Wall clock time and date at job start Wed Apr 1 2020 04:47:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86803 * 119.99650 * 2 1
4 4 H 1.48503 * 109.46835 * 180.02562 * 3 2 1
5 5 H 1.48493 * 109.47181 * 300.00116 * 3 2 1
6 6 H 1.48502 * 109.47149 * 60.00220 * 3 2 1
7 7 C 1.38695 * 119.99963 * 179.97438 * 2 1 3
8 8 H 1.08007 * 119.99431 * 180.02562 * 7 2 1
9 9 O 1.34813 * 120.00092 * 0.02562 * 7 2 1
10 10 C 1.35520 * 116.99776 * 174.95948 * 9 7 2
11 11 C 1.38838 * 120.16210 * 5.44079 * 10 9 7
12 12 C 1.38027 * 120.06946 * 179.97438 * 11 10 9
13 13 C 1.38571 * 120.40543 * 359.97438 * 12 11 10
14 14 C 1.37830 * 120.32065 * 0.02562 * 13 12 11
15 15 C 1.39663 * 119.91902 * 0.02562 * 14 13 12
16 16 C 1.47540 * 120.19388 * 179.97438 * 15 14 13
17 17 O 1.21590 * 119.99894 * 233.80899 * 16 15 14
18 18 N 1.34776 * 120.00178 * 53.81054 * 16 15 14
19 19 C 1.46926 * 120.63073 * 5.82067 * 18 16 15
20 20 C 1.53191 * 108.77348 * 126.36862 * 19 18 16
21 21 C 1.53044 * 109.31052 * 54.64157 * 20 19 18
22 22 C 1.53041 * 109.53584 * 298.63195 * 21 20 19
23 23 H 1.09005 * 109.49605 * 301.41283 * 22 21 20
24 24 C 1.52995 * 109.50068 * 181.35252 * 22 21 20
25 25 O 1.43755 * 109.63010 * 299.36362 * 24 22 21
26 26 C 1.44782 * 104.81655 * 215.80817 * 25 24 22
27 27 C 1.54912 * 101.72033 * 36.10016 * 26 25 24
28 28 O 1.43369 * 109.63715 * 179.97438 * 24 22 21
29 29 C 1.46923 * 120.63217 * 185.54936 * 18 16 15
30 30 H 0.97002 * 120.00391 * 359.97438 * 1 2 3
31 31 H 1.07993 * 119.96339 * 0.25992 * 11 10 9
32 32 H 1.08005 * 119.79444 * 180.02562 * 12 11 10
33 33 H 1.07998 * 119.83981 * 180.02562 * 13 12 11
34 34 H 1.08003 * 120.03860 * 180.02562 * 14 13 12
35 35 H 1.09000 * 109.58638 * 246.16044 * 19 18 16
36 36 H 1.09004 * 109.58327 * 6.58430 * 19 18 16
37 37 H 1.08997 * 109.49640 * 174.58543 * 20 19 18
38 38 H 1.08999 * 109.50070 * 294.65655 * 20 19 18
39 39 H 1.08993 * 109.46160 * 58.65166 * 21 20 19
40 40 H 1.08999 * 109.45597 * 178.61373 * 21 20 19
41 41 H 1.09001 * 109.62833 * 59.60479 * 24 22 21
42 42 H 1.09006 * 110.97541 * 277.98953 * 26 25 24
43 43 H 1.09001 * 110.98076 * 154.21358 * 26 25 24
44 44 H 1.09004 * 110.69035 * 206.03961 * 27 26 25
45 45 H 1.09000 * 110.69329 * 82.84424 * 27 26 25
46 46 H 1.09005 * 109.58690 * 353.40920 * 29 18 16
47 47 H 1.08995 * 109.58975 * 113.83859 * 29 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7091 1.3465 -0.0006
5 1 1.8903 2.3965 -1.2124
6 1 1.8903 2.3965 1.2125
7 6 2.0087 -1.2011 0.0005
8 1 3.0887 -1.2010 0.0010
9 8 1.3346 -2.3687 0.0005
10 6 2.0687 -3.5029 -0.1050
11 6 3.4556 -3.4398 -0.0934
12 6 4.2015 -4.5962 -0.2005
13 6 3.5749 -5.8264 -0.3196
14 6 2.1990 -5.9081 -0.3330
15 6 1.4312 -4.7463 -0.2265
16 6 -0.0420 -4.8267 -0.2407
17 8 -0.6795 -4.1617 -1.0343
18 7 -0.6811 -5.6371 0.6260
19 6 0.0637 -6.3492 1.6734
20 6 -0.5774 -6.0411 3.0302
21 6 -2.0679 -6.3841 2.9752
22 6 -2.7523 -5.5231 1.9110
23 1 -2.6103 -4.4689 2.1494
24 6 -4.2482 -5.8425 1.8801
25 8 -4.4393 -7.2285 1.5498
26 6 -5.6378 -7.2538 0.7379
27 6 -5.5020 -5.9358 -0.0647
28 8 -4.8924 -5.0370 0.8843
29 6 -2.1365 -5.8208 0.5451
30 1 -0.4851 0.8400 0.0004
31 1 3.9513 -2.4853 0.0042
32 1 5.2801 -4.5420 -0.1905
33 1 4.1674 -6.7255 -0.4024
34 1 1.7154 -6.8693 -0.4256
35 1 0.0234 -7.4221 1.4853
36 1 1.1013 -6.0151 1.6752
37 1 -0.0952 -6.6380 3.8043
38 1 -0.4554 -4.9823 3.2582
39 1 -2.1891 -7.4375 2.7230
40 1 -2.5214 -6.1890 3.9470
41 1 -4.6867 -5.6372 2.8566
42 1 -6.5318 -7.2407 1.3614
43 1 -5.6405 -8.1174 0.0728
44 1 -6.4817 -5.5677 -0.3693
45 1 -4.8562 -6.0774 -0.9313
46 1 -2.5503 -5.1382 -0.1973
47 1 -2.3599 -6.8497 0.2631
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000170831594.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:47:47
Heat of formation + Delta-G solvation = -117.729040 kcal
Electronic energy + Delta-G solvation = -31803.133767 eV
Core-core repulsion = 27531.056027 eV
Total energy + Delta-G solvation = -4272.077740 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.161 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-40.76620 -39.78396 -38.50766 -36.72116 -36.33612 -35.09797 -33.12015 -32.33648
-31.45909 -30.54628 -29.27157 -28.94090 -25.61727 -25.22957 -25.08328 -23.40348
-22.62537 -21.91627 -21.46904 -20.24380 -18.88798 -18.03226 -17.42609 -17.20447
-16.74118 -16.26139 -16.12586 -15.37216 -14.97918 -14.76788 -14.66873 -14.18481
-14.13245 -14.10239 -13.93912 -13.66348 -13.53467 -13.36625 -13.17322 -12.88744
-12.76507 -12.57405 -12.25923 -12.17694 -11.82408 -11.71773 -11.40174 -11.18456
-11.00910 -11.00393 -10.84010 -10.73356 -10.68045 -10.43695 -10.38654 -10.38312
-9.67275 -9.56270 -8.97010 -8.86762 -8.21959 -8.11647 -7.31655 -6.44600
-4.05111 1.84609 2.30378 3.11902 3.13748 3.19186 3.28877 3.38923
3.62568 3.87246 3.94175 4.38738 4.50490 4.67193 4.74672 4.78870
4.93518 4.98381 5.04644 5.12093 5.18548 5.21251 5.29194 5.34799
5.40909 5.54541 5.55550 5.59854 5.66036 5.72118 5.78117 5.79401
5.93506 5.99781 6.02235 6.11952 6.18197 6.18818 6.30609 6.48346
6.58285 6.66920 6.93814 6.95338 7.02856 7.07342 7.26226 7.30979
7.69093 7.92054 8.01147 8.95611 8.98360 9.65603 10.70922
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.010796 B = 0.003671 C = 0.003020
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2592.844699 B = 7625.062849 C = 9268.047363
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.843 5.843
2 C 0.043 3.957
3 Si 0.942 3.058
4 H -0.266 1.266
5 H -0.275 1.275
6 H -0.275 1.275
7 C -0.399 4.399
8 H 0.095 0.905
9 O -0.150 6.150
10 C 0.187 3.813
11 C -0.235 4.235
12 C -0.056 4.056
13 C -0.224 4.224
14 C -0.042 4.042
15 C -0.214 4.214
16 C 0.577 3.423
17 O -0.518 6.518
18 N -0.616 5.616
19 C 0.109 3.891
20 C -0.136 4.136
21 C -0.106 4.106
22 C -0.116 4.116
23 H 0.095 0.905
24 C 0.242 3.758
25 O -0.374 6.374
26 C 0.016 3.984
27 C 0.019 3.981
28 O -0.377 6.377
29 C 0.128 3.872
30 H 0.271 0.729
31 H 0.132 0.868
32 H 0.110 0.890
33 H 0.110 0.890
34 H 0.114 0.886
35 H 0.061 0.939
36 H 0.094 0.906
37 H 0.074 0.926
38 H 0.070 0.930
39 H 0.070 0.930
40 H 0.063 0.937
41 H 0.086 0.914
42 H 0.074 0.926
43 H 0.107 0.893
44 H 0.099 0.901
45 H 0.078 0.922
46 H 0.093 0.907
47 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.689 -15.493 5.180 17.299
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.476 5.476
2 C -0.163 4.163
3 Si 0.766 3.234
4 H -0.190 1.190
5 H -0.200 1.200
6 H -0.201 1.201
7 C -0.475 4.475
8 H 0.112 0.888
9 O -0.050 6.050
10 C 0.129 3.871
11 C -0.254 4.254
12 C -0.074 4.074
13 C -0.243 4.243
14 C -0.061 4.061
15 C -0.219 4.219
16 C 0.367 3.633
17 O -0.392 6.392
18 N -0.351 5.351
19 C -0.014 4.014
20 C -0.174 4.174
21 C -0.144 4.144
22 C -0.136 4.136
23 H 0.113 0.887
24 C 0.146 3.854
25 O -0.294 6.294
26 C -0.061 4.061
27 C -0.057 4.057
28 O -0.298 6.298
29 C 0.005 3.995
30 H 0.081 0.919
31 H 0.149 0.851
32 H 0.128 0.872
33 H 0.128 0.872
34 H 0.132 0.868
35 H 0.079 0.921
36 H 0.112 0.888
37 H 0.092 0.908
38 H 0.089 0.911
39 H 0.089 0.911
40 H 0.081 0.919
41 H 0.103 0.897
42 H 0.092 0.908
43 H 0.125 0.875
44 H 0.117 0.883
45 H 0.096 0.904
46 H 0.111 0.889
47 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -6.356 -14.815 4.809 16.823
hybrid contribution 0.391 0.771 0.054 0.866
sum -5.966 -14.044 4.863 16.015
Atomic orbital electron populations
1.70091 1.05998 1.27704 1.43762 1.25360 0.95811 0.98927 0.96223
0.85648 0.79150 0.80275 0.78336 1.18982 1.20008 1.20068 1.21447
0.91844 0.80711 1.53507 0.88787 1.84005 1.34213 1.11333 1.75482
1.19183 0.89954 0.87039 0.90902 1.21134 0.93269 0.99348 1.11647
1.20882 0.98646 0.92279 0.95631 1.20471 0.93933 0.97125 1.12753
1.20708 0.93630 0.95495 0.96265 1.18734 0.92024 0.92249 1.18861
1.18230 0.87440 0.77602 0.80016 1.90786 1.67847 1.41386 1.39197
1.47959 1.06998 1.47628 1.32558 1.21744 0.97175 0.95946 0.86551
1.21927 0.95422 1.02751 0.97302 1.21428 0.95296 0.99857 0.97813
1.21945 0.92145 1.02041 0.97455 0.88665 1.24080 0.93308 0.75958
0.92050 1.89233 1.44137 1.25206 1.70859 1.24377 0.88795 0.99363
0.93518 1.24223 0.99375 0.88799 0.93348 1.88987 1.71658 1.30844
1.38277 1.21243 0.80239 1.01312 0.96721 0.91894 0.85074 0.87173
0.87184 0.86778 0.92078 0.88826 0.90754 0.91103 0.91091 0.91873
0.89697 0.90778 0.87450 0.88291 0.90352 0.88881 0.91865
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.84 -25.63 13.67 55.48 0.76 -24.88 16
2 C 0.04 1.22 5.49 -17.52 -0.10 1.12 16
3 Si 0.94 20.77 29.55 -169.99 -5.02 15.75 16
4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16
5 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16
6 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16
7 C -0.40 -11.37 9.49 30.90 0.29 -11.07 16
8 H 0.09 2.44 5.21 -52.48 -0.27 2.16 16
9 O -0.15 -4.45 8.95 -2.59 -0.02 -4.47 16
10 C 0.19 4.66 6.65 -38.60 -0.26 4.40 16
11 C -0.23 -5.06 9.16 -39.44 -0.36 -5.42 16
12 C -0.06 -0.99 10.03 -39.54 -0.40 -1.38 16
13 C -0.22 -3.69 10.03 -39.61 -0.40 -4.09 16
14 C -0.04 -0.75 7.77 -39.20 -0.30 -1.05 16
15 C -0.21 -4.74 4.62 -104.81 -0.48 -5.23 16
16 C 0.58 13.33 6.83 -12.47 -0.09 13.24 16
17 O -0.52 -14.37 16.17 1.90 0.03 -14.34 16
18 N -0.62 -11.26 2.98 -174.26 -0.52 -11.78 16
19 C 0.11 1.57 5.57 -3.71 -0.02 1.55 16
20 C -0.14 -1.74 6.08 -26.61 -0.16 -1.90 16
21 C -0.11 -1.28 5.01 -26.69 -0.13 -1.41 16
22 C -0.12 -1.69 2.43 -90.72 -0.22 -1.91 16
23 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16
24 C 0.24 3.07 3.65 37.16 0.14 3.21 16
25 O -0.37 -4.31 9.96 -59.03 -0.59 -4.89 16
26 C 0.02 0.13 7.95 38.17 0.30 0.44 16
27 C 0.02 0.19 8.07 38.17 0.31 0.50 16
28 O -0.38 -5.36 10.67 -59.03 -0.63 -5.99 16
29 C 0.13 2.13 5.41 -3.93 -0.02 2.10 16
30 H 0.27 7.52 8.31 -40.82 -0.34 7.19 16
31 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16
32 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16
33 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16
34 H 0.11 1.71 7.75 -52.48 -0.41 1.31 16
35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
36 H 0.09 1.44 5.38 -51.93 -0.28 1.16 16
37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
38 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16
39 H 0.07 0.81 7.75 -51.93 -0.40 0.41 16
40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16
42 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16
43 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16
44 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16
45 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16
46 H 0.09 1.84 6.72 -51.93 -0.35 1.49 16
47 H 0.06 0.95 7.51 -51.93 -0.39 0.56 16
LS Contribution 379.32 15.07 5.72 5.72
Total: -1.00 -35.87 379.32 -8.78 -44.65
By element:
Atomic # 1 Polarization: 13.72 SS G_CDS: -6.61 Total: 7.12 kcal
Atomic # 6 Polarization: -4.99 SS G_CDS: -1.90 Total: -6.89 kcal
Atomic # 7 Polarization: -36.89 SS G_CDS: 0.24 Total: -36.65 kcal
Atomic # 8 Polarization: -28.48 SS G_CDS: -1.21 Total: -29.69 kcal
Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal
Total LS contribution 5.72 Total: 5.72 kcal
Total: -35.87 -8.78 -44.65 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000170831594.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -73.077 kcal
(2) G-P(sol) polarization free energy of solvation -35.870 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.947 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.652 kcal
(6) G-S(sol) free energy of system = (1) + (5) -117.729 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds