Wall clock time and date at job start Wed Apr 1 2020 04:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46499 * 120.00444 * 2 1 4 4 C 1.34783 * 119.99933 * 180.02562 * 2 1 3 5 5 O 1.21694 * 119.99777 * 6.55269 * 4 2 1 6 6 C 1.46672 * 120.00301 * 186.55239 * 4 2 1 7 7 C 1.37868 * 126.23689 * 201.07550 * 6 4 2 8 8 C 1.39838 * 107.08729 * 180.02562 * 7 6 4 9 9 C 1.35454 * 107.86206 * 359.97438 * 8 7 6 10 10 C 1.50704 * 125.56010 * 180.02562 * 9 8 7 11 11 N 1.46502 * 109.46906 * 95.02813 * 10 9 8 12 12 C 1.39929 * 120.00004 * 179.97438 * 11 10 9 13 13 C 1.38715 * 120.07540 * 0.02562 * 12 11 10 14 14 C 1.38216 * 120.01572 * 179.74253 * 13 12 11 15 15 C 1.38533 * 120.17242 * 0.23073 * 14 13 12 16 16 F 1.35105 * 119.91689 * 180.02562 * 15 14 13 17 17 C 1.38348 * 120.16226 * 0.02562 * 15 14 13 18 18 C 1.38723 * 119.98265 * 0.02562 * 17 15 14 19 19 O 1.35793 * 120.09370 * 179.97438 * 18 17 15 20 20 C 1.34803 * 116.99370 * 354.53371 * 19 18 17 21 21 H 1.07995 * 120.00767 * 5.04887 * 20 19 18 22 22 C 1.38634 * 119.99795 * 185.04512 * 20 19 18 23 23 N 1.31574 * 119.99888 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00191 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47009 * 60.00122 * 24 22 20 26 26 H 1.48500 * 109.47371 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47213 * 300.00391 * 24 22 20 28 28 N 1.35531 * 108.87445 * 0.26678 * 9 8 7 29 29 H 0.96995 * 125.67715 * 179.70865 * 28 9 8 30 30 H 1.08997 * 109.47079 * 269.99916 * 1 2 3 31 31 H 1.09002 * 109.47150 * 30.00036 * 1 2 3 32 32 H 1.09003 * 109.47501 * 150.00103 * 1 2 3 33 33 H 1.08998 * 109.47276 * 186.19673 * 3 2 1 34 34 H 1.09005 * 109.46890 * 306.19729 * 3 2 1 35 35 H 1.08999 * 109.47253 * 66.19295 * 3 2 1 36 36 H 1.07995 * 126.45575 * 0.02562 * 7 6 4 37 37 H 1.07996 * 126.07028 * 179.97438 * 8 7 6 38 38 H 1.08998 * 109.47418 * 335.03087 * 10 9 8 39 39 H 1.09006 * 109.46979 * 215.02647 * 10 9 8 40 40 H 0.96994 * 120.00152 * 0.02562 * 11 10 9 41 41 H 1.08000 * 119.99495 * 0.02562 * 13 12 11 42 42 H 1.07998 * 119.91528 * 180.25398 * 14 13 12 43 43 H 1.08001 * 120.01149 * 179.97438 * 17 15 14 44 44 H 0.97008 * 120.00322 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1389 -1.1673 -0.0005 5 8 1.5363 -2.2176 -0.1213 6 6 3.5984 -1.1716 0.1444 7 6 4.4518 -2.1869 -0.2320 8 6 5.7488 -1.7732 0.0876 9 6 5.6669 -0.5395 0.6408 10 6 6.8325 0.2802 1.1313 11 7 7.2599 1.2019 0.0757 12 6 8.3328 2.0720 0.2987 13 6 8.9932 2.0629 1.5185 14 6 10.0563 2.9191 1.7356 15 6 10.4623 3.7916 0.7391 16 9 11.5024 4.6260 0.9567 17 6 9.8055 3.8105 -0.4783 18 6 8.7370 2.9547 -0.7030 19 8 8.0903 2.9717 -1.8969 20 6 8.4613 3.9200 -2.7802 21 1 9.2948 4.5695 -2.5571 22 6 7.7729 4.0615 -3.9752 23 7 6.7572 3.2706 -4.2469 24 14 8.2864 5.3760 -5.1990 25 1 9.6907 5.1390 -5.6199 26 1 7.3971 5.3210 -6.3869 27 1 8.1795 6.7136 -4.5627 28 7 4.3652 -0.1648 0.6862 29 1 4.0299 0.6738 1.0398 30 1 -0.3633 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 3.2640 1.0724 -0.1109 34 1 1.8536 1.8868 -0.8294 35 1 2.0200 1.7908 0.9402 36 1 4.1714 -3.1249 -0.6877 37 1 6.6549 -2.3371 -0.0774 38 1 7.6583 -0.3818 1.3917 39 1 6.5318 0.8495 2.0109 40 1 6.7986 1.2094 -0.7775 41 1 8.6797 1.3833 2.2972 42 1 10.5719 2.9078 2.6845 43 1 10.1238 4.4919 -1.2534 44 1 6.2756 3.3693 -5.0832 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181541124.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:02 Heat of formation + Delta-G solvation = -4.625326 kcal Electronic energy + Delta-G solvation = -29644.195212 eV Core-core repulsion = 25285.854463 eV Total energy + Delta-G solvation = -4358.340749 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.11850 -41.71164 -39.42861 -39.15920 -36.70503 -35.87892 -34.85213 -32.37427 -31.46304 -30.73149 -29.34463 -28.62891 -27.71063 -26.50130 -25.46197 -24.85008 -22.09181 -21.44448 -21.10487 -20.82444 -19.80353 -18.25661 -17.91083 -17.56817 -16.60019 -16.22089 -16.09119 -15.90366 -15.33895 -15.18161 -14.91283 -14.58628 -14.26956 -14.21447 -13.98961 -13.88388 -13.67957 -13.50943 -13.30000 -13.23891 -12.91504 -12.84535 -12.65377 -12.58466 -12.25270 -12.11204 -11.97476 -11.85629 -11.49728 -11.32047 -10.89711 -10.64643 -10.48317 -10.29350 -9.66926 -9.38305 -9.09698 -8.99869 -8.91816 -8.24083 -7.82832 -6.57695 -6.53976 -4.10479 1.30499 2.03108 2.15364 2.52712 2.66496 2.92197 3.09163 3.09426 3.12159 3.27917 3.87663 4.06568 4.34388 4.38145 4.64593 4.69633 4.89586 4.95603 5.00336 5.03379 5.14784 5.20541 5.23780 5.26930 5.41345 5.48406 5.52278 5.53716 5.57537 5.75747 5.95613 6.01909 6.04056 6.19552 6.32283 6.49023 6.67957 6.72447 6.82647 6.94164 7.02342 7.03491 7.17327 7.23020 7.51647 7.82628 7.90051 7.92575 8.26064 8.91483 9.56039 10.62428 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.008851 B = 0.003153 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3162.856827 B = 8877.329611 C =11075.214083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.623 5.623 3 C 0.050 3.950 4 C 0.592 3.408 5 O -0.530 6.530 6 C -0.052 4.052 7 C -0.104 4.104 8 C -0.183 4.183 9 C 0.040 3.960 10 C 0.197 3.803 11 N -0.744 5.744 12 C 0.150 3.850 13 C -0.144 4.144 14 C -0.197 4.197 15 C 0.089 3.911 16 F -0.157 7.157 17 C -0.242 4.242 18 C 0.124 3.876 19 O -0.175 6.175 20 C -0.388 4.388 21 H 0.091 0.909 22 C 0.042 3.958 23 N -0.862 5.862 24 Si 0.939 3.061 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.270 1.270 28 N -0.533 5.533 29 H 0.420 0.580 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.411 0.589 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.138 0.862 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.848 -4.440 10.371 13.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.357 5.357 3 C -0.094 4.094 4 C 0.381 3.619 5 O -0.407 6.407 6 C -0.165 4.165 7 C -0.131 4.131 8 C -0.208 4.208 9 C -0.078 4.078 10 C 0.072 3.928 11 N -0.380 5.380 12 C 0.049 3.951 13 C -0.168 4.168 14 C -0.217 4.217 15 C 0.069 3.931 16 F -0.136 7.136 17 C -0.263 4.263 18 C 0.068 3.932 19 O -0.079 6.079 20 C -0.464 4.464 21 H 0.109 0.891 22 C -0.163 4.163 23 N -0.497 5.497 24 Si 0.764 3.236 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.195 1.195 28 N -0.136 5.136 29 H 0.264 0.736 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.166 0.834 37 H 0.164 0.836 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.247 0.753 41 H 0.139 0.861 42 H 0.135 0.865 43 H 0.156 0.844 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.646 -5.084 10.231 13.747 hybrid contribution 0.216 1.471 -0.779 1.679 sum -7.430 -3.612 9.453 12.554 Atomic orbital electron populations 1.21655 0.78502 1.03583 1.01902 1.47627 1.07444 1.06111 1.74503 1.22408 0.98504 0.85582 1.02881 1.17192 0.85017 0.83426 0.76236 1.90819 1.68571 1.31068 1.50226 1.20207 0.90828 0.92391 1.13055 1.21296 0.91637 0.98200 1.01970 1.20767 0.97927 0.95876 1.06205 1.20576 0.84470 0.96871 1.05839 1.19621 0.91847 0.90724 0.90607 1.44350 1.35849 1.40618 1.17220 1.17044 0.91651 0.93608 0.92789 1.19929 0.98567 1.02798 0.95488 1.20296 1.01645 1.00751 0.99032 1.17253 0.87906 0.92830 0.95147 1.91386 1.56374 1.70472 1.95368 1.20800 1.00828 1.06671 0.98022 1.18582 0.92838 0.94616 0.87131 1.83891 1.54852 1.49910 1.19199 1.21241 1.16071 1.12017 0.97088 0.89123 1.25232 0.95448 0.98271 0.97308 1.70008 1.18663 1.36487 1.24519 0.85800 0.78783 0.79895 0.79146 1.19418 1.20287 1.19489 1.42811 1.06230 1.16644 1.47904 0.73600 0.92626 0.90980 0.90141 0.89196 0.90473 0.91709 0.83438 0.83575 0.90134 0.92152 0.75253 0.86104 0.86477 0.84419 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.76 10.53 59.85 0.63 1.39 16 2 N -0.62 -6.87 3.27 -191.08 -0.63 -7.50 16 3 C 0.05 0.45 9.57 59.85 0.57 1.02 16 4 C 0.59 8.22 7.61 -12.85 -0.10 8.12 16 5 O -0.53 -8.84 16.50 5.19 0.09 -8.75 16 6 C -0.05 -0.69 6.43 -81.98 -0.53 -1.22 16 7 C -0.10 -1.39 10.72 -39.12 -0.42 -1.81 16 8 C -0.18 -2.29 10.71 -39.98 -0.43 -2.72 16 9 C 0.04 0.48 6.49 -81.95 -0.53 -0.05 16 10 C 0.20 2.35 5.44 -5.19 -0.03 2.32 16 11 N -0.74 -12.05 5.72 -59.63 -0.34 -12.39 16 12 C 0.15 2.77 6.67 -83.52 -0.56 2.21 16 13 C -0.14 -2.31 9.31 -39.41 -0.37 -2.67 16 14 C -0.20 -3.31 10.02 -39.48 -0.40 -3.71 16 15 C 0.09 1.73 7.29 -39.43 -0.29 1.44 16 16 F -0.16 -2.98 17.26 2.25 0.04 -2.94 16 17 C -0.24 -5.17 9.14 -39.36 -0.36 -5.53 16 18 C 0.12 2.75 6.67 -38.93 -0.26 2.49 16 19 O -0.17 -4.51 9.00 -0.01 0.00 -4.51 16 20 C -0.39 -10.22 9.49 30.88 0.29 -9.93 16 21 H 0.09 2.26 5.20 -52.49 -0.27 1.98 16 22 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 23 N -0.86 -23.67 13.67 55.48 0.76 -22.91 16 24 Si 0.94 19.80 29.55 -169.99 -5.02 14.78 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 26 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 27 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 28 N -0.53 -6.08 4.77 -5.69 -0.03 -6.11 16 29 H 0.42 3.94 6.15 -40.82 -0.25 3.69 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 32 H 0.08 0.80 7.34 -51.93 -0.38 0.42 16 33 H 0.09 0.91 3.90 -51.93 -0.20 0.71 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.15 1.62 8.06 -52.49 -0.42 1.19 16 38 H 0.08 0.87 7.95 -51.93 -0.41 0.46 16 39 H 0.06 0.63 7.95 -51.93 -0.41 0.22 16 40 H 0.41 7.62 7.83 -40.82 -0.32 7.30 16 41 H 0.12 1.54 6.73 -52.49 -0.35 1.19 16 42 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 43 H 0.14 3.01 5.64 -52.49 -0.30 2.71 16 44 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 376.35 15.07 5.67 5.67 Total: -1.00 -31.20 376.35 -7.32 -38.52 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -4.99 Total: 13.79 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -2.86 Total: -7.66 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: -0.24 Total: -48.91 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.04 Total: -2.94 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.20 -7.32 -38.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181541124.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.893 kcal (2) G-P(sol) polarization free energy of solvation -31.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds