Wall clock time and date at job start Wed Apr 1 2020 05:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99816 * 2 1 4 4 H 1.48506 * 109.46785 * 239.99825 * 3 2 1 5 5 H 1.48495 * 109.47524 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47342 * 120.00155 * 3 2 1 7 7 C 1.37875 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00226 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00113 * 0.02562 * 7 2 1 10 10 O 1.42897 * 113.27697 * 46.93229 * 9 7 2 11 11 C 1.53490 * 114.20478 * 179.97438 * 9 7 2 12 12 N 1.47068 * 87.98441 * 139.65643 * 11 9 7 13 13 C 1.34781 * 136.06056 * 152.84190 * 12 11 9 14 14 O 1.21545 * 119.99906 * 2.87967 * 13 12 11 15 15 C 1.47860 * 120.00075 * 182.87051 * 13 12 11 16 16 C 1.39608 * 120.11855 * 352.36743 * 15 13 12 17 17 C 1.37954 * 119.96482 * 180.24802 * 16 15 13 18 18 C 1.38290 * 120.20933 * 359.47933 * 17 16 15 19 19 C 1.38804 * 120.23627 * 0.26842 * 18 17 16 20 20 O 1.35911 * 119.98695 * 179.97438 * 19 18 17 21 21 C 1.42899 * 116.99697 * 359.97438 * 20 19 18 22 22 C 1.52999 * 109.47109 * 180.02562 * 21 20 19 23 23 H 1.08996 * 110.33624 * 307.25689 * 22 21 20 24 24 C 1.54479 * 110.37338 * 185.00219 * 22 21 20 25 25 C 1.54512 * 104.06413 * 217.19265 * 24 22 21 26 26 C 1.54485 * 104.06043 * 359.97438 * 25 24 22 27 27 O 1.44422 * 104.80436 * 23.98061 * 26 25 24 28 28 C 1.38501 * 120.03195 * 0.02562 * 19 18 17 29 29 C 1.47067 * 87.88309 * 333.09752 * 12 11 9 30 30 H 0.97001 * 120.00238 * 0.02562 * 1 2 3 31 31 H 0.96693 * 114.00396 * 313.06848 * 10 9 7 32 32 H 1.09000 * 113.47438 * 24.88015 * 11 9 7 33 33 H 1.08999 * 113.46938 * 254.43197 * 11 9 7 34 34 H 1.08003 * 120.01912 * 359.97438 * 16 15 13 35 35 H 1.08003 * 119.89919 * 179.74534 * 17 16 15 36 36 H 1.07994 * 119.88356 * 180.25429 * 18 17 16 37 37 H 1.08994 * 109.47442 * 300.00604 * 21 20 19 38 38 H 1.08998 * 109.47119 * 60.00825 * 21 20 19 39 39 H 1.08995 * 110.50982 * 335.83889 * 24 22 21 40 40 H 1.08995 * 110.50960 * 98.41090 * 24 22 21 41 41 H 1.08997 * 110.51064 * 118.64851 * 25 24 22 42 42 H 1.09003 * 110.51327 * 241.22090 * 25 24 22 43 43 H 1.09009 * 110.36631 * 142.81110 * 26 25 24 44 44 H 1.08991 * 110.37380 * 265.14452 * 26 25 24 45 45 H 1.07994 * 120.10725 * 179.97438 * 28 19 18 46 46 H 1.09003 * 113.46910 * 141.68030 * 29 12 11 47 47 H 1.08999 * 113.47154 * 272.11803 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 0.1928 -2.5403 -0.9588 11 6 2.1489 -3.7441 0.0005 12 7 1.2100 -4.3574 0.9520 13 6 0.8346 -5.6114 1.2735 14 8 1.3670 -6.5620 0.7349 15 6 -0.2247 -5.8305 2.2815 16 6 -0.7258 -4.7544 3.0164 17 6 -1.7105 -4.9633 3.9597 18 6 -2.2114 -6.2345 4.1730 19 6 -1.7231 -7.3097 3.4435 20 8 -2.2187 -8.5570 3.6575 21 6 -3.2399 -8.6879 4.6484 22 6 -3.6691 -10.1531 4.7479 23 1 -3.9355 -10.5375 3.7634 24 6 -4.8586 -10.3002 5.7226 25 6 -4.5855 -11.6360 6.4494 26 6 -3.2637 -12.1384 5.8274 27 8 -2.6138 -10.9482 5.3307 28 6 -0.7302 -7.1123 2.4982 29 6 0.8562 -3.0001 1.3939 30 1 -0.4850 0.8400 -0.0004 31 1 -0.3708 -1.7546 -0.9567 32 1 3.1385 -3.5658 0.4212 33 1 2.1851 -4.2532 -0.9626 34 1 -0.3396 -3.7597 2.8496 35 1 -2.0945 -4.1307 4.5305 36 1 -2.9851 -6.3913 4.9099 37 1 -2.8553 -8.3561 5.6128 38 1 -4.0977 -8.0760 4.3693 39 1 -4.8737 -9.4745 6.4339 40 1 -5.7988 -10.3470 5.1733 41 1 -4.4658 -11.4707 7.5201 42 1 -5.3918 -12.3450 6.2613 43 1 -2.6462 -12.6195 6.5860 44 1 -3.4677 -12.8289 5.0092 45 1 -0.3491 -7.9480 1.9302 46 1 -0.2045 -2.8775 1.6131 47 1 1.4980 -2.6214 2.1894 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186825988.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:08 Heat of formation + Delta-G solvation = -110.989241 kcal Electronic energy + Delta-G solvation = -29768.954435 eV Core-core repulsion = 25497.168955 eV Total energy + Delta-G solvation = -4271.785480 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.79153 -41.08087 -40.21190 -39.23985 -38.02989 -35.95541 -34.11873 -33.22661 -32.45578 -32.36633 -30.94997 -30.02756 -27.40796 -27.02005 -26.76970 -24.50601 -23.45745 -22.97494 -21.98430 -21.73150 -20.53499 -19.52095 -18.87889 -17.95069 -17.77151 -17.47928 -17.21955 -16.87118 -16.67208 -16.61474 -16.43078 -16.03811 -15.90050 -15.78318 -15.04754 -14.83771 -14.65172 -14.58851 -14.31347 -14.19108 -13.84185 -13.49754 -13.39942 -13.30567 -13.05723 -12.75315 -12.70410 -12.55446 -12.41352 -12.34366 -12.20903 -12.13408 -12.02185 -11.89928 -11.50547 -11.44112 -11.04074 -10.80109 -10.65531 -10.22759 -10.14387 -9.63558 -9.33472 -8.26397 -6.43274 -0.27455 0.32905 1.50483 1.52675 1.59660 1.71945 1.75879 2.14785 2.42279 2.75878 2.86304 2.94893 3.35920 3.58164 3.71188 3.74471 3.76354 3.93104 3.98911 4.07580 4.08587 4.10572 4.12778 4.21047 4.34776 4.38260 4.43377 4.46546 4.51642 4.59098 4.73089 4.76912 4.82209 4.83532 4.84381 4.93907 4.95063 5.07342 5.12994 5.15532 5.21742 5.28952 5.33310 5.59653 5.73774 5.85307 5.90732 6.33960 6.61970 6.74077 7.01789 7.30103 7.49627 8.79967 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.026440 B = 0.001927 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.728841 B =14526.855036 C =15160.354899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.035 3.965 3 Si 0.971 3.029 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.221 3.779 10 O -0.587 6.587 11 C 0.105 3.895 12 N -0.630 5.630 13 C 0.569 3.431 14 O -0.596 6.596 15 C -0.103 4.103 16 C -0.142 4.142 17 C -0.077 4.077 18 C -0.172 4.172 19 C 0.119 3.881 20 O -0.328 6.328 21 C 0.056 3.944 22 C 0.069 3.931 23 H 0.074 0.926 24 C -0.141 4.141 25 C -0.150 4.150 26 C 0.031 3.969 27 O -0.400 6.400 28 C -0.118 4.118 29 C 0.080 3.920 30 H 0.278 0.722 31 H 0.390 0.610 32 H 0.107 0.893 33 H 0.054 0.946 34 H 0.145 0.855 35 H 0.169 0.831 36 H 0.170 0.830 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.064 0.936 45 H 0.119 0.881 46 H 0.079 0.921 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.640 -13.838 16.903 25.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.166 4.166 3 Si 0.796 3.204 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.590 4.590 8 H 0.094 0.906 9 C 0.179 3.821 10 O -0.400 6.400 11 C -0.017 4.017 12 N -0.361 5.361 13 C 0.361 3.639 14 O -0.480 6.480 15 C -0.106 4.106 16 C -0.161 4.161 17 C -0.095 4.095 18 C -0.191 4.191 19 C 0.074 3.926 20 O -0.242 6.242 21 C -0.019 4.019 22 C 0.011 3.989 23 H 0.092 0.908 24 C -0.179 4.179 25 C -0.187 4.187 26 C -0.045 4.045 27 O -0.320 6.320 28 C -0.138 4.138 29 C -0.042 4.042 30 H 0.088 0.912 31 H 0.246 0.754 32 H 0.125 0.875 33 H 0.072 0.928 34 H 0.162 0.838 35 H 0.187 0.813 36 H 0.188 0.812 37 H 0.099 0.901 38 H 0.123 0.877 39 H 0.109 0.891 40 H 0.119 0.881 41 H 0.103 0.897 42 H 0.114 0.886 43 H 0.117 0.883 44 H 0.082 0.918 45 H 0.137 0.863 46 H 0.097 0.903 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.061 -15.117 16.464 25.888 hybrid contribution 0.251 1.080 -0.344 1.161 sum -12.810 -14.037 16.120 24.920 Atomic orbital electron populations 1.69312 1.07099 1.29107 1.50076 1.25747 0.95779 1.02582 0.92512 0.85407 0.78244 0.77881 0.78903 1.20178 1.20747 1.19100 1.21594 0.94215 0.90277 1.52939 0.90634 1.19761 0.85458 0.91614 0.85235 1.86044 1.45763 1.48287 1.59898 1.23440 0.94784 0.91425 0.92038 1.49607 1.41837 1.04856 1.39778 1.18281 0.82827 0.80721 0.82084 1.90667 1.58911 1.41547 1.56890 1.19538 0.98011 0.94694 0.98332 1.22119 0.98360 0.98999 0.96573 1.21326 0.94347 0.97781 0.96005 1.21781 1.03258 0.91971 1.02075 1.18753 0.93866 0.84896 0.95091 1.86109 1.54381 1.25796 1.57919 1.23251 0.90420 0.96844 0.91343 1.23176 0.87905 0.89710 0.98093 0.90784 1.22926 0.97491 0.99231 0.98217 1.22945 0.97598 0.96968 1.01217 1.23646 0.94476 0.87757 0.98601 1.89215 1.32177 1.33006 1.77597 1.20333 0.97670 0.96315 0.99514 1.24233 1.01155 0.77026 1.01834 0.91234 0.75356 0.87466 0.92769 0.83784 0.81319 0.81219 0.90125 0.87746 0.89066 0.88063 0.89745 0.88571 0.88330 0.91807 0.86263 0.90342 0.88054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -44.81 11.01 21.45 0.24 -44.57 16 2 C 0.03 1.65 5.39 84.65 0.46 2.11 16 3 Si 0.97 38.28 29.54 68.60 2.03 40.30 16 4 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 7 C -0.55 -26.95 8.69 25.60 0.22 -26.73 16 8 H 0.08 3.55 7.81 -2.91 -0.02 3.53 16 9 C 0.22 10.59 1.57 -11.29 -0.02 10.57 16 10 O -0.59 -30.87 13.54 -148.98 -2.02 -32.88 16 11 C 0.11 4.75 8.04 83.17 0.67 5.42 16 12 N -0.63 -28.06 3.69 -862.76 -3.18 -31.24 16 13 C 0.57 26.03 8.00 86.79 0.69 26.73 16 14 O -0.60 -30.87 17.15 -3.86 -0.07 -30.93 16 15 C -0.10 -3.94 5.87 -20.10 -0.12 -4.06 16 16 C -0.14 -4.51 9.18 22.53 0.21 -4.30 16 17 C -0.08 -1.80 10.02 22.21 0.22 -1.58 16 18 C -0.17 -3.76 9.03 22.42 0.20 -3.56 16 19 C 0.12 3.42 6.68 22.47 0.15 3.57 16 20 O -0.33 -8.82 10.13 -92.51 -0.94 -9.76 16 21 C 0.06 0.93 4.34 71.98 0.31 1.24 16 22 C 0.07 1.09 3.57 31.10 0.11 1.20 16 23 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 24 C -0.14 -1.15 6.63 31.61 0.21 -0.94 16 25 C -0.15 -1.14 7.09 31.61 0.22 -0.92 16 26 C 0.03 0.41 7.63 72.49 0.55 0.96 16 27 O -0.40 -8.53 11.34 -148.94 -1.69 -10.22 16 28 C -0.12 -4.27 9.53 22.63 0.22 -4.06 16 29 C 0.08 3.34 5.90 83.09 0.49 3.83 16 30 H 0.28 12.87 8.31 -92.71 -0.77 12.10 16 31 H 0.39 20.55 6.32 -74.06 -0.47 20.08 16 32 H 0.11 4.32 8.10 -2.39 -0.02 4.31 16 33 H 0.05 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.14 4.65 3.86 -2.91 -0.01 4.64 16 35 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 36 H 0.17 2.23 6.28 -2.91 -0.02 2.21 16 37 H 0.08 1.20 7.66 -2.39 -0.02 1.18 16 38 H 0.10 1.15 7.66 -2.39 -0.02 1.13 16 39 H 0.09 0.55 7.87 -2.39 -0.02 0.53 16 40 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 44 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.12 4.68 7.67 -2.91 -0.02 4.66 16 46 H 0.08 3.23 6.17 -2.39 -0.01 3.22 16 47 H 0.10 3.91 8.10 -2.39 -0.02 3.89 16 Total: -1.00 -68.44 385.75 -0.28 -68.72 By element: Atomic # 1 Polarization: 40.54 SS G_CDS: 0.54 Total: 41.08 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 4.80 Total: 9.50 kcal Atomic # 7 Polarization: -72.87 SS G_CDS: -2.94 Total: -75.82 kcal Atomic # 8 Polarization: -79.08 SS G_CDS: -4.71 Total: -83.79 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.30 kcal Total: -68.44 -0.28 -68.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186825988.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.267 kcal (2) G-P(sol) polarization free energy of solvation -68.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds