Wall clock time and date at job start Wed Apr 1 2020 05:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86804 * 119.99932 * 2 1 4 4 H 1.48498 * 109.47187 * 270.00381 * 3 2 1 5 5 H 1.48506 * 109.46687 * 30.00214 * 3 2 1 6 6 H 1.48496 * 109.46872 * 149.99892 * 3 2 1 7 7 C 1.38656 * 120.00440 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00231 * 179.97438 * 7 2 1 9 9 O 1.34827 * 119.99658 * 0.02562 * 7 2 1 10 10 C 1.35756 * 116.99990 * 185.38550 * 9 7 2 11 11 C 1.38893 * 120.06726 * 5.74735 * 10 9 7 12 12 C 1.38081 * 119.92966 * 179.97438 * 11 10 9 13 13 C 1.38322 * 120.06948 * 359.74135 * 12 11 10 14 14 C 1.38277 * 120.13596 * 0.51161 * 13 12 11 15 15 C 1.50702 * 119.96344 * 179.76212 * 14 13 12 16 16 C 1.50695 * 109.47612 * 269.72692 * 15 14 13 17 17 O 1.21287 * 119.99820 * 0.02562 * 16 15 14 18 18 N 1.34769 * 120.00339 * 179.97438 * 16 15 14 19 19 C 1.47352 * 121.01868 * 16.71555 * 18 16 15 20 20 C 1.53309 * 108.24261 * 229.34064 * 19 18 16 21 21 O 1.42950 * 109.40691 * 307.08820 * 20 19 18 22 22 C 1.43152 * 114.09545 * 63.04272 * 21 20 19 23 23 C 1.46339 * 121.02250 * 196.68892 * 18 16 15 24 24 C 1.53822 * 110.41344 * 9.10578 * 23 18 16 25 25 C 1.54653 * 103.82028 * 240.95607 * 24 23 18 26 26 O 1.44482 * 104.83108 * 23.86021 * 25 24 23 27 27 C 1.44590 * 105.39092 * 319.93437 * 26 25 24 28 28 C 1.38122 * 120.07207 * 359.49702 * 14 13 12 29 29 H 0.96997 * 120.00134 * 359.97438 * 1 2 3 30 30 H 1.08006 * 120.03726 * 359.95702 * 11 10 9 31 31 H 1.08004 * 119.96459 * 180.02562 * 12 11 10 32 32 H 1.08000 * 119.93227 * 180.28455 * 13 12 11 33 33 H 1.09002 * 109.46969 * 149.72926 * 15 14 13 34 34 H 1.09000 * 109.47204 * 29.73010 * 15 14 13 35 35 H 1.09000 * 109.71001 * 109.65125 * 19 18 16 36 36 H 1.08999 * 109.70496 * 349.03214 * 19 18 16 37 37 H 1.09001 * 109.48393 * 67.07945 * 20 19 18 38 38 H 1.09007 * 109.48323 * 187.10934 * 20 19 18 39 39 H 1.09002 * 109.50389 * 178.87665 * 22 21 20 40 40 H 1.08991 * 109.50560 * 58.74662 * 22 21 20 41 41 H 1.08998 * 110.55874 * 359.53562 * 24 23 18 42 42 H 1.08998 * 110.56096 * 122.22632 * 24 23 18 43 43 H 1.08998 * 110.36759 * 142.69795 * 25 24 23 44 44 H 1.09007 * 110.36615 * 265.01985 * 25 24 23 45 45 H 1.09008 * 110.39619 * 281.06467 * 27 26 25 46 46 H 1.08998 * 110.40316 * 158.65401 * 27 26 25 47 47 H 1.07990 * 120.03722 * 180.23308 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4469 2.6527 0.7001 6 1 3.5470 1.4402 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3348 -2.3684 0.0005 10 6 2.0695 -3.5042 0.1146 11 6 3.4373 -3.4282 0.3441 12 6 4.1817 -4.5853 0.4602 13 6 3.5659 -5.8192 0.3535 14 6 2.2053 -5.8982 0.1198 15 6 1.5393 -7.2447 -0.0011 16 6 1.5514 -7.6835 -1.4427 17 8 2.0520 -6.9731 -2.2887 18 7 1.0069 -8.8658 -1.7918 19 6 0.0863 -9.5750 -0.8857 20 6 0.5516 -11.0313 -0.7724 21 8 0.6906 -11.5888 -2.0814 22 6 1.6870 -10.9493 -2.8861 23 6 1.3111 -9.4845 -3.0826 24 6 2.4487 -8.7253 -3.7866 25 6 1.8020 -8.2253 -5.0995 26 8 0.3855 -8.1768 -4.8189 27 6 0.1091 -9.3591 -4.0339 28 6 1.4551 -4.7445 0.0026 29 1 -0.4850 0.8400 0.0004 30 1 3.9181 -2.4650 0.4314 31 1 5.2453 -4.5268 0.6391 32 1 4.1496 -6.7229 0.4492 33 1 0.5093 -7.1732 0.3482 34 1 2.0788 -7.9726 0.6048 35 1 -0.9253 -9.5426 -1.2903 36 1 0.1046 -9.1055 0.0979 37 1 1.5119 -11.0673 -0.2579 38 1 -0.1843 -11.6053 -0.2091 39 1 1.7438 -11.4437 -3.8559 40 1 2.6539 -11.0132 -2.3871 41 1 2.7807 -7.8836 -3.1788 42 1 3.2820 -9.3950 -3.9988 43 1 2.1732 -7.2317 -5.3508 44 1 2.0042 -8.9234 -5.9119 45 1 0.0415 -10.2357 -4.6782 46 1 -0.8128 -9.2315 -3.4665 47 1 0.3919 -4.8068 -0.1762 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194436643.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:18 Heat of formation + Delta-G solvation = -102.016012 kcal Electronic energy + Delta-G solvation = -31375.608177 eV Core-core repulsion = 27104.211805 eV Total energy + Delta-G solvation = -4271.396372 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.43988 -40.81587 -39.73232 -39.06646 -38.16202 -35.83774 -34.40388 -34.09282 -33.00878 -30.90632 -30.62481 -29.68928 -28.27616 -27.23393 -26.77867 -24.70773 -23.51429 -23.12746 -23.00038 -21.91279 -20.03300 -19.45330 -18.76160 -18.37522 -17.92548 -17.33288 -17.07871 -16.78384 -16.65213 -16.41434 -16.19141 -16.12105 -15.82383 -15.69118 -15.52715 -15.45546 -14.95783 -14.72694 -14.37055 -13.97294 -13.95728 -13.79838 -13.54469 -13.16730 -13.05690 -12.96965 -12.65606 -12.60185 -12.42558 -12.36087 -12.27284 -12.20909 -12.14293 -12.10508 -11.79013 -11.23566 -11.22136 -10.81737 -10.77891 -9.88128 -9.65130 -9.44221 -8.97101 -8.47661 -6.16085 0.51306 0.76205 1.33021 1.42752 1.43473 1.51005 1.78632 2.17111 2.78624 2.81913 2.95426 3.14347 3.40676 3.43559 3.64247 3.73989 3.76510 3.88314 3.98207 4.09975 4.17894 4.22284 4.23482 4.27225 4.31903 4.39000 4.46858 4.49731 4.56236 4.58788 4.60811 4.69346 4.74313 4.76887 4.83037 4.86543 4.93642 5.05879 5.12084 5.20915 5.30526 5.65204 5.72332 5.74250 5.75547 5.86714 6.02349 6.07261 6.21560 6.34231 6.96971 7.14307 7.79091 8.76036 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017005 B = 0.002596 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.217401 B =10781.194704 C =11287.573515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.251 1.251 7 C -0.413 4.413 8 H 0.099 0.901 9 O -0.236 6.236 10 C 0.112 3.888 11 C -0.246 4.246 12 C -0.073 4.073 13 C -0.177 4.177 14 C -0.024 4.024 15 C -0.091 4.091 16 C 0.517 3.483 17 O -0.531 6.531 18 N -0.608 5.608 19 C 0.062 3.938 20 C 0.046 3.954 21 O -0.389 6.389 22 C 0.074 3.926 23 C 0.113 3.887 24 C -0.228 4.228 25 C 0.055 3.945 26 O -0.406 6.406 27 C 0.042 3.958 28 C -0.192 4.192 29 H 0.272 0.728 30 H 0.116 0.884 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.118 0.882 34 H 0.145 0.855 35 H 0.079 0.921 36 H 0.123 0.877 37 H 0.070 0.930 38 H 0.133 0.867 39 H 0.122 0.878 40 H 0.071 0.929 41 H 0.152 0.848 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.278 -27.504 -0.998 28.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.175 1.175 7 C -0.489 4.489 8 H 0.116 0.884 9 O -0.143 6.143 10 C 0.062 3.938 11 C -0.265 4.265 12 C -0.091 4.091 13 C -0.195 4.195 14 C -0.024 4.024 15 C -0.130 4.130 16 C 0.309 3.691 17 O -0.411 6.411 18 N -0.342 5.342 19 C -0.059 4.059 20 C -0.031 4.031 21 O -0.307 6.307 22 C -0.003 4.003 23 C 0.027 3.973 24 C -0.264 4.264 25 C -0.022 4.022 26 O -0.325 6.325 27 C -0.036 4.036 28 C -0.212 4.212 29 H 0.081 0.919 30 H 0.134 0.866 31 H 0.163 0.837 32 H 0.167 0.833 33 H 0.136 0.864 34 H 0.163 0.837 35 H 0.097 0.903 36 H 0.141 0.859 37 H 0.088 0.912 38 H 0.150 0.850 39 H 0.140 0.860 40 H 0.089 0.911 41 H 0.167 0.833 42 H 0.110 0.890 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.853 -26.966 -1.573 27.445 hybrid contribution 0.093 1.459 -0.216 1.477 sum 4.946 -25.508 -1.789 26.044 Atomic orbital electron populations 1.70187 1.08037 1.28753 1.49067 1.26606 0.96882 1.02752 0.95901 0.84589 0.77890 0.74533 0.79190 1.19048 1.19319 1.17483 1.21792 0.92412 0.81535 1.53174 0.88360 1.83942 1.35926 1.12651 1.81763 1.19888 0.91766 0.87826 0.94327 1.21296 0.93637 1.00186 1.11374 1.21132 1.00022 0.91452 0.96456 1.20946 0.93668 0.97914 1.07010 1.19128 0.93857 0.92647 0.96795 1.20780 1.04367 0.94548 0.93293 1.20925 0.77097 0.79933 0.91147 1.90200 1.47241 1.51981 1.51678 1.47839 1.47309 1.20822 1.18242 1.22863 0.93187 0.94146 0.95717 1.23195 1.03282 0.92320 0.84315 1.88014 1.58662 1.57446 1.26564 1.22898 0.91668 0.88132 0.97653 1.22113 0.95739 0.95256 0.84205 1.24701 0.97730 1.05333 0.98653 1.23363 0.80180 1.01578 0.97039 1.89159 1.25603 1.44735 1.73019 1.23813 0.98316 0.88672 0.92789 1.20194 0.99671 0.90291 1.11014 0.91861 0.86635 0.83704 0.83335 0.86384 0.83742 0.90299 0.85910 0.91152 0.84956 0.85968 0.91125 0.83300 0.89018 0.91074 0.90569 0.89499 0.89738 0.87983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.49 13.67 21.61 0.30 -58.19 16 2 C -0.02 -1.43 5.49 84.83 0.47 -0.97 16 3 Si 1.02 44.41 29.55 68.60 2.03 46.44 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 7 C -0.41 -25.14 9.44 67.92 0.64 -24.50 16 8 H 0.10 5.52 5.29 -2.91 -0.02 5.51 16 9 O -0.24 -14.93 9.76 -22.77 -0.22 -15.15 16 10 C 0.11 5.89 6.65 22.58 0.15 6.04 16 11 C -0.25 -11.25 9.13 22.39 0.20 -11.05 16 12 C -0.07 -2.57 10.04 22.25 0.22 -2.35 16 13 C -0.18 -5.51 9.70 22.30 0.22 -5.30 16 14 C -0.02 -0.79 4.37 -19.88 -0.09 -0.88 16 15 C -0.09 -2.00 4.41 29.10 0.13 -1.87 16 16 C 0.52 13.46 7.30 87.66 0.64 14.10 16 17 O -0.53 -18.98 12.28 -3.05 -0.04 -19.02 16 18 N -0.61 -11.78 2.70 -770.40 -2.08 -13.86 16 19 C 0.06 0.71 6.31 86.32 0.54 1.26 16 20 C 0.05 0.37 6.96 72.09 0.50 0.88 16 21 O -0.39 -5.12 10.69 -148.98 -1.59 -6.71 16 22 C 0.07 0.95 5.43 71.82 0.39 1.33 16 23 C 0.11 2.15 0.97 4.02 0.00 2.16 16 24 C -0.23 -5.16 5.71 31.43 0.18 -4.98 16 25 C 0.05 1.38 7.65 72.55 0.55 1.94 16 26 O -0.41 -12.40 11.66 -148.98 -1.74 -14.14 16 27 C 0.04 0.91 6.76 72.25 0.49 1.40 16 28 C -0.19 -8.63 9.65 22.39 0.22 -8.41 16 29 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 30 H 0.12 5.39 5.72 -2.91 -0.02 5.38 16 31 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 32 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 33 H 0.12 2.21 7.33 -2.39 -0.02 2.19 16 34 H 0.14 1.89 8.08 -2.39 -0.02 1.87 16 35 H 0.08 0.95 7.52 -2.39 -0.02 0.94 16 36 H 0.12 0.85 6.06 -2.39 -0.01 0.84 16 37 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.13 0.47 8.14 -2.38 -0.02 0.45 16 39 H 0.12 1.17 7.91 -2.39 -0.02 1.15 16 40 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.15 4.49 3.57 -113.74 -0.41 4.09 16 42 H 0.09 1.54 7.72 -2.39 -0.02 1.52 16 43 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 45 H 0.09 1.50 7.70 -2.38 -0.02 1.48 16 46 H 0.08 1.90 7.22 -2.39 -0.02 1.88 16 47 H 0.10 4.65 8.06 -2.92 -0.02 4.63 16 Total: -1.00 -85.91 374.92 2.72 -83.19 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: 0.60 Total: 28.63 kcal Atomic # 6 Polarization: -36.66 SS G_CDS: 5.46 Total: -31.20 kcal Atomic # 7 Polarization: -70.26 SS G_CDS: -1.79 Total: -72.05 kcal Atomic # 8 Polarization: -51.43 SS G_CDS: -3.59 Total: -55.02 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -85.91 2.72 -83.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194436643.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.826 kcal (2) G-P(sol) polarization free energy of solvation -85.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds