Wall clock time and date at job start Wed Apr 1 2020 04:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86805 * 119.99595 * 2 1 4 4 H 1.48500 * 109.47167 * 269.99854 * 3 2 1 5 5 H 1.48502 * 109.46906 * 29.99997 * 3 2 1 6 6 H 1.48503 * 109.46752 * 149.99775 * 3 2 1 7 7 C 1.37874 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99931 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00008 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.47246 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99521 * 90.00270 * 10 9 7 12 12 O 1.21289 * 120.00156 * 355.63137 * 11 10 9 13 13 C 1.50697 * 119.99830 * 175.63315 * 11 10 9 14 14 C 1.53003 * 109.47366 * 185.63536 * 13 11 10 15 15 C 1.50697 * 109.47366 * 180.02562 * 14 13 11 16 16 O 1.20828 * 119.99966 * 0.02562 * 15 14 13 17 17 O 1.34226 * 120.00105 * 180.02562 * 15 14 13 18 18 C 1.45205 * 116.99921 * 180.02562 * 17 15 14 19 19 H 1.08997 * 110.75605 * 32.01635 * 18 17 15 20 20 C 1.55309 * 110.84668 * 155.71530 * 18 17 15 21 21 C 1.54940 * 100.94262 * 152.32187 * 20 18 17 22 22 O 1.43648 * 105.13813 * 323.55293 * 21 20 18 23 23 C 1.43242 * 109.96782 * 24.42844 * 22 21 20 24 24 C 1.39921 * 120.00117 * 270.00506 * 10 9 7 25 25 C 1.38868 * 120.06955 * 111.85607 * 24 10 9 26 26 C 1.38120 * 119.92873 * 179.76542 * 25 24 10 27 27 C 1.38285 * 120.06524 * 0.48331 * 26 25 24 28 28 C 1.38282 * 120.14512 * 359.76631 * 27 26 25 29 29 C 1.38110 * 120.06687 * 0.02562 * 28 27 26 30 30 H 0.97000 * 120.00284 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.46817 * 60.00276 * 9 7 2 32 32 H 1.08997 * 109.47501 * 300.00042 * 9 7 2 33 33 H 1.09003 * 109.46980 * 305.63358 * 13 11 10 34 34 H 1.08999 * 109.47278 * 65.63494 * 13 11 10 35 35 H 1.09003 * 109.46926 * 299.99855 * 14 13 11 36 36 H 1.08999 * 109.46956 * 59.99761 * 14 13 11 37 37 H 1.09008 * 111.12359 * 270.23644 * 20 18 17 38 38 H 1.09000 * 111.12804 * 34.40181 * 20 18 17 39 39 H 1.09001 * 110.30919 * 204.63706 * 21 20 18 40 40 H 1.09000 * 110.39819 * 82.51047 * 21 20 18 41 41 H 1.09004 * 109.82895 * 238.77477 * 23 22 21 42 42 H 1.09000 * 109.90404 * 117.85078 * 23 22 21 43 43 H 1.08003 * 120.03650 * 359.96968 * 25 24 10 44 44 H 1.07993 * 119.96832 * 180.20536 * 26 25 24 45 45 H 1.08003 * 119.92641 * 179.74552 * 27 26 25 46 46 H 1.08001 * 119.96703 * 179.97438 * 28 27 26 47 47 H 1.08002 * 120.03073 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 7 2.2033 -3.6126 0.0015 11 6 2.6420 -4.1243 1.1686 12 8 2.3112 -3.6129 2.2174 13 6 3.5436 -5.3317 1.1704 14 6 3.7791 -5.7903 2.6110 15 6 4.6813 -6.9974 2.6128 16 8 5.0940 -7.4448 1.5690 17 8 5.0263 -7.5756 3.7740 18 6 5.8986 -8.7341 3.6999 19 1 6.5777 -8.6527 2.8512 20 6 6.6845 -8.9200 5.0265 21 6 6.9198 -10.4514 5.0169 22 8 5.7256 -11.0108 4.4472 23 6 5.0752 -10.0376 3.6215 24 6 2.6571 -4.1449 -1.2104 25 6 3.9825 -3.9791 -1.5903 26 6 4.4285 -4.5099 -2.7849 27 6 3.5543 -5.1971 -3.6069 28 6 2.2327 -5.3594 -3.2339 29 6 1.7816 -4.8348 -2.0386 30 1 -0.4850 0.8400 -0.0004 31 1 0.6243 -2.5574 -0.8881 32 1 0.6249 -2.5563 0.8919 33 1 3.0740 -6.1367 0.6050 34 1 4.4976 -5.0735 0.7108 35 1 4.2488 -4.9853 3.1763 36 1 2.8251 -6.0485 3.0706 37 1 7.6295 -8.3772 5.0025 38 1 6.0831 -8.6203 5.8847 39 1 7.0621 -10.8187 6.0332 40 1 7.7845 -10.6991 4.4012 41 1 4.0640 -9.8589 3.9873 42 1 5.0383 -10.3905 2.5909 43 1 4.6646 -3.4386 -0.9507 44 1 5.4599 -4.3842 -3.0793 45 1 3.9045 -5.6077 -4.5425 46 1 1.5523 -5.8963 -3.8783 47 1 0.7491 -4.9616 -1.7481 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113674209.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:05 Heat of formation + Delta-G solvation = -136.897576 kcal Electronic energy + Delta-G solvation = -30117.236969 eV Core-core repulsion = 25844.328019 eV Total energy + Delta-G solvation = -4272.908950 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.01160 -39.97594 -39.31651 -38.16374 -36.63063 -34.95612 -33.12757 -32.58366 -31.92333 -30.68115 -29.47836 -29.37027 -27.68021 -25.76166 -23.38802 -22.86418 -22.51546 -22.16558 -21.78267 -20.69488 -19.00926 -18.28902 -17.31951 -17.22848 -16.72968 -16.43007 -16.25247 -16.03865 -15.52809 -15.48178 -15.12255 -14.86025 -14.42340 -14.25751 -14.16416 -13.78344 -13.30551 -13.18383 -13.12233 -13.07394 -12.73642 -12.57485 -12.32439 -12.17914 -12.03332 -11.97842 -11.49566 -11.32942 -11.27958 -11.18120 -10.97710 -10.87787 -10.85559 -10.66752 -10.59282 -10.20227 -10.01284 -9.76540 -9.38684 -8.68042 -8.59140 -8.46977 -7.72323 -6.08895 -4.13241 1.56665 1.65573 2.00781 2.25632 3.18717 3.28508 3.34698 3.38594 3.40066 3.73053 3.87069 4.03728 4.27099 4.37270 4.41772 4.48349 4.66625 4.73439 4.89714 5.02432 5.04131 5.17952 5.18114 5.20318 5.22358 5.26401 5.29614 5.36132 5.39972 5.50681 5.58632 5.68601 5.80104 5.83055 5.93460 6.05084 6.19627 6.26287 6.44028 6.60356 6.73653 6.79101 6.94211 7.18323 7.30557 7.42763 7.53485 7.86186 8.14874 8.27056 8.77470 8.92906 9.51223 10.99526 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012109 B = 0.002552 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.789055 B =10969.947608 C =12405.204143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.248 3.752 10 N -0.560 5.560 11 C 0.514 3.486 12 O -0.527 6.527 13 C -0.130 4.130 14 C -0.097 4.097 15 C 0.464 3.536 16 O -0.504 6.504 17 O -0.342 6.342 18 C 0.054 3.946 19 H 0.103 0.897 20 C -0.152 4.152 21 C 0.052 3.948 22 O -0.376 6.376 23 C 0.036 3.964 24 C 0.162 3.838 25 C -0.122 4.122 26 C -0.109 4.109 27 C -0.133 4.133 28 C -0.110 4.110 29 C -0.124 4.124 30 H 0.264 0.736 31 H 0.036 0.964 32 H 0.048 0.952 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.121 0.879 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.013 -18.862 2.685 22.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.563 4.563 8 H 0.076 0.924 9 C 0.131 3.869 10 N -0.287 5.287 11 C 0.302 3.698 12 O -0.404 6.404 13 C -0.170 4.170 14 C -0.135 4.135 15 C 0.307 3.693 16 O -0.391 6.391 17 O -0.259 6.259 18 C -0.002 4.002 19 H 0.121 0.879 20 C -0.190 4.190 21 C -0.025 4.025 22 O -0.296 6.296 23 C -0.041 4.041 24 C 0.070 3.930 25 C -0.141 4.141 26 C -0.128 4.128 27 C -0.151 4.151 28 C -0.129 4.129 29 C -0.144 4.144 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.085 0.915 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.139 0.861 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.700 -18.793 3.021 22.343 hybrid contribution 0.583 1.267 -0.336 1.435 sum 12.283 -17.526 2.685 21.570 Atomic orbital electron populations 1.69926 1.05972 1.27114 1.50328 1.24913 0.94899 0.99216 0.94987 0.86481 0.79846 0.82980 0.78049 1.20610 1.21036 1.19850 1.21343 0.93352 0.90404 1.51200 0.92396 1.19447 0.87074 0.81699 0.98724 1.45948 1.45701 1.34644 1.02448 1.20198 0.81191 0.84587 0.83831 1.90703 1.57466 1.61675 1.30546 1.21517 1.01739 0.97740 0.96042 1.21138 0.99764 0.93211 0.99390 1.24040 0.79336 0.84444 0.81451 1.90677 1.52300 1.63341 1.32831 1.86619 1.61792 1.42292 1.35208 1.24303 0.91693 0.83942 1.00253 0.87903 1.23370 1.01302 0.97099 0.97227 1.23371 0.88294 0.91197 0.99601 1.88462 1.38707 1.37115 1.65296 1.23521 0.97194 0.87300 0.96063 1.17712 0.92543 0.94664 0.88110 1.21348 0.95729 0.99844 0.97205 1.20968 0.99534 0.98064 0.94206 1.21062 0.93823 1.00541 0.99704 1.20962 0.95806 0.99967 0.96124 1.21301 1.00023 0.97919 0.95161 0.92648 0.94642 0.93447 0.88532 0.88226 0.86461 0.86726 0.88722 0.88585 0.88779 0.91538 0.89946 0.90133 0.85981 0.86156 0.86400 0.86102 0.85791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.71 9.39 -34.44 -0.32 -15.04 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.25 6.38 5.08 -5.19 -0.03 6.36 16 10 N -0.56 -11.77 2.50 -114.74 -0.29 -12.06 16 11 C 0.51 10.18 7.54 -10.99 -0.08 10.09 16 12 O -0.53 -12.25 15.61 5.55 0.09 -12.16 16 13 C -0.13 -1.93 3.67 -27.88 -0.10 -2.03 16 14 C -0.10 -1.24 5.12 -27.88 -0.14 -1.38 16 15 C 0.46 5.74 7.96 36.00 0.29 6.03 16 16 O -0.50 -7.20 15.27 -18.75 -0.29 -7.49 16 17 O -0.34 -3.80 9.97 -39.25 -0.39 -4.19 16 18 C 0.05 0.50 3.27 -24.78 -0.08 0.42 16 19 H 0.10 0.98 7.31 -51.93 -0.38 0.60 16 20 C -0.15 -1.04 6.90 -24.48 -0.17 -1.21 16 21 C 0.05 0.34 7.78 38.18 0.30 0.64 16 22 O -0.38 -3.74 11.36 -35.23 -0.40 -4.14 16 23 C 0.04 0.34 7.59 37.88 0.29 0.63 16 24 C 0.16 2.91 4.36 -83.70 -0.37 2.55 16 25 C -0.12 -1.97 8.53 -39.39 -0.34 -2.31 16 26 C -0.11 -1.48 10.04 -39.61 -0.40 -1.88 16 27 C -0.13 -1.68 10.04 -39.55 -0.40 -2.08 16 28 C -0.11 -1.47 10.04 -39.61 -0.40 -1.87 16 29 C -0.12 -1.99 9.69 -39.39 -0.38 -2.37 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.04 0.94 7.86 -51.93 -0.41 0.53 16 32 H 0.05 1.35 7.49 -51.93 -0.39 0.96 16 33 H 0.10 1.37 7.97 -51.93 -0.41 0.95 16 34 H 0.10 1.43 7.08 -51.93 -0.37 1.06 16 35 H 0.12 1.47 8.04 -51.93 -0.42 1.06 16 36 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.09 0.50 8.14 -51.92 -0.42 0.07 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 0.79 8.06 -51.93 -0.42 0.37 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.12 1.97 7.99 -52.48 -0.42 1.55 16 44 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 45 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 46 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 47 H 0.12 1.93 8.06 -52.49 -0.42 1.50 16 LS Contribution 400.30 15.07 6.03 6.03 Total: -1.00 -33.59 400.30 -8.95 -42.54 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.99 Total: 2.03 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -2.43 Total: -1.78 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.45 Total: -37.62 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.99 Total: -27.97 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.59 -8.95 -42.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113674209.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.362 kcal (2) G-P(sol) polarization free energy of solvation -33.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds