 24 C 1.38644 * 119.88466 * 0.11132 * 23 22 21 25 25 O 1.36121 * 120.77971 * 180.26799 * 23 22 21 26 26 C 1.43164 * 116.73367 * 342.79087 * 25 23 22 27 27 C 1.53473 * 108.24642 * 46.19312 * 26 25 23 28 28 O 1.36206 * 119.32070 * 179.51745 * 22 21 20 29 29 H 0.96999 * 119.99924 * 5.02602 * 1 2 3 30 30 H 1.09001 * 109.46519 * 174.15930 * 9 7 2 31 31 H 1.09001 * 109.47156 * 294.15582 * 9 7 2 32 32 H 1.08997 * 109.46939 * 307.77638 * 13 11 10 33 33 H 1.09003 * 109.46865 * 67.77959 * 13 11 10 34 34 H 1.09000 * 109.47589 * 300.00552 * 15 14 13 35 35 H 1.09003 * 109.47089 * 60.00145 * 15 14 13 36 36 H 1.08991 * 115.55023 * 29.33514 * 16 15 14 37 37 H 1.09001 * 117.50221 * 359.97438 * 17 16 15 38 38 H 1.09000 * 117.49658 * 145.02430 * 17 16 15 39 39 H 1.09000 * 117.49860 * 214.97977 * 18 16 15 40 40 H 1.09007 * 117.50127 * 0.02562 * 18 16 15 41 41 H 1.08007 * 119.97807 * 0.07094 * 20 19 10 42 42 H 1.08002 * 119.92553 * 180.28367 * 21 20 19 43 43 H 1.08003 * 119.98807 * 179.97438 * 24 23 22 44 44 H 1.09001 * 109.70841 * 165.87706 * 26 25 23 45 45 H 1.08998 * 109.70638 * 286.50563 * 26 25 23 46 46 H 1.09002 * 109.70895 * 59.91707 * 27 26 25 47 47 H 1.08996 * 109.71444 * 180.55265 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0616 -1.2071 -0.2219 9 6 1.2846 -2.4800 0.3142 10 7 0.1270 -2.6211 -0.5725 11 6 -1.1188 -2.4534 -0.0863 12 8 -2.0799 -2.6593 -0.7970 13 6 -1.3175 -2.0103 1.3403 14 8 -2.7059 -2.0793 1.6715 15 6 -3.0047 -1.6785 3.0101 16 6 -4.5111 -1.7924 3.2523 17 6 -5.2776 -0.5028 3.5533 18 6 -5.0216 -1.5187 4.6685 19 6 0.3150 -2.9303 -1.9260 20 6 1.5734 -3.2925 -2.3875 21 6 1.7584 -3.6012 -3.7210 22 6 0.6913 -3.5395 -4.6052 23 6 -0.5689 -3.1737 -4.1469 24 6 -0.7552 -2.8693 -2.8072 25 8 -1.6292 -3.1128 -4.9983 26 6 -1.3296 -3.0628 -6.3973 27 6 -0.2685 -4.1294 -6.7000 28 8 0.8952 -3.8379 -5.9184 29 1 -0.4850 0.8368 -0.0736 30 1 1.9615 -3.3212 0.1648 31 1 0.9483 -2.4638 1.3509 32 1 -0.7524 -2.6632 2.0055 33 1 -0.9673 -0.9844 1.4542 34 1 -2.4747 -2.3247 3.7098 35 1 -2.6894 -0.6458 3.1592 36 1 -5.0239 -2.5593 2.6720 37 1 -4.7087 0.4266 3.5792 38 1 -6.2951 -0.4212 3.1709 39 1 -5.8705 -2.1053 5.0196 40 1 -4.2842 -1.2571 5.4275 41 1 2.4073 -3.3368 -1.7026 42 1 2.7371 -3.8871 -4.0772 43 1 -1.7336 -2.5845 -2.4493 44 1 -2.2316 -3.2677 -6.9740 45 1 -0.9436 -2.0767 -6.6555 46 1 -0.6518 -5.1149 -6.4353 47 1 -0.0149 -4.1055 -7.7598 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112287389.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:08 Heat of formation + Delta-G solvation = -87.185281 kcal Electronic energy + Delta-G solvation = -31312.951408 eV Core-core repulsion = 27042.198145 eV Total energy + Delta-G solvation = -4270.753263 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.16773 -41.14948 -39.28743 -38.31093 -38.06802 -37.15680 -36.60986 -34.20753 -31.81630 -31.56181 -30.03956 -29.40534 -28.53345 -26.93451 -25.49680 -24.75749 -23.79770 -23.25238 -22.02040 -21.59854 -20.55961 -19.47705 -18.87116 -18.69647 -17.84038 -17.82253 -17.35755 -16.87215 -16.67633 -16.64858 -16.34507 -16.05328 -15.77348 -15.54321 -15.31193 -15.14569 -14.85807 -14.67906 -14.37027 -14.17023 -13.98890 -13.75456 -13.62038 -13.29846 -13.08437 -12.86719 -12.82138 -12.62401 -12.38494 -12.26393 -12.02311 -11.93932 -11.77834 -11.74517 -11.45525 -11.36356 -11.21899 -10.75076 -10.41928 -10.16359 -10.03891 -9.33102 -8.41143 -8.03801 -6.37495 0.42271 0.47100 1.41907 1.46572 1.51852 1.87041 2.02335 2.25189 2.38435 2.42324 2.78072 2.98253 3.01336 3.24788 3.42987 3.79972 3.87528 3.95056 3.98883 4.02489 4.13622 4.19195 4.23904 4.32651 4.35815 4.41154 4.54628 4.57991 4.59574 4.63199 4.67952 4.75549 4.76177 4.95252 4.99299 5.00705 5.10249 5.14100 5.22060 5.24985 5.29712 5.49751 5.58901 5.71971 5.97833 6.03164 6.15008 6.31152 6.58681 6.64433 6.86908 7.33739 7.52115 8.76214 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009406 B = 0.003676 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2976.047926 B = 7614.482610 C = 9538.818027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.037 3.963 3 Si 0.951 3.049 4 H -0.281 1.281 5 H -0.295 1.295 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.073 0.927 9 C 0.210 3.790 10 N -0.513 5.513 11 C 0.545 3.455 12 O -0.579 6.579 13 C 0.056 3.944 14 O -0.399 6.399 15 C 0.090 3.910 16 C -0.175 4.175 17 C -0.182 4.182 18 C -0.148 4.148 19 C 0.183 3.817 20 C -0.146 4.146 21 C -0.089 4.089 22 C 0.000 4.000 23 C 0.059 3.941 24 C -0.198 4.198 25 O -0.332 6.332 26 C 0.010 3.990 27 C 0.019 3.981 28 O -0.320 6.320 29 H 0.263 0.737 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.149 0.851 42 H 0.160 0.840 43 H 0.149 0.851 44 H 0.153 0.847 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.737 -5.109 -0.976 5.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.165 4.165 3 Si 0.778 3.222 4 H -0.206 1.206 5 H -0.221 1.221 6 H -0.186 1.186 7 C -0.584 4.584 8 H 0.091 0.909 9 C 0.092 3.908 10 N -0.232 5.232 11 C 0.337 3.663 12 O -0.462 6.462 13 C -0.022 4.022 14 O -0.318 6.318 15 C 0.014 3.986 16 C -0.194 4.194 17 C -0.219 4.219 18 C -0.185 4.185 19 C 0.086 3.914 20 C -0.167 4.167 21 C -0.108 4.108 22 C -0.046 4.046 23 C 0.014 3.986 24 C -0.219 4.219 25 O -0.248 6.248 26 C -0.064 4.064 27 C -0.056 4.056 28 O -0.235 6.235 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.136 0.864 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.120 0.880 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.167 0.833 42 H 0.178 0.822 43 H 0.166 0.834 44 H 0.170 0.830 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.524 -5.142 -1.308 5.876 hybrid contribution 0.287 1.367 -0.209 1.412 sum -2.237 -3.776 -1.516 4.643 Atomic orbital electron populations 1.69838 1.07068 1.27837 1.48258 1.25634 0.95262 1.02178 0.93420 0.85711 0.78391 0.79183 0.78901 1.20644 1.22110 1.18558 1.21627 0.96309 0.91491 1.48925 0.90877 1.19883 0.83945 0.96703 0.90237 1.46156 1.07765 1.62341 1.06954 1.20394 0.81972 0.74015 0.89907 1.90305 1.42348 1.53147 1.60363 1.22782 0.82554 1.04775 0.92086 1.87858 1.24346 1.88452 1.31187 1.22147 0.94784 0.98832 0.82817 1.22097 0.93834 1.01801 1.01629 1.23145 1.01716 0.93434 1.03584 1.23079 1.03443 1.01807 0.90147 1.17764 0.93740 0.95623 0.84256 1.20765 0.95810 1.04181 0.95914 1.20405 0.98400 1.01321 0.90637 1.18819 0.93464 1.06901 0.85372 1.18771 0.86996 1.02225 0.90641 1.21455 1.02778 1.06861 0.90828 1.86260 1.30499 1.89913 1.18081 1.23981 1.02990 1.00241 0.79204 1.23872 0.85319 0.98091 0.98295 1.86229 1.34031 1.85807 1.17448 0.92732 0.92149 0.92811 0.90700 0.86365 0.91733 0.93348 0.88280 0.88813 0.87950 0.86718 0.87431 0.83322 0.82205 0.83380 0.82985 0.90961 0.90551 0.82383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.05 8.04 21.45 0.17 -45.88 16 2 C 0.04 1.82 5.41 84.65 0.46 2.28 16 3 Si 0.95 39.94 29.56 68.60 2.03 41.96 16 4 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 7 C -0.55 -25.45 8.69 25.60 0.22 -25.23 16 8 H 0.07 3.30 7.85 -2.91 -0.02 3.28 16 9 C 0.21 9.03 5.15 85.64 0.44 9.48 16 10 N -0.51 -24.42 2.14 -635.25 -1.36 -25.78 16 11 C 0.54 27.50 6.12 87.66 0.54 28.04 16 12 O -0.58 -32.72 13.05 15.85 0.21 -32.52 16 13 C 0.06 2.48 4.86 71.24 0.35 2.83 16 14 O -0.40 -17.23 9.89 -130.06 -1.29 -18.52 16 15 C 0.09 2.92 6.22 71.98 0.45 3.36 16 16 C -0.18 -4.87 6.06 -10.79 -0.07 -4.93 16 17 C -0.18 -4.25 10.18 30.60 0.31 -3.94 16 18 C -0.15 -2.90 10.25 30.59 0.31 -2.59 16 19 C 0.18 8.67 6.28 38.09 0.24 8.91 16 20 C -0.15 -5.87 8.97 22.39 0.20 -5.67 16 21 C -0.09 -3.20 9.95 22.36 0.22 -2.98 16 22 C 0.00 -0.01 6.49 22.57 0.15 0.14 16 23 C 0.06 2.56 6.49 22.55 0.15 2.70 16 24 C -0.20 -9.87 8.87 22.49 0.20 -9.67 16 25 O -0.33 -12.93 10.42 -82.70 -0.86 -13.79 16 26 C 0.01 0.26 7.26 72.14 0.52 0.79 16 27 C 0.02 0.43 7.26 72.14 0.52 0.95 16 28 O -0.32 -10.10 10.42 -83.67 -0.87 -10.97 16 29 H 0.26 13.68 8.32 -92.71 -0.77 12.91 16 30 H 0.06 2.28 6.86 -2.39 -0.02 2.26 16 31 H 0.05 2.21 5.73 -2.39 -0.01 2.19 16 32 H 0.08 2.87 6.91 -2.39 -0.02 2.85 16 33 H 0.12 5.53 5.50 -2.39 -0.01 5.52 16 34 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.05 1.53 7.88 -2.39 -0.02 1.51 16 36 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 37 H 0.09 2.20 8.03 -2.39 -0.02 2.18 16 38 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 41 H 0.15 5.45 6.20 -2.91 -0.02 5.43 16 42 H 0.16 4.61 8.06 -2.91 -0.02 4.59 16 43 H 0.15 8.40 4.78 -40.35 -0.19 8.21 16 44 H 0.15 2.56 8.14 -2.39 -0.02 2.54 16 45 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.16 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -68.51 378.74 4.06 -64.44 By element: Atomic # 1 Polarization: 35.75 SS G_CDS: 0.82 Total: 36.57 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 5.21 Total: 4.48 kcal Atomic # 7 Polarization: -70.47 SS G_CDS: -1.19 Total: -71.65 kcal Atomic # 8 Polarization: -72.99 SS G_CDS: -2.81 Total: -75.80 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.96 kcal Total: -68.51 4.06 -64.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112287389.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.743 kcal (2) G-P(sol) polarization free energy of solvation -68.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds