Wall clock time and date at job start Wed Apr 1 2020 04:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99829 * 2 1 4 4 H 1.48496 * 109.47178 * 239.99631 * 3 2 1 5 5 H 1.48501 * 109.47209 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46660 * 120.00012 * 3 2 1 7 7 C 1.38716 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99701 * 179.97438 * 7 2 1 9 9 O 1.34780 * 119.99985 * 0.02562 * 7 2 1 10 10 C 1.35570 * 117.00071 * 185.05788 * 9 7 2 11 11 C 1.39183 * 119.89904 * 354.44279 * 10 9 7 12 12 C 1.37596 * 120.10293 * 180.02562 * 11 10 9 13 13 C 1.40025 * 119.89676 * 0.02562 * 12 11 10 14 14 C 1.46956 * 120.09960 * 179.97438 * 13 12 11 15 15 C 1.35025 * 120.00186 * 179.97438 * 14 13 12 16 16 C 1.46255 * 120.00133 * 179.97438 * 15 14 13 17 17 O 1.21723 * 119.99891 * 0.02562 * 16 15 14 18 18 N 1.34778 * 119.99878 * 179.97438 * 16 15 14 19 19 C 1.46497 * 119.99788 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47080 * 179.97438 * 19 18 16 21 21 H 1.09003 * 110.33118 * 57.75378 * 20 19 18 22 22 C 1.54481 * 110.37476 * 180.02562 * 20 19 18 23 23 C 1.54510 * 104.06192 * 142.92182 * 22 20 19 24 24 C 1.54475 * 104.06326 * 0.02562 * 23 22 20 25 25 H 1.08999 * 110.37436 * 94.85321 * 24 23 22 26 26 C 1.52998 * 110.36996 * 217.07604 * 24 23 22 27 27 O 1.42907 * 109.47049 * 183.45135 * 26 24 23 28 28 O 1.44420 * 104.90176 * 335.96200 * 24 23 22 29 29 C 1.40027 * 119.79907 * 0.25031 * 13 12 11 30 30 C 1.37597 * 119.89413 * 359.49214 * 29 13 12 31 31 H 0.97003 * 120.00012 * 0.02562 * 1 2 3 32 32 H 1.08003 * 119.94552 * 359.97438 * 11 10 9 33 33 H 1.07995 * 120.04823 * 180.02562 * 12 11 10 34 34 H 1.08006 * 119.99891 * 359.97438 * 14 13 12 35 35 H 1.07993 * 119.99728 * 0.02562 * 15 14 13 36 36 H 0.96996 * 119.99917 * 359.97438 * 18 16 15 37 37 H 1.09001 * 109.47288 * 60.00544 * 19 18 16 38 38 H 1.08994 * 109.47707 * 300.00095 * 19 18 16 39 39 H 1.09001 * 110.51061 * 24.28249 * 22 20 19 40 40 H 1.09002 * 110.62923 * 261.62947 * 22 20 19 41 41 H 1.08997 * 110.51124 * 241.35417 * 23 22 20 42 42 H 1.09005 * 110.50898 * 118.64704 * 23 22 20 43 43 H 1.08996 * 109.47076 * 303.44718 * 26 24 23 44 44 H 1.08997 * 109.47093 * 63.45514 * 26 24 23 45 45 H 0.96695 * 113.99870 * 180.02562 * 27 26 24 46 46 H 1.08000 * 120.04703 * 179.74713 * 29 13 12 47 47 H 1.08006 * 119.94849 * 180.27211 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0087 -1.2013 -0.0005 8 1 3.0887 -1.2013 -0.0010 9 8 1.3348 -2.3685 -0.0016 10 6 2.0690 -3.5033 0.1044 11 6 3.4590 -3.4340 0.0912 12 6 4.2084 -4.5830 0.1980 13 6 3.5703 -5.8235 0.3196 14 6 4.3663 -7.0536 0.4334 15 6 3.7490 -8.2488 0.5511 16 6 4.5411 -9.4730 0.6637 17 8 5.7569 -9.4146 0.6519 18 7 3.9249 -10.6659 0.7817 19 6 4.7184 -11.8922 0.8940 20 6 3.7820 -13.0961 1.0157 21 1 3.1132 -13.1441 0.1564 22 6 4.5981 -14.4022 1.1362 23 6 3.7869 -15.2613 2.1318 24 6 2.5764 -14.3729 2.4945 25 1 1.7232 -14.6173 1.8617 26 6 2.2110 -14.5472 3.9700 27 8 1.0420 -13.7801 4.2651 28 8 3.0187 -13.0214 2.2424 29 6 2.1716 -5.8889 0.3266 30 6 1.4306 -4.7341 0.2246 31 1 -0.4850 0.8401 -0.0004 32 1 3.9502 -2.4768 -0.0039 33 1 5.2869 -4.5282 0.1880 34 1 5.4450 -7.0018 0.4229 35 1 2.6703 -8.3006 0.5612 36 1 2.9561 -10.7123 0.7923 37 1 5.3526 -11.8349 1.7787 38 1 5.3415 -12.0044 0.0069 39 1 5.5927 -14.1960 1.5318 40 1 4.6686 -14.9015 0.1698 41 1 4.3804 -15.4799 3.0195 42 1 3.4542 -16.1843 1.6569 43 1 2.0158 -15.6000 4.1740 44 1 3.0375 -14.2037 4.5920 45 1 0.7522 -13.8431 5.1855 46 1 1.6754 -6.8440 0.4161 47 1 0.3517 -4.7831 0.2344 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294494013.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:21 Heat of formation + Delta-G solvation = -122.963975 kcal Electronic energy + Delta-G solvation = -28209.320814 eV Core-core repulsion = 23937.016071 eV Total energy + Delta-G solvation = -4272.304744 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.29292 -39.36585 -39.02313 -37.03527 -36.83533 -34.79839 -33.15818 -32.67035 -32.27292 -31.29707 -30.38961 -28.54967 -27.31978 -25.63890 -24.25124 -22.81965 -22.11697 -21.88509 -21.49285 -20.61382 -19.25523 -18.13333 -17.90015 -17.12798 -17.03081 -16.88113 -16.58041 -16.12679 -15.42218 -14.89594 -14.80496 -14.73602 -14.38095 -14.29132 -14.18958 -13.94022 -13.78675 -13.41117 -13.12885 -12.98251 -12.82756 -12.55387 -12.28073 -12.14958 -11.89637 -11.80028 -11.73102 -11.65890 -11.63810 -11.15558 -11.08205 -11.03226 -10.67226 -10.52042 -10.51361 -10.18257 -9.74313 -9.55954 -9.46482 -9.08713 -8.80900 -8.34232 -7.07203 -6.61965 -4.17024 1.12720 2.17405 2.60841 3.06075 3.07932 3.10083 3.12481 3.38929 3.60706 3.65018 3.84956 4.00665 4.34353 4.36975 4.54932 4.59543 4.69721 4.74115 4.86847 4.91885 4.95724 4.96956 5.08510 5.12144 5.17255 5.25593 5.32414 5.39552 5.47739 5.52646 5.57263 5.62354 5.71679 5.72987 6.05203 6.16385 6.34930 6.43886 6.51514 6.54579 6.66048 6.83369 6.95372 7.16888 7.18875 7.27557 7.32181 7.62017 7.67881 7.83260 8.40149 8.82694 9.50057 10.54628 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.020850 B = 0.001495 C = 0.001420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.595874 B =18719.620192 C =19718.575845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.042 3.958 3 Si 0.945 3.055 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.394 4.394 8 H 0.097 0.903 9 O -0.163 6.163 10 C 0.167 3.833 11 C -0.242 4.242 12 C -0.035 4.035 13 C -0.198 4.198 14 C 0.036 3.964 15 C -0.280 4.280 16 C 0.556 3.444 17 O -0.562 6.562 18 N -0.729 5.729 19 C 0.130 3.870 20 C 0.059 3.941 21 H 0.078 0.922 22 C -0.146 4.146 23 C -0.148 4.148 24 C 0.074 3.926 25 H 0.076 0.924 26 C 0.082 3.918 27 O -0.566 6.566 28 O -0.352 6.352 29 C -0.043 4.043 30 C -0.199 4.199 31 H 0.274 0.726 32 H 0.131 0.869 33 H 0.114 0.886 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.404 0.596 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.381 0.619 46 H 0.119 0.881 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.705 -29.237 4.390 30.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.164 4.164 3 Si 0.769 3.231 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.469 4.469 8 H 0.114 0.886 9 O -0.064 6.064 10 C 0.110 3.890 11 C -0.262 4.262 12 C -0.054 4.054 13 C -0.199 4.199 14 C 0.017 3.983 15 C -0.301 4.301 16 C 0.348 3.652 17 O -0.443 6.443 18 N -0.381 5.381 19 C 0.006 3.994 20 C 0.001 3.999 21 H 0.095 0.905 22 C -0.185 4.185 23 C -0.186 4.186 24 C 0.016 3.984 25 H 0.094 0.906 26 C 0.004 3.996 27 O -0.371 6.371 28 O -0.272 6.272 29 C -0.061 4.061 30 C -0.219 4.219 31 H 0.084 0.916 32 H 0.149 0.851 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.239 0.761 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.228 0.772 46 H 0.136 0.864 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.111 -28.614 3.854 29.512 hybrid contribution -0.047 0.347 0.499 0.610 sum 6.064 -28.268 4.354 29.237 Atomic orbital electron populations 1.70006 1.06129 1.28318 1.44089 1.25386 0.95895 0.99116 0.96038 0.85718 0.78756 0.79254 0.79418 1.19273 1.20103 1.19267 1.21423 0.92072 0.80604 1.52829 0.88612 1.83903 1.34934 1.11767 1.75785 1.19614 0.90328 0.87882 0.91144 1.21098 0.93643 0.99112 1.12303 1.20985 0.98578 0.91393 0.94432 1.18470 0.92983 0.92313 1.16091 1.22274 0.99164 0.90986 0.85922 1.22437 0.99799 0.91857 1.16004 1.18409 0.87617 0.83819 0.75336 1.90766 1.14283 1.87434 1.51866 1.45746 1.10450 1.05845 1.76021 1.21329 0.93173 0.82237 1.02632 1.23326 0.92905 0.94791 0.88845 0.90462 1.22895 1.00156 0.94991 1.00418 1.22908 0.96507 0.98948 1.00188 1.22998 0.96456 0.83095 0.95866 0.90573 1.22220 0.88175 0.94551 0.94644 1.86549 1.45289 1.71992 1.33317 1.89344 1.70443 1.26261 1.41119 1.20897 0.92668 0.96930 0.95631 1.20152 0.99778 0.90127 1.11801 0.91582 0.85141 0.86822 0.85953 0.85857 0.76140 0.90911 0.90250 0.89900 0.89857 0.90229 0.89983 0.92307 0.92692 0.77200 0.86364 0.86129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.08 13.67 55.48 0.76 -23.32 16 2 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 3 Si 0.94 19.72 29.55 -169.99 -5.02 14.70 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.39 -10.59 9.48 30.91 0.29 -10.30 16 8 H 0.10 2.36 5.18 -52.49 -0.27 2.09 16 9 O -0.16 -4.48 9.74 0.74 0.01 -4.48 16 10 C 0.17 3.90 6.66 -38.88 -0.26 3.64 16 11 C -0.24 -5.11 9.14 -39.46 -0.36 -5.47 16 12 C -0.04 -0.65 9.78 -39.15 -0.38 -1.03 16 13 C -0.20 -3.49 5.87 -105.03 -0.62 -4.10 16 14 C 0.04 0.58 9.45 -37.19 -0.35 0.23 16 15 C -0.28 -4.08 9.41 -37.50 -0.35 -4.43 16 16 C 0.56 8.32 7.74 -13.04 -0.10 8.22 16 17 O -0.56 -10.21 16.23 5.17 0.08 -10.13 16 18 N -0.73 -8.48 5.51 -61.76 -0.34 -8.83 16 19 C 0.13 1.28 5.29 -4.05 -0.02 1.26 16 20 C 0.06 0.45 3.33 -25.96 -0.09 0.37 16 21 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 22 C -0.15 -0.76 6.63 -25.16 -0.17 -0.93 16 23 C -0.15 -0.68 6.63 -25.16 -0.17 -0.85 16 24 C 0.07 0.52 3.56 -25.96 -0.09 0.43 16 25 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 26 C 0.08 0.52 6.65 37.16 0.25 0.76 16 27 O -0.57 -4.65 13.66 -35.63 -0.49 -5.14 16 28 O -0.35 -3.49 11.02 -35.63 -0.39 -3.88 16 29 C -0.04 -0.76 9.40 -39.15 -0.37 -1.13 16 30 C -0.20 -4.09 9.97 -39.47 -0.39 -4.48 16 31 H 0.27 7.09 8.31 -40.82 -0.34 6.76 16 32 H 0.13 2.71 5.62 -52.48 -0.29 2.42 16 33 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.12 1.93 7.52 -52.48 -0.39 1.53 16 35 H 0.12 1.58 6.06 -52.49 -0.32 1.26 16 36 H 0.40 4.05 8.45 -40.82 -0.34 3.71 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.43 7.87 -51.93 -0.41 0.02 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 0.32 7.87 -51.93 -0.41 -0.09 16 42 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.38 1.36 9.12 45.56 0.42 1.77 16 46 H 0.12 1.73 6.16 -52.49 -0.32 1.41 16 47 H 0.12 2.36 8.06 -52.48 -0.42 1.93 16 LS Contribution 398.63 15.07 6.01 6.01 Total: -1.00 -34.27 398.63 -8.38 -42.64 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -5.71 Total: 9.23 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -3.28 Total: -16.81 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: 0.42 Total: -32.15 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.79 Total: -23.62 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.27 -8.38 -42.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294494013.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.322 kcal (2) G-P(sol) polarization free energy of solvation -34.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds