Wall clock time and date at job start Wed Apr 1 2020 04:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46499 * 120.00444 * 2 1 4 4 C 1.34783 * 119.99933 * 180.02562 * 2 1 3 5 5 O 1.21694 * 119.99777 * 6.55269 * 4 2 1 6 6 C 1.46672 * 120.00301 * 186.55239 * 4 2 1 7 7 C 1.37868 * 126.23689 * 201.07550 * 6 4 2 8 8 C 1.39838 * 107.08729 * 180.02562 * 7 6 4 9 9 C 1.35454 * 107.86206 * 359.97438 * 8 7 6 10 10 C 1.50704 * 125.56010 * 180.02562 * 9 8 7 11 11 N 1.46502 * 109.46906 * 95.02813 * 10 9 8 12 12 C 1.39929 * 120.00004 * 179.97438 * 11 10 9 13 13 C 1.38715 * 120.07540 * 0.02562 * 12 11 10 14 14 C 1.38216 * 120.01572 * 179.74253 * 13 12 11 15 15 C 1.38533 * 120.17242 * 0.23073 * 14 13 12 16 16 F 1.35105 * 119.91689 * 180.02562 * 15 14 13 17 17 C 1.38348 * 120.16226 * 0.02562 * 15 14 13 18 18 C 1.38723 * 119.98265 * 0.02562 * 17 15 14 19 19 O 1.35793 * 120.09370 * 179.97438 * 18 17 15 20 20 C 1.34803 * 116.99370 * 354.53371 * 19 18 17 21 21 H 1.07995 * 120.00767 * 5.04887 * 20 19 18 22 22 C 1.38634 * 119.99795 * 185.04512 * 20 19 18 23 23 N 1.31574 * 119.99888 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00191 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47009 * 60.00122 * 24 22 20 26 26 H 1.48500 * 109.47371 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47213 * 300.00391 * 24 22 20 28 28 N 1.35531 * 108.87445 * 0.26678 * 9 8 7 29 29 H 0.96995 * 125.67715 * 179.70865 * 28 9 8 30 30 H 1.08997 * 109.47079 * 269.99916 * 1 2 3 31 31 H 1.09002 * 109.47150 * 30.00036 * 1 2 3 32 32 H 1.09003 * 109.47501 * 150.00103 * 1 2 3 33 33 H 1.08998 * 109.47276 * 186.19673 * 3 2 1 34 34 H 1.09005 * 109.46890 * 306.19729 * 3 2 1 35 35 H 1.08999 * 109.47253 * 66.19295 * 3 2 1 36 36 H 1.07995 * 126.45575 * 0.02562 * 7 6 4 37 37 H 1.07996 * 126.07028 * 179.97438 * 8 7 6 38 38 H 1.08998 * 109.47418 * 335.03087 * 10 9 8 39 39 H 1.09006 * 109.46979 * 215.02647 * 10 9 8 40 40 H 0.96994 * 120.00152 * 0.02562 * 11 10 9 41 41 H 1.08000 * 119.99495 * 0.02562 * 13 12 11 42 42 H 1.07998 * 119.91528 * 180.25398 * 14 13 12 43 43 H 1.08001 * 120.01149 * 179.97438 * 17 15 14 44 44 H 0.97008 * 120.00322 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1389 -1.1673 -0.0005 5 8 1.5363 -2.2176 -0.1213 6 6 3.5984 -1.1716 0.1444 7 6 4.4518 -2.1869 -0.2320 8 6 5.7488 -1.7732 0.0876 9 6 5.6669 -0.5395 0.6408 10 6 6.8325 0.2802 1.1313 11 7 7.2599 1.2019 0.0757 12 6 8.3328 2.0720 0.2987 13 6 8.9932 2.0629 1.5185 14 6 10.0563 2.9191 1.7356 15 6 10.4623 3.7916 0.7391 16 9 11.5024 4.6260 0.9567 17 6 9.8055 3.8105 -0.4783 18 6 8.7370 2.9547 -0.7030 19 8 8.0903 2.9717 -1.8969 20 6 8.4613 3.9200 -2.7802 21 1 9.2948 4.5695 -2.5571 22 6 7.7729 4.0615 -3.9752 23 7 6.7572 3.2706 -4.2469 24 14 8.2864 5.3760 -5.1990 25 1 9.6907 5.1390 -5.6199 26 1 7.3971 5.3210 -6.3869 27 1 8.1795 6.7136 -4.5627 28 7 4.3652 -0.1648 0.6862 29 1 4.0299 0.6738 1.0398 30 1 -0.3633 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 3.2640 1.0724 -0.1109 34 1 1.8536 1.8868 -0.8294 35 1 2.0200 1.7908 0.9402 36 1 4.1714 -3.1249 -0.6877 37 1 6.6549 -2.3371 -0.0774 38 1 7.6583 -0.3818 1.3917 39 1 6.5318 0.8495 2.0109 40 1 6.7986 1.2094 -0.7775 41 1 8.6797 1.3833 2.2972 42 1 10.5719 2.9078 2.6845 43 1 10.1238 4.4919 -1.2534 44 1 6.2756 3.3693 -5.0832 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181541124.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:01 Heat of formation + Delta-G solvation = -24.564525 kcal Electronic energy + Delta-G solvation = -29645.059840 eV Core-core repulsion = 25285.854463 eV Total energy + Delta-G solvation = -4359.205377 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.60598 -42.68140 -40.84644 -40.31549 -38.27667 -36.83950 -36.15434 -34.24459 -32.41439 -31.87217 -30.87935 -29.65368 -28.70500 -27.58120 -27.24962 -25.90118 -23.54346 -22.70073 -22.33096 -21.79793 -20.81603 -19.97106 -19.31710 -18.71069 -17.85362 -17.41672 -17.27407 -16.90810 -16.85185 -16.47549 -16.35486 -15.95631 -15.68606 -15.50176 -15.19339 -15.06275 -14.93287 -14.80175 -14.73243 -14.24890 -14.12111 -13.73961 -13.62255 -13.56239 -13.51974 -13.37632 -13.13692 -13.04071 -12.87982 -12.78253 -12.37473 -12.21569 -12.00693 -11.49182 -11.37458 -10.77608 -10.71020 -10.04457 -9.91426 -9.39349 -9.22668 -8.44916 -8.00997 -6.06690 0.28449 0.52957 0.65888 1.36377 1.44207 1.49408 1.50948 1.78085 1.97436 2.17326 2.29125 2.80878 2.81333 3.14331 3.37796 3.44941 3.64574 3.71481 3.90991 4.06352 4.18132 4.29490 4.30399 4.32280 4.36423 4.54141 4.58144 4.58755 4.64824 4.69047 4.82459 4.83543 4.96849 5.06174 5.14675 5.15420 5.31042 5.36843 5.48395 5.51498 5.70428 5.83850 5.97462 6.06858 6.10316 6.33818 6.55137 6.78965 6.89196 7.01397 7.77963 8.75999 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.008851 B = 0.003153 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3162.856827 B = 8877.329611 C =11075.214083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.619 5.619 3 C 0.047 3.953 4 C 0.584 3.416 5 O -0.570 6.570 6 C -0.062 4.062 7 C -0.124 4.124 8 C -0.190 4.190 9 C 0.039 3.961 10 C 0.197 3.803 11 N -0.744 5.744 12 C 0.156 3.844 13 C -0.131 4.131 14 C -0.165 4.165 15 C 0.064 3.936 16 F -0.157 7.157 17 C -0.249 4.249 18 C 0.082 3.918 19 O -0.214 6.214 20 C -0.407 4.407 21 H 0.092 0.908 22 C -0.012 4.012 23 N -0.910 5.910 24 Si 1.005 2.995 25 H -0.263 1.263 26 H -0.272 1.272 27 H -0.261 1.261 28 N -0.521 5.521 29 H 0.430 0.570 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.147 0.853 37 H 0.159 0.841 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.397 0.603 41 H 0.169 0.831 42 H 0.156 0.844 43 H 0.119 0.881 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.213 -3.907 13.166 15.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.351 5.351 3 C -0.096 4.096 4 C 0.374 3.626 5 O -0.449 6.449 6 C -0.176 4.176 7 C -0.151 4.151 8 C -0.215 4.215 9 C -0.078 4.078 10 C 0.073 3.927 11 N -0.377 5.377 12 C 0.054 3.946 13 C -0.154 4.154 14 C -0.185 4.185 15 C 0.043 3.957 16 F -0.137 7.137 17 C -0.270 4.270 18 C 0.030 3.970 19 O -0.121 6.121 20 C -0.483 4.483 21 H 0.109 0.891 22 C -0.210 4.210 23 N -0.548 5.548 24 Si 0.826 3.174 25 H -0.188 1.188 26 H -0.197 1.197 27 H -0.186 1.186 28 N -0.124 5.124 29 H 0.276 0.724 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.113 0.887 36 H 0.164 0.836 37 H 0.177 0.823 38 H 0.121 0.879 39 H 0.106 0.894 40 H 0.231 0.769 41 H 0.187 0.813 42 H 0.174 0.826 43 H 0.137 0.863 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.001 -4.521 13.103 15.529 hybrid contribution 0.082 1.239 -1.350 1.834 sum -6.920 -3.281 11.753 14.028 Atomic orbital electron populations 1.21834 0.77175 1.04002 1.03053 1.47764 1.08453 1.05972 1.72957 1.22546 0.97506 0.84758 1.04780 1.17376 0.85324 0.83754 0.76180 1.90788 1.69281 1.32490 1.52387 1.20212 0.90830 0.92982 1.13537 1.21485 0.92395 0.98588 1.02592 1.20992 0.98015 0.96388 1.06058 1.20663 0.84761 0.96723 1.05685 1.19916 0.92293 0.90558 0.89912 1.44547 1.34893 1.40633 1.17636 1.17322 0.91974 0.92697 0.92643 1.20442 0.97227 1.02601 0.95172 1.20823 1.00395 0.97938 0.99298 1.17393 0.88639 0.94395 0.95280 1.91382 1.56323 1.70666 1.95280 1.20851 1.01106 1.06315 0.98748 1.19079 0.93785 0.96720 0.87451 1.83857 1.56629 1.50866 1.20721 1.21573 1.16358 1.12517 0.97900 0.89087 1.26258 0.95454 1.00418 0.98902 1.70129 1.20493 1.38861 1.25281 0.84829 0.78565 0.77298 0.76755 1.18777 1.19657 1.18587 1.42775 1.05888 1.16567 1.47165 0.72433 0.91085 0.88545 0.91745 0.90459 0.89950 0.88650 0.83553 0.82323 0.87912 0.89355 0.76911 0.81334 0.82592 0.86318 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.34 10.53 127.77 1.35 2.68 16 2 N -0.62 -13.16 3.27 -876.67 -2.87 -16.03 16 3 C 0.05 0.77 9.57 127.77 1.22 1.99 16 4 C 0.58 16.35 7.61 86.44 0.66 17.01 16 5 O -0.57 -19.61 16.50 -4.33 -0.07 -19.68 16 6 C -0.06 -1.63 6.43 40.34 0.26 -1.37 16 7 C -0.12 -3.32 10.72 22.57 0.24 -3.08 16 8 C -0.19 -4.55 10.71 22.01 0.24 -4.32 16 9 C 0.04 0.88 6.49 41.35 0.27 1.15 16 10 C 0.20 3.95 5.44 85.63 0.47 4.42 16 11 N -0.74 -22.70 5.72 -342.56 -1.96 -24.67 16 12 C 0.16 5.45 6.67 38.27 0.26 5.70 16 13 C -0.13 -3.56 9.31 22.38 0.21 -3.35 16 14 C -0.16 -4.78 10.02 22.33 0.22 -4.56 16 15 C 0.06 2.35 7.29 22.37 0.16 2.51 16 16 F -0.16 -5.71 17.26 44.97 0.78 -4.94 16 17 C -0.25 -10.77 9.14 22.41 0.20 -10.57 16 18 C 0.08 3.70 6.67 22.69 0.15 3.85 16 19 O -0.21 -11.54 9.00 -22.94 -0.21 -11.75 16 20 C -0.41 -22.45 9.49 67.91 0.64 -21.80 16 21 H 0.09 4.78 5.20 -2.91 -0.02 4.77 16 22 C -0.01 -0.63 5.49 84.83 0.47 -0.17 16 23 N -0.91 -52.16 13.67 21.61 0.30 -51.86 16 24 Si 1.00 41.71 29.55 68.60 2.03 43.73 16 25 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 26 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 27 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 28 N -0.52 -11.14 4.77 -171.93 -0.82 -11.96 16 29 H 0.43 7.22 6.15 -92.71 -0.57 6.65 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.10 1.11 8.07 -2.39 -0.02 1.09 16 32 H 0.06 1.29 7.34 -2.39 -0.02 1.27 16 33 H 0.08 1.48 3.90 -2.39 -0.01 1.47 16 34 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 37 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 38 H 0.10 1.71 7.95 -2.39 -0.02 1.69 16 39 H 0.09 1.36 7.95 -2.38 -0.02 1.34 16 40 H 0.40 14.74 7.83 -92.71 -0.73 14.01 16 41 H 0.17 3.04 6.73 -2.91 -0.02 3.02 16 42 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 43 H 0.12 5.45 5.64 -2.91 -0.02 5.44 16 44 H 0.27 14.45 8.31 -92.70 -0.77 13.68 16 Total: -1.00 -72.52 376.35 3.97 -68.55 By element: Atomic # 1 Polarization: 38.71 SS G_CDS: -0.21 Total: 38.50 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: 7.01 Total: -9.90 kcal Atomic # 7 Polarization: -99.16 SS G_CDS: -5.36 Total: -104.52 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.28 Total: -31.43 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 0.78 Total: -4.94 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -72.52 3.97 -68.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181541124.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.984 kcal (2) G-P(sol) polarization free energy of solvation -72.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds