Wall clock time and date at job start Wed Apr 1 2020 05:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99816 * 2 1 4 4 H 1.48506 * 109.46785 * 239.99825 * 3 2 1 5 5 H 1.48495 * 109.47524 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47342 * 120.00155 * 3 2 1 7 7 C 1.37875 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00226 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00113 * 0.02562 * 7 2 1 10 10 O 1.42897 * 113.27697 * 46.93229 * 9 7 2 11 11 C 1.53490 * 114.20478 * 179.97438 * 9 7 2 12 12 N 1.47068 * 87.98441 * 139.65643 * 11 9 7 13 13 C 1.34781 * 136.06056 * 152.84190 * 12 11 9 14 14 O 1.21545 * 119.99906 * 2.87967 * 13 12 11 15 15 C 1.47860 * 120.00075 * 182.87051 * 13 12 11 16 16 C 1.39608 * 120.11855 * 352.36743 * 15 13 12 17 17 C 1.37954 * 119.96482 * 180.24802 * 16 15 13 18 18 C 1.38290 * 120.20933 * 359.47933 * 17 16 15 19 19 C 1.38804 * 120.23627 * 0.26842 * 18 17 16 20 20 O 1.35911 * 119.98695 * 179.97438 * 19 18 17 21 21 C 1.42899 * 116.99697 * 359.97438 * 20 19 18 22 22 C 1.52999 * 109.47109 * 180.02562 * 21 20 19 23 23 H 1.08996 * 110.33624 * 307.25689 * 22 21 20 24 24 C 1.54479 * 110.37338 * 185.00219 * 22 21 20 25 25 C 1.54512 * 104.06413 * 217.19265 * 24 22 21 26 26 C 1.54485 * 104.06043 * 359.97438 * 25 24 22 27 27 O 1.44422 * 104.80436 * 23.98061 * 26 25 24 28 28 C 1.38501 * 120.03195 * 0.02562 * 19 18 17 29 29 C 1.47067 * 87.88309 * 333.09752 * 12 11 9 30 30 H 0.97001 * 120.00238 * 0.02562 * 1 2 3 31 31 H 0.96693 * 114.00396 * 313.06848 * 10 9 7 32 32 H 1.09000 * 113.47438 * 24.88015 * 11 9 7 33 33 H 1.08999 * 113.46938 * 254.43197 * 11 9 7 34 34 H 1.08003 * 120.01912 * 359.97438 * 16 15 13 35 35 H 1.08003 * 119.89919 * 179.74534 * 17 16 15 36 36 H 1.07994 * 119.88356 * 180.25429 * 18 17 16 37 37 H 1.08994 * 109.47442 * 300.00604 * 21 20 19 38 38 H 1.08998 * 109.47119 * 60.00825 * 21 20 19 39 39 H 1.08995 * 110.50982 * 335.83889 * 24 22 21 40 40 H 1.08995 * 110.50960 * 98.41090 * 24 22 21 41 41 H 1.08997 * 110.51064 * 118.64851 * 25 24 22 42 42 H 1.09003 * 110.51327 * 241.22090 * 25 24 22 43 43 H 1.09009 * 110.36631 * 142.81110 * 26 25 24 44 44 H 1.08991 * 110.37380 * 265.14452 * 26 25 24 45 45 H 1.07994 * 120.10725 * 179.97438 * 28 19 18 46 46 H 1.09003 * 113.46910 * 141.68030 * 29 12 11 47 47 H 1.08999 * 113.47154 * 272.11803 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 0.1928 -2.5403 -0.9588 11 6 2.1489 -3.7441 0.0005 12 7 1.2100 -4.3574 0.9520 13 6 0.8346 -5.6114 1.2735 14 8 1.3670 -6.5620 0.7349 15 6 -0.2247 -5.8305 2.2815 16 6 -0.7258 -4.7544 3.0164 17 6 -1.7105 -4.9633 3.9597 18 6 -2.2114 -6.2345 4.1730 19 6 -1.7231 -7.3097 3.4435 20 8 -2.2187 -8.5570 3.6575 21 6 -3.2399 -8.6879 4.6484 22 6 -3.6691 -10.1531 4.7479 23 1 -3.9355 -10.5375 3.7634 24 6 -4.8586 -10.3002 5.7226 25 6 -4.5855 -11.6360 6.4494 26 6 -3.2637 -12.1384 5.8274 27 8 -2.6138 -10.9482 5.3307 28 6 -0.7302 -7.1123 2.4982 29 6 0.8562 -3.0001 1.3939 30 1 -0.4850 0.8400 -0.0004 31 1 -0.3708 -1.7546 -0.9567 32 1 3.1385 -3.5658 0.4212 33 1 2.1851 -4.2532 -0.9626 34 1 -0.3396 -3.7597 2.8496 35 1 -2.0945 -4.1307 4.5305 36 1 -2.9851 -6.3913 4.9099 37 1 -2.8553 -8.3561 5.6128 38 1 -4.0977 -8.0760 4.3693 39 1 -4.8737 -9.4745 6.4339 40 1 -5.7988 -10.3470 5.1733 41 1 -4.4658 -11.4707 7.5201 42 1 -5.3918 -12.3450 6.2613 43 1 -2.6462 -12.6195 6.5860 44 1 -3.4677 -12.8289 5.0092 45 1 -0.3491 -7.9480 1.9302 46 1 -0.2045 -2.8775 1.6131 47 1 1.4980 -2.6214 2.1894 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186825988.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:09 Heat of formation + Delta-G solvation = -90.014064 kcal Electronic energy + Delta-G solvation = -29768.044883 eV Core-core repulsion = 25497.168955 eV Total energy + Delta-G solvation = -4270.875928 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.49235 -39.89335 -39.25522 -37.67163 -36.71031 -34.06791 -32.64710 -32.21541 -31.62515 -31.11160 -29.84483 -28.42044 -26.21290 -25.52315 -25.29428 -23.31128 -22.34661 -22.17790 -21.36328 -20.20405 -19.03555 -17.88545 -17.32855 -16.96920 -16.67006 -16.47028 -16.22827 -15.68035 -15.39125 -15.12031 -14.99441 -14.81899 -14.64624 -14.23035 -14.15447 -13.72346 -13.43275 -13.23076 -12.78889 -12.68712 -12.47329 -12.32162 -12.26457 -12.00143 -11.81445 -11.75368 -11.71103 -11.57637 -11.18014 -11.07710 -11.02523 -10.98247 -10.84583 -10.47854 -10.25607 -10.15975 -9.68701 -9.25197 -8.92864 -8.80020 -8.36974 -8.19105 -7.87144 -6.42791 -4.53160 1.01194 1.51134 2.87929 3.14813 3.20883 3.22400 3.24396 3.41682 3.55895 4.07543 4.10252 4.16645 4.29971 4.41696 4.61780 4.67381 4.74592 4.79320 4.83916 4.89786 4.98565 5.01334 5.11323 5.21753 5.31089 5.34807 5.36639 5.41464 5.50922 5.54375 5.55710 5.61944 5.87742 6.00991 6.15062 6.24420 6.32480 6.40786 6.43117 6.47650 6.51791 6.56614 6.66517 6.80799 7.08192 7.36300 7.60443 7.77638 8.44137 8.50769 8.73418 9.18183 9.47177 10.63870 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.026440 B = 0.001927 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.728841 B =14526.855036 C =15160.354899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.910 3.090 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.073 0.927 9 C 0.240 3.760 10 O -0.570 6.570 11 C 0.108 3.892 12 N -0.627 5.627 13 C 0.577 3.423 14 O -0.558 6.558 15 C -0.078 4.078 16 C -0.134 4.134 17 C -0.089 4.089 18 C -0.192 4.192 19 C 0.117 3.883 20 O -0.307 6.307 21 C 0.066 3.934 22 C 0.076 3.924 23 H 0.082 0.918 24 C -0.148 4.148 25 C -0.155 4.155 26 C 0.041 3.959 27 O -0.362 6.362 28 C -0.096 4.096 29 C 0.063 3.937 30 H 0.275 0.725 31 H 0.394 0.606 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.150 0.850 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.061 0.939 45 H 0.141 0.859 46 H 0.075 0.925 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.559 -14.701 14.095 23.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.736 3.264 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.572 4.572 8 H 0.091 0.909 9 C 0.198 3.802 10 O -0.383 6.383 11 C -0.014 4.014 12 N -0.359 5.359 13 C 0.367 3.633 14 O -0.438 6.438 15 C -0.081 4.081 16 C -0.152 4.152 17 C -0.107 4.107 18 C -0.211 4.211 19 C 0.072 3.928 20 O -0.221 6.221 21 C -0.010 4.010 22 C 0.018 3.982 23 H 0.100 0.900 24 C -0.186 4.186 25 C -0.192 4.192 26 C -0.035 4.035 27 O -0.281 6.281 28 C -0.115 4.115 29 C -0.060 4.060 30 H 0.085 0.915 31 H 0.251 0.749 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.167 0.833 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.111 0.889 44 H 0.079 0.921 45 H 0.159 0.841 46 H 0.093 0.907 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.968 -15.974 13.640 23.696 hybrid contribution -0.331 1.463 0.507 1.583 sum -11.299 -14.511 14.147 23.203 Atomic orbital electron populations 1.69254 1.06190 1.28359 1.50071 1.25077 0.95035 0.99927 0.92982 0.86358 0.79477 0.81488 0.79034 1.19810 1.20996 1.19857 1.21393 0.93934 0.89672 1.52179 0.90893 1.19496 0.85449 0.91086 0.84135 1.86057 1.45164 1.48382 1.58746 1.23371 0.93833 0.92035 0.92148 1.49551 1.41928 1.04491 1.39908 1.17628 0.82489 0.81321 0.81856 1.90712 1.57391 1.40560 1.55182 1.19754 0.97518 0.93277 0.97592 1.22109 0.97228 1.00124 0.95727 1.20908 0.96149 0.96252 0.97393 1.21340 1.03660 0.93284 1.02838 1.18742 0.94674 0.83630 0.95775 1.86110 1.53171 1.26236 1.56574 1.22843 0.90590 0.95550 0.91971 1.23009 0.87146 0.90487 0.97531 0.90038 1.22910 0.98355 0.98669 0.98651 1.22939 0.98383 0.96848 1.01071 1.23437 0.93321 0.88601 0.98186 1.89257 1.30197 1.31479 1.77132 1.20426 0.95881 0.97279 0.97944 1.24389 1.00619 0.77940 1.03057 0.91485 0.74946 0.89461 0.91325 0.83294 0.85215 0.85547 0.91078 0.90521 0.90193 0.89810 0.90431 0.90269 0.88878 0.92052 0.84076 0.90693 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.18 11.01 55.43 0.61 -21.57 16 2 C 0.07 1.76 5.39 -17.82 -0.10 1.66 16 3 Si 0.91 19.02 29.54 -169.99 -5.02 14.00 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.53 -13.06 8.69 -34.44 -0.30 -13.36 16 8 H 0.07 1.73 7.81 -52.48 -0.41 1.32 16 9 C 0.24 5.69 1.57 -91.39 -0.14 5.55 16 10 O -0.57 -14.65 13.54 -35.23 -0.48 -15.12 16 11 C 0.11 2.38 8.04 -8.51 -0.07 2.31 16 12 N -0.63 -13.62 3.69 -186.51 -0.69 -14.30 16 13 C 0.58 12.64 8.00 -12.32 -0.10 12.55 16 14 O -0.56 -13.61 17.15 5.33 0.09 -13.52 16 15 C -0.08 -1.46 5.87 -104.99 -0.62 -2.08 16 16 C -0.13 -2.19 9.18 -39.17 -0.36 -2.55 16 17 C -0.09 -1.20 10.02 -39.67 -0.40 -1.59 16 18 C -0.19 -2.45 9.03 -39.35 -0.36 -2.80 16 19 C 0.12 1.74 6.68 -39.28 -0.26 1.48 16 20 O -0.31 -4.27 10.13 -19.50 -0.20 -4.46 16 21 C 0.07 0.64 4.34 37.16 0.16 0.80 16 22 C 0.08 0.66 3.57 -25.96 -0.09 0.57 16 23 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 24 C -0.15 -0.83 6.63 -25.16 -0.17 -0.99 16 25 C -0.15 -0.79 7.09 -25.16 -0.18 -0.97 16 26 C 0.04 0.29 7.63 37.94 0.29 0.58 16 27 O -0.36 -3.96 11.34 -35.27 -0.40 -4.36 16 28 C -0.10 -1.67 9.53 -39.02 -0.37 -2.04 16 29 C 0.06 1.31 5.90 -8.64 -0.05 1.26 16 30 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 31 H 0.39 10.15 6.32 45.56 0.29 10.44 16 32 H 0.09 1.74 8.10 -51.93 -0.42 1.32 16 33 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.15 2.48 3.86 -52.48 -0.20 2.28 16 35 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 36 H 0.13 1.20 6.28 -52.49 -0.33 0.87 16 37 H 0.07 0.65 7.66 -51.93 -0.40 0.25 16 38 H 0.08 0.58 7.66 -51.93 -0.40 0.18 16 39 H 0.08 0.40 7.87 -51.93 -0.41 -0.01 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.09 0.55 8.14 -51.92 -0.42 0.12 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.14 2.53 7.67 -52.49 -0.40 2.13 16 46 H 0.08 1.55 6.17 -51.93 -0.32 1.23 16 47 H 0.09 1.69 8.10 -51.93 -0.42 1.26 16 LS Contribution 385.75 15.07 5.81 5.81 Total: -1.00 -30.43 385.75 -9.31 -39.75 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -5.94 Total: 13.42 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -3.11 Total: 0.36 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.08 Total: -35.87 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -0.98 Total: -37.46 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.43 -9.31 -39.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186825988.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.268 kcal (2) G-P(sol) polarization free energy of solvation -30.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds