Wall clock time and date at job start Wed Apr 1 2020 04:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86795 * 120.00081 * 2 1 4 4 H 1.48504 * 109.47035 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.47354 * 119.99838 * 3 2 1 6 6 H 1.48501 * 109.47265 * 240.00264 * 3 2 1 7 7 C 1.40229 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99976 * 154.30872 * 7 2 1 9 9 C 1.41106 * 120.00236 * 334.30447 * 7 2 1 10 10 C 1.40884 * 120.10220 * 334.45985 * 9 7 2 11 11 C 1.36324 * 119.88935 * 179.73576 * 10 9 7 12 12 C 1.40013 * 120.10565 * 0.51184 * 11 10 9 13 13 C 1.47636 * 119.89570 * 179.74006 * 12 11 10 14 14 O 1.21587 * 120.00196 * 180.02562 * 13 12 11 15 15 N 1.34779 * 120.00041 * 0.02562 * 13 12 11 16 16 C 1.46505 * 120.00272 * 180.02562 * 15 13 12 17 17 C 1.52989 * 109.47170 * 179.97438 * 16 15 13 18 18 H 1.08994 * 110.64520 * 305.70170 * 17 16 15 19 19 C 1.54478 * 110.71730 * 182.56748 * 17 16 15 20 20 O 1.43983 * 105.07675 * 219.90051 * 19 17 16 21 21 C 1.43378 * 106.99322 * 358.68631 * 20 19 17 22 22 C 1.52770 * 110.15514 * 265.27851 * 21 20 19 23 23 C 1.53165 * 109.17670 * 294.37342 * 22 21 20 24 24 O 1.42909 * 109.37198 * 303.08435 * 23 22 21 25 25 C 1.42908 * 114.19254 * 61.49405 * 24 23 22 26 26 C 1.52781 * 110.13620 * 143.73663 * 21 20 19 27 27 O 1.44151 * 106.84511 * 24.39308 * 21 20 19 28 28 C 1.40013 * 120.20707 * 359.76170 * 12 11 10 29 29 C 1.36316 * 120.11086 * 359.97438 * 28 12 11 30 30 H 0.97008 * 119.99861 * 174.24689 * 1 2 3 31 31 H 1.07997 * 120.05433 * 359.97438 * 10 9 7 32 32 H 1.08000 * 119.94476 * 180.27369 * 11 10 9 33 33 H 0.96997 * 119.99997 * 359.97438 * 15 13 12 34 34 H 1.09005 * 109.46751 * 300.00406 * 16 15 13 35 35 H 1.09005 * 109.46566 * 59.99807 * 16 15 13 36 36 H 1.08997 * 110.32089 * 338.79432 * 19 17 16 37 37 H 1.08995 * 110.32222 * 100.99876 * 19 17 16 38 38 H 1.08990 * 109.51905 * 54.28396 * 22 21 20 39 39 H 1.09005 * 109.51350 * 174.46606 * 22 21 20 40 40 H 1.09004 * 109.48851 * 183.11729 * 23 22 21 41 41 H 1.09005 * 109.49125 * 63.05129 * 23 22 21 42 42 H 1.09000 * 109.48819 * 178.53816 * 25 24 23 43 43 H 1.08991 * 109.49375 * 58.46606 * 25 24 23 44 44 H 1.09004 * 109.51771 * 185.53251 * 26 21 20 45 45 H 1.09001 * 109.51947 * 305.64887 * 26 21 20 46 46 H 1.08003 * 119.94191 * 180.02562 * 28 12 11 47 47 H 1.07996 * 120.05378 * 180.02562 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 1.2754 2.7464 0.0006 5 1 3.0942 1.6964 1.2125 6 1 3.0942 1.6964 -1.2125 7 6 2.0075 -1.2144 -0.0005 8 1 3.0075 -1.2605 -0.4061 9 6 1.4067 -2.3763 0.5288 10 6 0.3978 -2.2674 1.5061 11 6 -0.1835 -3.3926 2.0106 12 6 0.2280 -4.6551 1.5668 13 6 -0.4007 -5.8708 2.1205 14 8 -0.0445 -6.9681 1.7368 15 7 -1.3696 -5.7641 3.0513 16 6 -1.9932 -6.9704 3.6012 17 6 -3.0527 -6.5727 4.6308 18 1 -2.6233 -5.9216 5.3921 19 6 -3.6846 -7.8258 5.2765 20 8 -5.0865 -7.5195 5.3948 21 6 -5.2682 -6.1881 4.8947 22 6 -5.2255 -5.1834 6.0448 23 6 -6.4280 -5.4193 6.9637 24 8 -7.6334 -5.3172 6.2028 25 6 -7.7465 -6.2803 5.1530 26 6 -6.6011 -6.0812 4.1558 27 8 -4.1802 -5.9316 3.9845 28 6 1.2343 -4.7684 0.5999 29 6 1.8177 -3.6489 0.0856 30 1 -0.4850 -0.8359 -0.0842 31 1 0.0828 -1.2941 1.8522 32 1 -0.9601 -3.3100 2.7566 33 1 -1.6536 -4.8887 3.3577 34 1 -2.4624 -7.5360 2.7962 35 1 -1.2326 -7.5856 4.0820 36 1 -3.5400 -8.6955 4.6357 37 1 -3.2516 -8.0036 6.2608 38 1 -4.3034 -5.3163 6.6104 39 1 -5.2659 -4.1702 5.6449 40 1 -6.4332 -4.6699 7.7554 41 1 -6.3594 -6.4139 7.4045 42 1 -8.7004 -6.1505 4.6418 43 1 -7.6925 -7.2844 5.5733 44 1 -6.6849 -5.0962 3.6966 45 1 -6.6519 -6.8486 3.3834 46 1 1.5481 -5.7445 0.2603 47 1 2.5935 -3.7374 -0.6605 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272249406.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:33 Heat of formation + Delta-G solvation = -184.300210 kcal Electronic energy + Delta-G solvation = -30255.493577 eV Core-core repulsion = 25980.529095 eV Total energy + Delta-G solvation = -4274.964482 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.22489 -40.85956 -39.46340 -39.10539 -36.56014 -35.89782 -35.68976 -33.71100 -32.30025 -32.20125 -31.32996 -30.86129 -27.94218 -26.41629 -25.20818 -24.91095 -23.80781 -23.12612 -22.66458 -21.57359 -21.07417 -19.98976 -18.76942 -18.27655 -18.02709 -17.37644 -17.07026 -16.83767 -16.62441 -16.44413 -16.19697 -15.87931 -15.85273 -15.55622 -15.39683 -15.30524 -14.56875 -14.39242 -14.25768 -14.16865 -14.11154 -13.81932 -13.68255 -13.44861 -13.29503 -13.19584 -12.91389 -12.80859 -12.66369 -12.59466 -12.39011 -11.98879 -11.66241 -11.57165 -11.53980 -11.31049 -10.99538 -10.84227 -10.78385 -10.65186 -10.21025 -9.83073 -9.62832 -9.32660 -6.63213 0.32634 0.94364 1.50668 1.53976 1.81306 2.05274 2.13926 2.28075 2.30728 2.63515 2.69336 2.91182 3.30856 3.48052 3.49880 3.58415 3.63635 3.81298 3.86202 4.05405 4.13607 4.15063 4.18667 4.27571 4.31307 4.34773 4.46889 4.52133 4.58793 4.61808 4.69948 4.71767 4.74631 4.81842 4.92191 4.92896 5.00572 5.03506 5.05243 5.29772 5.40203 5.57002 5.64847 5.65158 5.79724 5.87651 6.06200 6.14428 6.21125 6.55258 6.63413 6.73791 7.31830 7.85656 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013378 B = 0.002290 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.532647 B =12226.232302 C =13823.932892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.006 3.994 3 Si 1.118 2.882 4 H -0.269 1.269 5 H -0.260 1.260 6 H -0.256 1.256 7 C -0.522 4.522 8 H 0.083 0.917 9 C 0.085 3.915 10 C -0.245 4.245 11 C -0.032 4.032 12 C -0.300 4.300 13 C 0.574 3.426 14 O -0.602 6.602 15 N -0.723 5.723 16 C 0.131 3.869 17 C 0.037 3.963 18 H 0.110 0.890 19 C 0.030 3.970 20 O -0.381 6.381 21 C 0.248 3.752 22 C -0.184 4.184 23 C 0.067 3.933 24 O -0.399 6.399 25 C 0.069 3.931 26 C -0.148 4.148 27 O -0.379 6.379 28 C -0.024 4.024 29 C -0.252 4.252 30 H 0.289 0.711 31 H 0.101 0.899 32 H 0.125 0.875 33 H 0.408 0.592 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.114 0.886 41 H 0.063 0.937 42 H 0.117 0.883 43 H 0.062 0.938 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.107 0.893 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.197 -8.089 14.635 20.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.214 4.214 3 Si 0.934 3.066 4 H -0.194 1.194 5 H -0.185 1.185 6 H -0.180 1.180 7 C -0.548 4.548 8 H 0.101 0.899 9 C 0.082 3.918 10 C -0.265 4.265 11 C -0.051 4.051 12 C -0.304 4.304 13 C 0.367 3.633 14 O -0.487 6.487 15 N -0.375 5.375 16 C 0.008 3.992 17 C -0.021 4.021 18 H 0.127 0.873 19 C -0.047 4.047 20 O -0.302 6.302 21 C 0.172 3.828 22 C -0.222 4.222 23 C -0.010 4.010 24 O -0.318 6.318 25 C -0.007 4.007 26 C -0.186 4.186 27 O -0.300 6.300 28 C -0.044 4.044 29 C -0.272 4.272 30 H 0.102 0.898 31 H 0.119 0.881 32 H 0.142 0.858 33 H 0.244 0.756 34 H 0.079 0.921 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.136 0.864 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.132 0.868 41 H 0.081 0.919 42 H 0.135 0.865 43 H 0.080 0.920 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.125 0.875 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.572 -7.132 14.353 20.370 hybrid contribution 0.576 -1.615 -0.417 1.765 sum -11.997 -8.748 13.936 20.364 Atomic orbital electron populations 1.70507 1.09031 1.33863 1.27679 1.28655 0.95592 1.07627 0.89536 0.82985 0.74837 0.69361 0.79404 1.19358 1.18494 1.18037 1.21104 1.03561 0.94953 1.35200 0.89852 1.18153 0.90719 0.93333 0.89626 1.20851 1.05019 0.97586 1.03005 1.20663 0.96468 0.91350 0.96644 1.19126 1.08565 0.92105 1.10616 1.18307 0.78471 0.88462 0.78014 1.90625 1.65681 1.29531 1.62841 1.45651 1.38921 1.10268 1.42673 1.21365 0.94110 0.87723 0.96025 1.24157 0.88091 0.94885 0.94928 0.87260 1.24085 0.80210 0.97080 1.03303 1.88844 1.25474 1.31516 1.84399 1.23456 0.89194 0.82729 0.87449 1.22931 1.01687 0.99941 0.97651 1.22635 0.82224 1.02969 0.93138 1.87911 1.40296 1.56801 1.46790 1.22634 0.98274 0.92476 0.87351 1.22279 0.92274 1.04513 0.99544 1.89580 1.18686 1.76074 1.45640 1.20559 0.93196 0.97393 0.93208 1.20814 1.07444 0.92424 1.06478 0.89793 0.88065 0.85772 0.75578 0.92065 0.88719 0.88804 0.86440 0.88790 0.89638 0.86764 0.91898 0.86535 0.91959 0.89509 0.89393 0.87528 0.87737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.52 12.31 21.87 0.27 -39.26 16 2 C 0.01 0.27 4.93 85.35 0.42 0.69 16 3 Si 1.12 39.22 30.01 68.60 2.06 41.28 16 4 H -0.27 -9.29 7.11 99.48 0.71 -8.59 16 5 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 6 H -0.26 -8.26 7.11 99.48 0.71 -7.56 16 7 C -0.52 -26.31 8.98 23.46 0.21 -26.10 16 8 H 0.08 4.06 7.97 -2.91 -0.02 4.03 16 9 C 0.09 4.37 5.30 -21.28 -0.11 4.26 16 10 C -0.25 -11.87 7.89 22.47 0.18 -11.69 16 11 C -0.03 -1.38 9.47 22.25 0.21 -1.17 16 12 C -0.30 -13.37 5.89 -19.94 -0.12 -13.49 16 13 C 0.57 23.44 7.76 86.72 0.67 24.11 16 14 O -0.60 -27.78 16.32 -3.99 -0.07 -27.84 16 15 N -0.72 -22.38 5.50 -466.16 -2.57 -24.95 16 16 C 0.13 3.20 5.30 86.37 0.46 3.65 16 17 C 0.04 0.68 2.97 31.09 0.09 0.77 16 18 H 0.11 1.63 7.50 -2.39 -0.02 1.61 16 19 C 0.03 0.44 7.64 72.48 0.55 0.99 16 20 O -0.38 -7.05 10.20 -126.02 -1.29 -8.33 16 21 C 0.25 4.81 1.06 30.44 0.03 4.84 16 22 C -0.18 -2.95 5.26 30.57 0.16 -2.79 16 23 C 0.07 0.98 6.73 72.04 0.48 1.46 16 24 O -0.40 -7.40 10.75 -148.98 -1.60 -9.00 16 25 C 0.07 1.08 6.73 72.04 0.48 1.57 16 26 C -0.15 -2.72 5.56 30.58 0.17 -2.55 16 27 O -0.38 -8.88 10.95 -126.02 -1.38 -10.26 16 28 C -0.02 -1.15 9.52 22.25 0.21 -0.94 16 29 C -0.25 -12.39 9.73 22.47 0.22 -12.17 16 30 H 0.29 15.14 6.71 -92.70 -0.62 14.52 16 31 H 0.10 4.98 6.49 -2.91 -0.02 4.97 16 32 H 0.12 4.35 6.37 -2.91 -0.02 4.33 16 33 H 0.41 11.39 6.47 -92.71 -0.60 10.79 16 34 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.09 1.32 7.85 -2.39 -0.02 1.30 16 37 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.09 1.23 7.22 -2.39 -0.02 1.21 16 39 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 41 H 0.06 0.87 7.93 -2.38 -0.02 0.85 16 42 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.06 0.94 7.93 -2.39 -0.02 0.92 16 44 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 45 H 0.09 1.60 8.14 -2.39 -0.02 1.59 16 46 H 0.11 4.87 7.63 -2.91 -0.02 4.84 16 47 H 0.10 4.86 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -64.93 381.36 0.30 -64.62 By element: Atomic # 1 Polarization: 41.75 SS G_CDS: 0.55 Total: 42.30 kcal Atomic # 6 Polarization: -32.89 SS G_CDS: 4.33 Total: -28.56 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: -2.30 Total: -64.20 kcal Atomic # 8 Polarization: -51.10 SS G_CDS: -4.33 Total: -55.44 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.06 Total: 41.28 kcal Total: -64.93 0.30 -64.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272249406.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.677 kcal (2) G-P(sol) polarization free energy of solvation -64.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds