Wall clock time and date at job start Wed Apr 1 2020 04:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99888 * 2 1 4 4 H 1.48499 * 109.46999 * 269.99517 * 3 2 1 5 5 H 1.48493 * 109.47192 * 29.99658 * 3 2 1 6 6 H 1.48501 * 109.47153 * 149.99963 * 3 2 1 7 7 C 1.38695 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99892 * 0.02562 * 7 2 1 9 9 O 1.34814 * 120.00371 * 180.02562 * 7 2 1 10 10 C 1.35518 * 117.00181 * 174.93484 * 9 7 2 11 11 C 1.38831 * 120.15937 * 5.57555 * 10 9 7 12 12 C 1.38029 * 120.06823 * 179.97438 * 11 10 9 13 13 C 1.38570 * 120.40642 * 359.97438 * 12 11 10 14 14 C 1.37827 * 120.32199 * 359.97438 * 13 12 11 15 15 C 1.39675 * 119.91868 * 359.80783 * 14 13 12 16 16 C 1.47530 * 120.19754 * 180.21202 * 15 14 13 17 17 O 1.21592 * 120.00392 * 126.77427 * 16 15 14 18 18 N 1.34780 * 119.99992 * 306.76966 * 16 15 14 19 19 C 1.47146 * 120.98014 * 353.80874 * 18 16 15 20 20 C 1.52879 * 108.60954 * 230.49623 * 19 18 16 21 21 O 1.42967 * 109.29736 * 307.93950 * 20 19 18 22 22 C 1.42963 * 114.16694 * 62.44216 * 21 20 19 23 23 H 1.09000 * 109.51110 * 57.34564 * 22 21 20 24 24 C 1.53003 * 109.50868 * 177.49670 * 22 21 20 25 25 H 1.09006 * 110.26942 * 184.04967 * 24 22 21 26 26 C 1.54944 * 110.31060 * 306.13617 * 24 22 21 27 27 C 1.55410 * 100.89103 * 155.29048 * 26 24 22 28 28 C 1.54386 * 102.31103 * 325.99164 * 27 26 24 29 29 O 1.43240 * 107.58399 * 21.28431 * 28 27 26 30 30 C 1.47151 * 120.98255 * 174.08527 * 18 16 15 31 31 H 0.97005 * 119.99917 * 0.02562 * 1 2 3 32 32 H 1.07999 * 119.96771 * 359.97438 * 11 10 9 33 33 H 1.08002 * 119.79833 * 179.97438 * 12 11 10 34 34 H 1.07992 * 119.84003 * 179.97438 * 13 12 11 35 35 H 1.08002 * 120.04498 * 180.02562 * 14 13 12 36 36 H 1.08997 * 109.68758 * 350.27972 * 19 18 16 37 37 H 1.09003 * 109.68536 * 110.83467 * 19 18 16 38 38 H 1.09000 * 109.58615 * 187.92553 * 20 19 18 39 39 H 1.09003 * 109.40872 * 67.83992 * 20 19 18 40 40 H 1.09003 * 111.12620 * 273.28359 * 26 24 22 41 41 H 1.09000 * 111.12265 * 37.44450 * 26 24 22 42 42 H 1.09002 * 110.88031 * 207.75448 * 27 26 24 43 43 H 1.08998 * 110.93606 * 84.25084 * 27 26 24 44 44 H 1.08995 * 109.82980 * 261.77078 * 28 27 26 45 45 H 1.09002 * 109.90186 * 140.84171 * 28 27 26 46 46 H 1.09003 * 109.68101 * 249.16938 * 30 18 16 47 47 H 1.08997 * 109.68154 * 9.72660 * 30 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0087 -1.2011 0.0005 8 1 1.4687 -2.1364 0.0005 9 8 3.3568 -1.2011 0.0011 10 6 3.9720 -2.4039 0.1082 11 6 3.2242 -3.5735 0.0947 12 6 3.8528 -4.7975 0.2034 13 6 5.2312 -4.8697 0.3260 14 6 5.9897 -3.7189 0.3401 15 6 5.3680 -2.4733 0.2264 16 6 6.1743 -1.2379 0.2361 17 8 6.0538 -0.4261 -0.6610 18 7 7.0446 -1.0091 1.2395 19 6 7.1120 -1.9070 2.4033 20 6 7.0357 -1.0630 3.6757 21 8 8.0186 -0.0267 3.6150 22 6 7.8303 0.8963 2.5396 23 1 6.8409 1.3472 2.6159 24 6 8.8983 1.9896 2.6117 25 1 8.7235 2.7396 1.8402 26 6 8.8982 2.6499 4.0134 27 6 10.3561 3.1831 4.0869 28 6 11.1400 2.1070 3.3053 29 8 10.2077 1.4180 2.4640 30 6 7.9513 0.1494 1.2064 31 1 -0.4850 0.8401 -0.0004 32 1 2.1495 -3.5256 -0.0009 33 1 3.2668 -5.7047 0.1929 34 1 5.7135 -5.8322 0.4108 35 1 7.0637 -3.7804 0.4354 36 1 6.2758 -2.6057 2.3769 37 1 8.0522 -2.4583 2.3878 38 1 7.2248 -1.6937 4.5444 39 1 6.0434 -0.6192 3.7571 40 1 8.1769 3.4656 4.0634 41 1 8.7103 1.9133 4.7946 42 1 10.6980 3.2382 5.1204 43 1 10.4404 4.1546 3.5999 44 1 11.5986 1.4049 4.0016 45 1 11.9102 2.5788 2.6951 46 1 8.9774 -0.1913 1.0682 47 1 7.6705 0.8120 0.3878 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151427998.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:18 Heat of formation + Delta-G solvation = -111.218263 kcal Electronic energy + Delta-G solvation = -31715.002355 eV Core-core repulsion = 27443.206944 eV Total energy + Delta-G solvation = -4271.795411 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.51941 -39.69022 -38.77717 -37.63603 -36.59558 -34.46240 -32.59497 -32.50861 -32.24965 -30.67918 -29.30260 -28.98299 -27.26439 -25.39688 -24.31195 -23.43987 -22.31289 -21.76158 -21.38648 -20.73716 -19.28662 -18.02246 -17.61284 -17.26668 -16.79361 -16.43960 -15.82723 -15.70481 -15.41386 -15.08153 -14.80910 -14.74455 -14.34817 -14.07305 -13.99358 -13.87367 -13.76899 -13.51161 -13.15615 -12.94085 -12.71614 -12.43040 -12.29174 -12.07667 -11.98841 -11.70619 -11.45382 -11.38906 -11.28484 -11.24697 -11.02521 -10.88983 -10.83051 -10.60179 -10.27821 -10.06411 -9.68993 -9.67000 -9.24534 -8.96890 -8.41936 -8.29580 -7.54998 -6.52931 -4.19134 1.64873 2.12097 3.06821 3.19975 3.27068 3.30872 3.43352 3.51757 3.63596 4.20549 4.29188 4.33363 4.45213 4.65000 4.65400 4.80302 4.87780 4.93146 4.99942 5.03392 5.07039 5.13429 5.22455 5.34681 5.39908 5.40806 5.49538 5.50475 5.58235 5.58516 5.62358 5.69011 5.75699 5.80723 5.89492 5.99632 6.01474 6.06024 6.32479 6.48024 6.66791 6.81685 6.83668 6.95489 7.08528 7.10991 7.42612 7.59608 7.70711 7.89389 8.63237 8.81870 9.42645 10.53184 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011110 B = 0.003818 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.727054 B = 7331.567298 C = 9061.614374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.258 1.258 7 C -0.394 4.394 8 H 0.110 0.890 9 O -0.191 6.191 10 C 0.197 3.803 11 C -0.222 4.222 12 C -0.055 4.055 13 C -0.213 4.213 14 C -0.044 4.044 15 C -0.217 4.217 16 C 0.581 3.419 17 O -0.527 6.527 18 N -0.620 5.620 19 C 0.076 3.924 20 C 0.046 3.954 21 O -0.369 6.369 22 C 0.079 3.921 23 H 0.075 0.925 24 C 0.091 3.909 25 H 0.087 0.913 26 C -0.148 4.148 27 C -0.155 4.155 28 C 0.053 3.947 29 O -0.369 6.369 30 C 0.090 3.910 31 H 0.282 0.718 32 H 0.139 0.861 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.089 0.145 10.052 20.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.134 4.134 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.182 1.182 7 C -0.469 4.469 8 H 0.127 0.873 9 O -0.093 6.093 10 C 0.141 3.859 11 C -0.241 4.241 12 C -0.074 4.074 13 C -0.232 4.232 14 C -0.062 4.062 15 C -0.221 4.221 16 C 0.371 3.629 17 O -0.402 6.402 18 N -0.355 5.355 19 C -0.047 4.047 20 C -0.031 4.031 21 O -0.287 6.287 22 C 0.021 3.979 23 H 0.093 0.907 24 C 0.033 3.967 25 H 0.104 0.896 26 C -0.185 4.185 27 C -0.193 4.193 28 C -0.023 4.023 29 O -0.288 6.288 30 C -0.033 4.033 31 H 0.092 0.908 32 H 0.156 0.844 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.121 0.879 37 H 0.091 0.909 38 H 0.124 0.876 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.100 0.900 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 18.066 0.829 9.510 20.433 hybrid contribution -0.184 0.689 -0.046 0.715 sum 17.882 1.518 9.464 20.289 Atomic orbital electron populations 1.69624 1.05601 1.28826 1.46564 1.24453 0.94978 0.98953 0.95019 0.86186 0.80188 0.81167 0.79584 1.19497 1.20813 1.18221 1.20843 0.76661 0.96810 1.52552 0.87276 1.83616 1.22730 1.25469 1.77534 1.18940 0.89971 0.85884 0.91091 1.21263 1.01361 0.91545 1.09958 1.20965 0.94374 0.96779 0.95244 1.20563 0.93937 0.97298 1.11442 1.20730 0.98563 0.90709 0.96223 1.18712 0.91236 0.93082 1.19098 1.18265 0.77856 0.85884 0.80864 1.90751 1.65676 1.46978 1.36833 1.48043 1.38851 1.27515 1.21140 1.22350 1.03708 0.93367 0.85297 1.22939 0.92566 0.89817 0.97796 1.87933 1.51578 1.40075 1.49149 1.22618 0.97824 0.89952 0.87540 0.90721 1.22989 0.83209 0.93079 0.97411 0.89555 1.23255 0.96697 1.00889 0.97690 1.23124 0.95442 0.99172 1.01568 1.23071 0.92273 0.93914 0.93078 1.88447 1.17301 1.58271 1.64831 1.22106 0.94275 0.88833 0.98047 0.90798 0.84353 0.86738 0.86827 0.86509 0.87937 0.90914 0.87609 0.92467 0.89986 0.89001 0.90089 0.90690 0.91415 0.91664 0.90015 0.88442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.85 13.96 55.48 0.77 -24.08 16 2 C 0.07 2.00 5.49 -17.52 -0.10 1.91 16 3 Si 0.90 22.65 28.62 -169.99 -4.86 17.79 16 4 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.26 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.39 -11.05 9.95 30.90 0.31 -10.74 16 8 H 0.11 3.05 5.44 -52.49 -0.29 2.77 16 9 O -0.19 -5.18 7.77 -3.10 -0.02 -5.20 16 10 C 0.20 4.57 6.64 -38.60 -0.26 4.32 16 11 C -0.22 -4.59 9.16 -39.44 -0.36 -4.95 16 12 C -0.06 -0.92 10.03 -39.54 -0.40 -1.32 16 13 C -0.21 -3.26 10.02 -39.61 -0.40 -3.66 16 14 C -0.04 -0.71 7.85 -39.20 -0.31 -1.02 16 15 C -0.22 -4.42 4.62 -104.81 -0.48 -4.90 16 16 C 0.58 12.24 6.85 -12.47 -0.09 12.16 16 17 O -0.53 -13.15 16.20 1.37 0.02 -13.13 16 18 N -0.62 -10.48 3.03 -173.77 -0.53 -11.01 16 19 C 0.08 1.02 5.65 -3.75 -0.02 0.99 16 20 C 0.05 0.56 6.97 37.10 0.26 0.82 16 21 O -0.37 -4.87 9.26 -41.09 -0.38 -5.25 16 22 C 0.08 1.07 2.74 -26.58 -0.07 1.00 16 23 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 24 C 0.09 1.03 3.32 -25.70 -0.09 0.95 16 25 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 26 C -0.15 -1.36 6.52 -24.43 -0.16 -1.52 16 27 C -0.16 -1.17 7.02 -24.73 -0.17 -1.34 16 28 C 0.05 0.48 7.80 37.88 0.30 0.77 16 29 O -0.37 -4.51 10.16 -41.09 -0.42 -4.93 16 30 C 0.09 1.39 5.88 -3.54 -0.02 1.37 16 31 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.14 2.97 5.64 -52.49 -0.30 2.67 16 33 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 35 H 0.12 1.61 7.73 -52.49 -0.41 1.20 16 36 H 0.10 1.40 5.61 -51.93 -0.29 1.11 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.93 7.18 -51.93 -0.37 0.56 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.08 1.21 7.46 -51.93 -0.39 0.82 16 47 H 0.10 1.64 7.06 -51.93 -0.37 1.27 16 LS Contribution 378.80 15.07 5.71 5.71 Total: -1.00 -33.14 378.80 -8.38 -41.52 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -6.61 Total: 3.75 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -2.06 Total: -5.17 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.25 Total: -35.08 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.80 Total: -28.51 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.86 Total: 17.79 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.14 -8.38 -41.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151427998.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.700 kcal (2) G-P(sol) polarization free energy of solvation -33.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds