Wall clock time and date at job start Wed Apr 1 2020 04:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86795 * 120.00081 * 2 1 4 4 H 1.48504 * 109.47035 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.47354 * 119.99838 * 3 2 1 6 6 H 1.48501 * 109.47265 * 240.00264 * 3 2 1 7 7 C 1.40229 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99976 * 154.30872 * 7 2 1 9 9 C 1.41106 * 120.00236 * 334.30447 * 7 2 1 10 10 C 1.40884 * 120.10220 * 334.45985 * 9 7 2 11 11 C 1.36324 * 119.88935 * 179.73576 * 10 9 7 12 12 C 1.40013 * 120.10565 * 0.51184 * 11 10 9 13 13 C 1.47636 * 119.89570 * 179.74006 * 12 11 10 14 14 O 1.21587 * 120.00196 * 180.02562 * 13 12 11 15 15 N 1.34779 * 120.00041 * 0.02562 * 13 12 11 16 16 C 1.46505 * 120.00272 * 180.02562 * 15 13 12 17 17 C 1.52989 * 109.47170 * 179.97438 * 16 15 13 18 18 H 1.08994 * 110.64520 * 305.70170 * 17 16 15 19 19 C 1.54478 * 110.71730 * 182.56748 * 17 16 15 20 20 O 1.43983 * 105.07675 * 219.90051 * 19 17 16 21 21 C 1.43378 * 106.99322 * 358.68631 * 20 19 17 22 22 C 1.52770 * 110.15514 * 265.27851 * 21 20 19 23 23 C 1.53165 * 109.17670 * 294.37342 * 22 21 20 24 24 O 1.42909 * 109.37198 * 303.08435 * 23 22 21 25 25 C 1.42908 * 114.19254 * 61.49405 * 24 23 22 26 26 C 1.52781 * 110.13620 * 143.73663 * 21 20 19 27 27 O 1.44151 * 106.84511 * 24.39308 * 21 20 19 28 28 C 1.40013 * 120.20707 * 359.76170 * 12 11 10 29 29 C 1.36316 * 120.11086 * 359.97438 * 28 12 11 30 30 H 0.97008 * 119.99861 * 174.24689 * 1 2 3 31 31 H 1.07997 * 120.05433 * 359.97438 * 10 9 7 32 32 H 1.08000 * 119.94476 * 180.27369 * 11 10 9 33 33 H 0.96997 * 119.99997 * 359.97438 * 15 13 12 34 34 H 1.09005 * 109.46751 * 300.00406 * 16 15 13 35 35 H 1.09005 * 109.46566 * 59.99807 * 16 15 13 36 36 H 1.08997 * 110.32089 * 338.79432 * 19 17 16 37 37 H 1.08995 * 110.32222 * 100.99876 * 19 17 16 38 38 H 1.08990 * 109.51905 * 54.28396 * 22 21 20 39 39 H 1.09005 * 109.51350 * 174.46606 * 22 21 20 40 40 H 1.09004 * 109.48851 * 183.11729 * 23 22 21 41 41 H 1.09005 * 109.49125 * 63.05129 * 23 22 21 42 42 H 1.09000 * 109.48819 * 178.53816 * 25 24 23 43 43 H 1.08991 * 109.49375 * 58.46606 * 25 24 23 44 44 H 1.09004 * 109.51771 * 185.53251 * 26 21 20 45 45 H 1.09001 * 109.51947 * 305.64887 * 26 21 20 46 46 H 1.08003 * 119.94191 * 180.02562 * 28 12 11 47 47 H 1.07996 * 120.05378 * 180.02562 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 1.2754 2.7464 0.0006 5 1 3.0942 1.6964 1.2125 6 1 3.0942 1.6964 -1.2125 7 6 2.0075 -1.2144 -0.0005 8 1 3.0075 -1.2605 -0.4061 9 6 1.4067 -2.3763 0.5288 10 6 0.3978 -2.2674 1.5061 11 6 -0.1835 -3.3926 2.0106 12 6 0.2280 -4.6551 1.5668 13 6 -0.4007 -5.8708 2.1205 14 8 -0.0445 -6.9681 1.7368 15 7 -1.3696 -5.7641 3.0513 16 6 -1.9932 -6.9704 3.6012 17 6 -3.0527 -6.5727 4.6308 18 1 -2.6233 -5.9216 5.3921 19 6 -3.6846 -7.8258 5.2765 20 8 -5.0865 -7.5195 5.3948 21 6 -5.2682 -6.1881 4.8947 22 6 -5.2255 -5.1834 6.0448 23 6 -6.4280 -5.4193 6.9637 24 8 -7.6334 -5.3172 6.2028 25 6 -7.7465 -6.2803 5.1530 26 6 -6.6011 -6.0812 4.1558 27 8 -4.1802 -5.9316 3.9845 28 6 1.2343 -4.7684 0.5999 29 6 1.8177 -3.6489 0.0856 30 1 -0.4850 -0.8359 -0.0842 31 1 0.0828 -1.2941 1.8522 32 1 -0.9601 -3.3100 2.7566 33 1 -1.6536 -4.8887 3.3577 34 1 -2.4624 -7.5360 2.7962 35 1 -1.2326 -7.5856 4.0820 36 1 -3.5400 -8.6955 4.6357 37 1 -3.2516 -8.0036 6.2608 38 1 -4.3034 -5.3163 6.6104 39 1 -5.2659 -4.1702 5.6449 40 1 -6.4332 -4.6699 7.7554 41 1 -6.3594 -6.4139 7.4045 42 1 -8.7004 -6.1505 4.6418 43 1 -7.6925 -7.2844 5.5733 44 1 -6.6849 -5.0962 3.6966 45 1 -6.6519 -6.8486 3.3834 46 1 1.5481 -5.7445 0.2603 47 1 2.5935 -3.7374 -0.6605 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272249406.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:34 Heat of formation + Delta-G solvation = -165.447668 kcal Electronic energy + Delta-G solvation = -30254.676070 eV Core-core repulsion = 25980.529095 eV Total energy + Delta-G solvation = -4274.146975 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.43694 -39.25394 -38.62976 -37.38745 -35.57027 -34.53940 -34.08430 -32.77538 -31.63463 -30.70561 -29.65281 -29.45029 -26.47203 -25.07749 -24.50090 -24.22623 -22.33147 -21.81560 -20.99992 -20.58307 -19.68853 -18.16601 -17.56122 -17.33087 -17.12458 -16.41804 -16.22448 -15.86055 -15.47692 -15.38631 -14.80569 -14.67330 -14.34405 -14.24998 -14.09416 -13.74215 -13.70535 -13.33531 -13.24273 -12.78756 -12.70151 -12.51977 -12.42494 -12.34554 -12.05173 -11.95214 -11.84822 -11.72989 -11.43498 -11.21051 -10.99591 -10.86060 -10.54688 -10.54047 -10.08760 -9.93221 -9.91893 -9.74663 -9.24080 -9.11423 -8.75922 -7.97923 -7.77110 -7.47022 -4.73014 2.12796 2.81767 3.00392 3.01818 3.04884 3.22811 3.35443 3.48608 3.58442 3.76410 3.81881 4.12831 4.26563 4.37623 4.40918 4.46405 4.51912 4.62911 4.77941 4.84607 5.00285 5.06132 5.13346 5.23654 5.29316 5.29640 5.34768 5.45033 5.51342 5.56856 5.66401 5.73093 5.78315 5.86281 5.97904 6.13570 6.57606 6.63736 6.74488 6.79495 6.82196 6.89096 7.17167 7.40325 7.52138 7.53922 7.63003 7.91524 8.06990 8.10076 8.48790 8.59836 8.94364 9.73752 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013378 B = 0.002290 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.532647 B =12226.232302 C =13823.932892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.036 3.964 3 Si 1.067 2.933 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.493 4.493 8 H 0.083 0.917 9 C 0.109 3.891 10 C -0.231 4.231 11 C -0.041 4.041 12 C -0.295 4.295 13 C 0.574 3.426 14 O -0.575 6.575 15 N -0.739 5.739 16 C 0.133 3.867 17 C 0.032 3.968 18 H 0.091 0.909 19 C 0.030 3.970 20 O -0.374 6.374 21 C 0.254 3.746 22 C -0.187 4.187 23 C 0.068 3.932 24 O -0.382 6.382 25 C 0.067 3.933 26 C -0.145 4.145 27 O -0.352 6.352 28 C -0.014 4.014 29 C -0.239 4.239 30 H 0.304 0.696 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.400 0.600 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.058 0.942 42 H 0.101 0.899 43 H 0.060 0.940 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.103 0.897 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.702 -8.074 12.763 19.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.189 4.189 3 Si 0.890 3.110 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.519 4.519 8 H 0.101 0.899 9 C 0.105 3.895 10 C -0.250 4.250 11 C -0.060 4.060 12 C -0.300 4.300 13 C 0.369 3.631 14 O -0.458 6.458 15 N -0.393 5.393 16 C 0.009 3.991 17 C -0.026 4.026 18 H 0.109 0.891 19 C -0.047 4.047 20 O -0.295 6.295 21 C 0.177 3.823 22 C -0.225 4.225 23 C -0.008 4.008 24 O -0.301 6.301 25 C -0.010 4.010 26 C -0.183 4.183 27 O -0.273 6.273 28 C -0.033 4.033 29 C -0.259 4.259 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.108 0.892 33 H 0.235 0.765 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.077 0.923 42 H 0.119 0.881 43 H 0.078 0.922 44 H 0.112 0.888 45 H 0.108 0.892 46 H 0.121 0.879 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.048 -7.094 12.456 18.725 hybrid contribution 0.484 -1.444 0.138 1.529 sum -11.564 -8.538 12.594 19.111 Atomic orbital electron populations 1.70394 1.08359 1.34876 1.25749 1.27283 0.95632 1.04773 0.91239 0.83596 0.75732 0.73357 0.78352 1.19556 1.19669 1.19772 1.20886 1.03207 0.94036 1.33782 0.89867 1.17822 0.89965 0.92736 0.88947 1.20824 1.04475 0.97158 1.02576 1.20413 0.96476 0.92407 0.96714 1.18800 1.09064 0.90903 1.11207 1.18530 0.77678 0.89612 0.77286 1.90638 1.64536 1.28913 1.61673 1.45787 1.40581 1.08565 1.44350 1.21175 0.93152 0.89109 0.95669 1.24132 0.89098 0.93647 0.95701 0.89141 1.23943 0.80983 0.98017 1.01796 1.88854 1.24610 1.31570 1.84435 1.23291 0.89591 0.82284 0.87162 1.22951 1.00683 1.00923 0.97980 1.22506 0.83071 1.02132 0.93135 1.87932 1.39484 1.56261 1.46392 1.22568 0.98020 0.92626 0.87778 1.22244 0.91835 1.05010 0.99230 1.89603 1.17624 1.75671 1.44375 1.20392 0.92759 0.97417 0.92757 1.20669 1.06892 0.92331 1.05970 0.88194 0.87390 0.89160 0.76478 0.90767 0.90125 0.89129 0.89326 0.90108 0.88839 0.88365 0.92333 0.88087 0.92191 0.88796 0.89171 0.87934 0.88272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.08 12.31 55.56 0.68 -18.40 16 2 C 0.04 0.84 4.93 -17.31 -0.09 0.75 16 3 Si 1.07 19.81 30.01 -169.99 -5.10 14.71 16 4 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 5 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 6 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 7 C -0.49 -12.21 8.98 -37.75 -0.34 -12.55 16 8 H 0.08 1.99 7.97 -52.48 -0.42 1.57 16 9 C 0.11 2.74 5.30 -106.81 -0.57 2.17 16 10 C -0.23 -5.54 7.89 -39.27 -0.31 -5.85 16 11 C -0.04 -0.89 9.47 -39.61 -0.38 -1.27 16 12 C -0.30 -6.66 5.89 -104.73 -0.62 -7.28 16 13 C 0.57 12.02 7.76 -12.42 -0.10 11.92 16 14 O -0.58 -13.46 16.32 5.29 0.09 -13.37 16 15 N -0.74 -12.12 5.50 -61.31 -0.34 -12.46 16 16 C 0.13 1.76 5.30 -4.04 -0.02 1.73 16 17 C 0.03 0.34 2.97 -25.96 -0.08 0.26 16 18 H 0.09 0.83 7.50 -51.93 -0.39 0.44 16 19 C 0.03 0.26 7.64 37.93 0.29 0.55 16 20 O -0.37 -3.87 10.20 -59.24 -0.60 -4.47 16 21 C 0.25 2.66 1.06 -26.96 -0.03 2.64 16 22 C -0.19 -1.69 5.26 -26.76 -0.14 -1.83 16 23 C 0.07 0.57 6.73 37.24 0.25 0.82 16 24 O -0.38 -3.84 10.75 -35.23 -0.38 -4.22 16 25 C 0.07 0.57 6.73 37.25 0.25 0.82 16 26 C -0.15 -1.40 5.56 -26.76 -0.15 -1.55 16 27 O -0.35 -4.41 10.95 -59.24 -0.65 -5.06 16 28 C -0.01 -0.33 9.52 -39.61 -0.38 -0.71 16 29 C -0.24 -5.76 9.73 -39.27 -0.38 -6.14 16 30 H 0.30 7.74 6.71 -40.82 -0.27 7.47 16 31 H 0.11 2.62 6.49 -52.49 -0.34 2.28 16 32 H 0.09 1.67 6.37 -52.49 -0.33 1.34 16 33 H 0.40 6.06 6.47 -40.82 -0.26 5.80 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.09 0.74 7.85 -51.93 -0.41 0.34 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.64 7.22 -51.93 -0.37 0.27 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.47 7.93 -51.93 -0.41 0.06 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.50 7.93 -51.93 -0.41 0.09 16 44 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.10 2.32 7.63 -52.48 -0.40 1.92 16 47 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 381.36 15.07 5.75 5.75 Total: -1.00 -29.93 381.36 -9.95 -39.88 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -6.63 Total: 13.15 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -2.77 Total: -15.50 kcal Atomic # 7 Polarization: -31.21 SS G_CDS: 0.35 Total: -30.86 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -1.55 Total: -27.12 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.10 Total: 14.71 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.93 -9.95 -39.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272249406.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.567 kcal (2) G-P(sol) polarization free energy of solvation -29.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds