Wall clock time and date at job start Wed Apr 1 2020 04:47:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86803 * 119.99650 * 2 1
4 4 H 1.48503 * 109.46835 * 180.02562 * 3 2 1
5 5 H 1.48493 * 109.47181 * 300.00116 * 3 2 1
6 6 H 1.48502 * 109.47149 * 60.00220 * 3 2 1
7 7 C 1.38695 * 119.99963 * 179.97438 * 2 1 3
8 8 H 1.08007 * 119.99431 * 180.02562 * 7 2 1
9 9 O 1.34813 * 120.00092 * 0.02562 * 7 2 1
10 10 C 1.35520 * 116.99776 * 174.95948 * 9 7 2
11 11 C 1.38838 * 120.16210 * 5.44079 * 10 9 7
12 12 C 1.38027 * 120.06946 * 179.97438 * 11 10 9
13 13 C 1.38571 * 120.40543 * 359.97438 * 12 11 10
14 14 C 1.37830 * 120.32065 * 0.02562 * 13 12 11
15 15 C 1.39663 * 119.91902 * 0.02562 * 14 13 12
16 16 C 1.47540 * 120.19388 * 179.97438 * 15 14 13
17 17 O 1.21590 * 119.99894 * 233.80899 * 16 15 14
18 18 N 1.34776 * 120.00178 * 53.81054 * 16 15 14
19 19 C 1.46926 * 120.63073 * 5.82067 * 18 16 15
20 20 C 1.53191 * 108.77348 * 126.36862 * 19 18 16
21 21 C 1.53044 * 109.31052 * 54.64157 * 20 19 18
22 22 C 1.53041 * 109.53584 * 298.63195 * 21 20 19
23 23 H 1.09005 * 109.49605 * 301.41283 * 22 21 20
24 24 C 1.52995 * 109.50068 * 181.35252 * 22 21 20
25 25 O 1.43755 * 109.63010 * 299.36362 * 24 22 21
26 26 C 1.44782 * 104.81655 * 215.80817 * 25 24 22
27 27 C 1.54912 * 101.72033 * 36.10016 * 26 25 24
28 28 O 1.43369 * 109.63715 * 179.97438 * 24 22 21
29 29 C 1.46923 * 120.63217 * 185.54936 * 18 16 15
30 30 H 0.97002 * 120.00391 * 359.97438 * 1 2 3
31 31 H 1.07993 * 119.96339 * 0.25992 * 11 10 9
32 32 H 1.08005 * 119.79444 * 180.02562 * 12 11 10
33 33 H 1.07998 * 119.83981 * 180.02562 * 13 12 11
34 34 H 1.08003 * 120.03860 * 180.02562 * 14 13 12
35 35 H 1.09000 * 109.58638 * 246.16044 * 19 18 16
36 36 H 1.09004 * 109.58327 * 6.58430 * 19 18 16
37 37 H 1.08997 * 109.49640 * 174.58543 * 20 19 18
38 38 H 1.08999 * 109.50070 * 294.65655 * 20 19 18
39 39 H 1.08993 * 109.46160 * 58.65166 * 21 20 19
40 40 H 1.08999 * 109.45597 * 178.61373 * 21 20 19
41 41 H 1.09001 * 109.62833 * 59.60479 * 24 22 21
42 42 H 1.09006 * 110.97541 * 277.98953 * 26 25 24
43 43 H 1.09001 * 110.98076 * 154.21358 * 26 25 24
44 44 H 1.09004 * 110.69035 * 206.03961 * 27 26 25
45 45 H 1.09000 * 110.69329 * 82.84424 * 27 26 25
46 46 H 1.09005 * 109.58690 * 353.40920 * 29 18 16
47 47 H 1.08995 * 109.58975 * 113.83859 * 29 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7091 1.3465 -0.0006
5 1 1.8903 2.3965 -1.2124
6 1 1.8903 2.3965 1.2125
7 6 2.0087 -1.2011 0.0005
8 1 3.0887 -1.2010 0.0010
9 8 1.3346 -2.3687 0.0005
10 6 2.0687 -3.5029 -0.1050
11 6 3.4556 -3.4398 -0.0934
12 6 4.2015 -4.5962 -0.2005
13 6 3.5749 -5.8264 -0.3196
14 6 2.1990 -5.9081 -0.3330
15 6 1.4312 -4.7463 -0.2265
16 6 -0.0420 -4.8267 -0.2407
17 8 -0.6795 -4.1617 -1.0343
18 7 -0.6811 -5.6371 0.6260
19 6 0.0637 -6.3492 1.6734
20 6 -0.5774 -6.0411 3.0302
21 6 -2.0679 -6.3841 2.9752
22 6 -2.7523 -5.5231 1.9110
23 1 -2.6103 -4.4689 2.1494
24 6 -4.2482 -5.8425 1.8801
25 8 -4.4393 -7.2285 1.5498
26 6 -5.6378 -7.2538 0.7379
27 6 -5.5020 -5.9358 -0.0647
28 8 -4.8924 -5.0370 0.8843
29 6 -2.1365 -5.8208 0.5451
30 1 -0.4851 0.8400 0.0004
31 1 3.9513 -2.4853 0.0042
32 1 5.2801 -4.5420 -0.1905
33 1 4.1674 -6.7255 -0.4024
34 1 1.7154 -6.8693 -0.4256
35 1 0.0234 -7.4221 1.4853
36 1 1.1013 -6.0151 1.6752
37 1 -0.0952 -6.6380 3.8043
38 1 -0.4554 -4.9823 3.2582
39 1 -2.1891 -7.4375 2.7230
40 1 -2.5214 -6.1890 3.9470
41 1 -4.6867 -5.6372 2.8566
42 1 -6.5318 -7.2407 1.3614
43 1 -5.6405 -8.1174 0.0728
44 1 -6.4817 -5.5677 -0.3693
45 1 -4.8562 -6.0774 -0.9313
46 1 -2.5503 -5.1382 -0.1973
47 1 -2.3599 -6.8497 0.2631
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000170831594.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:47:46
Heat of formation + Delta-G solvation = -143.418962 kcal
Electronic energy + Delta-G solvation = -31804.247765 eV
Core-core repulsion = 27531.056027 eV
Total energy + Delta-G solvation = -4273.191739 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.161 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-41.89168 -41.28066 -40.13605 -38.25630 -38.06204 -36.04511 -34.48999 -34.35945
-32.66543 -32.02552 -30.64069 -30.22748 -27.50173 -26.77669 -26.17131 -24.21349
-24.14992 -23.20413 -23.01029 -21.56607 -20.34357 -19.91486 -18.86189 -18.32613
-18.07396 -17.60630 -17.24061 -16.83387 -16.59376 -16.35288 -15.98588 -15.63163
-15.52360 -15.47022 -15.25594 -15.07891 -14.97032 -14.65818 -14.46303 -14.26862
-14.08521 -13.85602 -13.68945 -13.58883 -13.37670 -13.04947 -12.76293 -12.63246
-12.58283 -12.36432 -12.21392 -12.11598 -11.92458 -11.88526 -11.60950 -11.45583
-11.19468 -10.88148 -10.83674 -10.57645 -9.80842 -9.59850 -9.06812 -8.49202
-6.20236 0.23979 0.69043 1.30220 1.40984 1.50575 1.71678 2.09270
2.13676 2.45019 2.80160 2.91803 3.11596 3.41662 3.55434 3.62487
3.72191 3.76342 3.91029 4.00653 4.04046 4.10153 4.12542 4.25649
4.26273 4.31467 4.45130 4.51308 4.55095 4.56519 4.60847 4.66988
4.74025 4.80478 4.83463 4.92457 4.95531 4.99878 5.03672 5.06453
5.12447 5.15667 5.39407 5.49726 5.56269 5.63744 5.68857 5.93628
6.03636 6.15155 6.40938 6.92040 7.25212 7.74405 8.73160
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.010796 B = 0.003671 C = 0.003020
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2592.844699 B = 7625.062849 C = 9268.047363
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.916 5.916
2 C -0.025 4.025
3 Si 1.023 2.977
4 H -0.243 1.243
5 H -0.271 1.271
6 H -0.267 1.267
7 C -0.419 4.419
8 H 0.109 0.891
9 O -0.216 6.216
10 C 0.145 3.855
11 C -0.249 4.249
12 C -0.045 4.045
13 C -0.189 4.189
14 C -0.035 4.035
15 C -0.228 4.228
16 C 0.565 3.435
17 O -0.587 6.587
18 N -0.608 5.608
19 C 0.101 3.899
20 C -0.133 4.133
21 C -0.096 4.096
22 C -0.115 4.115
23 H 0.053 0.947
24 C 0.246 3.754
25 O -0.379 6.379
26 C 0.021 3.979
27 C 0.008 3.992
28 O -0.413 6.413
29 C 0.132 3.868
30 H 0.271 0.729
31 H 0.124 0.876
32 H 0.156 0.844
33 H 0.166 0.834
34 H 0.151 0.849
35 H 0.103 0.897
36 H 0.085 0.915
37 H 0.114 0.886
38 H 0.036 0.964
39 H 0.091 0.909
40 H 0.083 0.917
41 H 0.103 0.897
42 H 0.097 0.903
43 H 0.134 0.866
44 H 0.120 0.880
45 H 0.065 0.935
46 H 0.048 0.952
47 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.281 -19.923 6.456 21.198
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.553 5.553
2 C -0.223 4.223
3 Si 0.842 3.158
4 H -0.166 1.166
5 H -0.197 1.197
6 H -0.192 1.192
7 C -0.495 4.495
8 H 0.126 0.874
9 O -0.121 6.121
10 C 0.092 3.908
11 C -0.268 4.268
12 C -0.063 4.063
13 C -0.207 4.207
14 C -0.053 4.053
15 C -0.232 4.232
16 C 0.355 3.645
17 O -0.467 6.467
18 N -0.341 5.341
19 C -0.020 4.020
20 C -0.171 4.171
21 C -0.134 4.134
22 C -0.135 4.135
23 H 0.071 0.929
24 C 0.151 3.849
25 O -0.300 6.300
26 C -0.055 4.055
27 C -0.068 4.068
28 O -0.335 6.335
29 C 0.009 3.991
30 H 0.080 0.920
31 H 0.142 0.858
32 H 0.174 0.826
33 H 0.183 0.817
34 H 0.169 0.831
35 H 0.121 0.879
36 H 0.103 0.897
37 H 0.132 0.868
38 H 0.055 0.945
39 H 0.110 0.890
40 H 0.101 0.899
41 H 0.120 0.880
42 H 0.115 0.885
43 H 0.152 0.848
44 H 0.138 0.862
45 H 0.083 0.917
46 H 0.067 0.933
47 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges -3.903 -19.358 6.130 20.677
hybrid contribution -0.249 1.697 -0.384 1.757
sum -4.151 -17.661 5.746 19.030
Atomic orbital electron populations
1.70287 1.08489 1.28632 1.47924 1.26773 0.96739 1.03204 0.95579
0.84482 0.78503 0.74350 0.78487 1.16607 1.19665 1.19153 1.22007
0.92681 0.81316 1.53513 0.87367 1.83997 1.36060 1.12649 1.79388
1.19903 0.91730 0.86908 0.92296 1.21287 0.92067 1.01032 1.12411
1.21412 1.00761 0.91093 0.93064 1.21159 0.93470 0.98566 1.07493
1.21161 0.94396 0.95180 0.94604 1.19085 0.91955 0.93075 1.19131
1.18670 0.88234 0.77501 0.80062 1.90741 1.69191 1.44361 1.42420
1.48081 1.07879 1.46206 1.31956 1.22112 0.96315 0.97534 0.86039
1.21946 0.96449 1.01388 0.97342 1.21414 0.94274 1.00051 0.97644
1.21903 0.94321 1.00339 0.96962 0.92883 1.24013 0.91677 0.76686
0.92563 1.89189 1.45711 1.23797 1.71309 1.24605 0.88481 0.98897
0.93496 1.24473 0.99843 0.89779 0.92698 1.88974 1.72171 1.32913
1.39443 1.21256 0.79343 1.01334 0.97163 0.92030 0.85802 0.82629
0.81652 0.83133 0.87908 0.89681 0.86812 0.94549 0.89024 0.89871
0.87963 0.88538 0.84827 0.86175 0.91671 0.93328 0.89289
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -61.11 13.67 21.62 0.30 -60.82 16
2 C -0.03 -1.51 5.49 84.85 0.47 -1.04 16
3 Si 1.02 45.03 29.55 68.60 2.03 47.06 16
4 H -0.24 -9.60 7.11 99.48 0.71 -8.89 16
5 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16
6 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16
7 C -0.42 -25.72 9.49 67.93 0.64 -25.08 16
8 H 0.11 5.94 5.21 -2.91 -0.02 5.92 16
9 O -0.22 -14.02 8.95 -16.80 -0.15 -14.17 16
10 C 0.14 7.60 6.65 22.91 0.15 7.75 16
11 C -0.25 -10.71 9.16 22.36 0.20 -10.51 16
12 C -0.05 -1.41 10.03 22.30 0.22 -1.19 16
13 C -0.19 -5.13 10.03 22.25 0.22 -4.91 16
14 C -0.04 -1.13 7.77 22.52 0.18 -0.96 16
15 C -0.23 -10.35 4.62 -19.99 -0.09 -10.44 16
16 C 0.56 27.84 6.83 86.70 0.59 28.43 16
17 O -0.59 -36.04 16.17 -0.76 -0.01 -36.05 16
18 N -0.61 -22.96 2.98 -823.49 -2.45 -25.41 16
19 C 0.10 2.73 5.57 86.36 0.48 3.21 16
20 C -0.13 -3.20 6.08 30.67 0.19 -3.01 16
21 C -0.10 -2.13 5.01 30.62 0.15 -1.98 16
22 C -0.12 -3.48 2.43 -10.86 -0.03 -3.51 16
23 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16
24 C 0.25 6.26 3.65 71.98 0.26 6.53 16
25 O -0.38 -7.95 9.96 -126.22 -1.26 -9.21 16
26 C 0.02 0.30 7.95 72.64 0.58 0.88 16
27 C 0.01 0.16 8.07 72.64 0.59 0.75 16
28 O -0.41 -12.47 10.67 -126.22 -1.35 -13.82 16
29 C 0.13 4.60 5.41 86.22 0.47 5.07 16
30 H 0.27 16.53 8.31 -92.71 -0.77 15.76 16
31 H 0.12 5.40 5.64 -2.91 -0.02 5.38 16
32 H 0.16 3.52 8.06 -2.91 -0.02 3.49 16
33 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16
34 H 0.15 3.77 7.75 -2.91 -0.02 3.75 16
35 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16
36 H 0.08 2.45 5.38 -2.38 -0.01 2.44 16
37 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16
38 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16
39 H 0.09 1.72 7.75 -2.39 -0.02 1.70 16
40 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16
41 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16
42 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16
43 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16
44 H 0.12 1.88 8.14 -2.38 -0.02 1.86 16
45 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16
46 H 0.05 2.14 6.72 -2.38 -0.02 2.12 16
47 H 0.09 2.63 7.51 -2.39 -0.02 2.61 16
Total: -1.00 -93.71 379.32 3.37 -90.34
By element:
Atomic # 1 Polarization: 31.08 SS G_CDS: 0.99 Total: 32.07 kcal
Atomic # 6 Polarization: -15.27 SS G_CDS: 5.28 Total: -10.00 kcal
Atomic # 7 Polarization: -84.07 SS G_CDS: -2.16 Total: -86.23 kcal
Atomic # 8 Polarization: -70.48 SS G_CDS: -2.77 Total: -73.25 kcal
Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal
Total: -93.71 3.37 -90.34 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000170831594.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -53.076 kcal
(2) G-P(sol) polarization free energy of solvation -93.713 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.789 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.343 kcal
(6) G-S(sol) free energy of system = (1) + (5) -143.419 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds