Wall clock time and date at job start Wed Apr 1 2020 04:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99829 * 2 1 4 4 H 1.48496 * 109.47178 * 239.99631 * 3 2 1 5 5 H 1.48501 * 109.47209 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46660 * 120.00012 * 3 2 1 7 7 C 1.38716 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99701 * 179.97438 * 7 2 1 9 9 O 1.34780 * 119.99985 * 0.02562 * 7 2 1 10 10 C 1.35570 * 117.00071 * 185.05788 * 9 7 2 11 11 C 1.39183 * 119.89904 * 354.44279 * 10 9 7 12 12 C 1.37596 * 120.10293 * 180.02562 * 11 10 9 13 13 C 1.40025 * 119.89676 * 0.02562 * 12 11 10 14 14 C 1.46956 * 120.09960 * 179.97438 * 13 12 11 15 15 C 1.35025 * 120.00186 * 179.97438 * 14 13 12 16 16 C 1.46255 * 120.00133 * 179.97438 * 15 14 13 17 17 O 1.21723 * 119.99891 * 0.02562 * 16 15 14 18 18 N 1.34778 * 119.99878 * 179.97438 * 16 15 14 19 19 C 1.46497 * 119.99788 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47080 * 179.97438 * 19 18 16 21 21 H 1.09003 * 110.33118 * 57.75378 * 20 19 18 22 22 C 1.54481 * 110.37476 * 180.02562 * 20 19 18 23 23 C 1.54510 * 104.06192 * 142.92182 * 22 20 19 24 24 C 1.54475 * 104.06326 * 0.02562 * 23 22 20 25 25 H 1.08999 * 110.37436 * 94.85321 * 24 23 22 26 26 C 1.52998 * 110.36996 * 217.07604 * 24 23 22 27 27 O 1.42907 * 109.47049 * 183.45135 * 26 24 23 28 28 O 1.44420 * 104.90176 * 335.96200 * 24 23 22 29 29 C 1.40027 * 119.79907 * 0.25031 * 13 12 11 30 30 C 1.37597 * 119.89413 * 359.49214 * 29 13 12 31 31 H 0.97003 * 120.00012 * 0.02562 * 1 2 3 32 32 H 1.08003 * 119.94552 * 359.97438 * 11 10 9 33 33 H 1.07995 * 120.04823 * 180.02562 * 12 11 10 34 34 H 1.08006 * 119.99891 * 359.97438 * 14 13 12 35 35 H 1.07993 * 119.99728 * 0.02562 * 15 14 13 36 36 H 0.96996 * 119.99917 * 359.97438 * 18 16 15 37 37 H 1.09001 * 109.47288 * 60.00544 * 19 18 16 38 38 H 1.08994 * 109.47707 * 300.00095 * 19 18 16 39 39 H 1.09001 * 110.51061 * 24.28249 * 22 20 19 40 40 H 1.09002 * 110.62923 * 261.62947 * 22 20 19 41 41 H 1.08997 * 110.51124 * 241.35417 * 23 22 20 42 42 H 1.09005 * 110.50898 * 118.64704 * 23 22 20 43 43 H 1.08996 * 109.47076 * 303.44718 * 26 24 23 44 44 H 1.08997 * 109.47093 * 63.45514 * 26 24 23 45 45 H 0.96695 * 113.99870 * 180.02562 * 27 26 24 46 46 H 1.08000 * 120.04703 * 179.74713 * 29 13 12 47 47 H 1.08006 * 119.94849 * 180.27211 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0087 -1.2013 -0.0005 8 1 3.0887 -1.2013 -0.0010 9 8 1.3348 -2.3685 -0.0016 10 6 2.0690 -3.5033 0.1044 11 6 3.4590 -3.4340 0.0912 12 6 4.2084 -4.5830 0.1980 13 6 3.5703 -5.8235 0.3196 14 6 4.3663 -7.0536 0.4334 15 6 3.7490 -8.2488 0.5511 16 6 4.5411 -9.4730 0.6637 17 8 5.7569 -9.4146 0.6519 18 7 3.9249 -10.6659 0.7817 19 6 4.7184 -11.8922 0.8940 20 6 3.7820 -13.0961 1.0157 21 1 3.1132 -13.1441 0.1564 22 6 4.5981 -14.4022 1.1362 23 6 3.7869 -15.2613 2.1318 24 6 2.5764 -14.3729 2.4945 25 1 1.7232 -14.6173 1.8617 26 6 2.2110 -14.5472 3.9700 27 8 1.0420 -13.7801 4.2651 28 8 3.0187 -13.0214 2.2424 29 6 2.1716 -5.8889 0.3266 30 6 1.4306 -4.7341 0.2246 31 1 -0.4850 0.8401 -0.0004 32 1 3.9502 -2.4768 -0.0039 33 1 5.2869 -4.5282 0.1880 34 1 5.4450 -7.0018 0.4229 35 1 2.6703 -8.3006 0.5612 36 1 2.9561 -10.7123 0.7923 37 1 5.3526 -11.8349 1.7787 38 1 5.3415 -12.0044 0.0069 39 1 5.5927 -14.1960 1.5318 40 1 4.6686 -14.9015 0.1698 41 1 4.3804 -15.4799 3.0195 42 1 3.4542 -16.1843 1.6569 43 1 2.0158 -15.6000 4.1740 44 1 3.0375 -14.2037 4.5920 45 1 0.7522 -13.8431 5.1855 46 1 1.6754 -6.8440 0.4161 47 1 0.3517 -4.7831 0.2344 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294494013.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:20 Heat of formation + Delta-G solvation = -148.900353 kcal Electronic energy + Delta-G solvation = -28210.445500 eV Core-core repulsion = 23937.016071 eV Total energy + Delta-G solvation = -4273.429429 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.05159 -40.81214 -40.24917 -38.50327 -37.55842 -35.79172 -34.73441 -33.99992 -33.16452 -32.03824 -31.94039 -29.85946 -28.22204 -27.43809 -25.13135 -23.99529 -23.57601 -22.53071 -22.15781 -21.81803 -20.62246 -19.74017 -18.85198 -18.43198 -18.23706 -17.53927 -17.16029 -17.01908 -16.49435 -16.43454 -15.99399 -15.96232 -15.84467 -15.61001 -15.25599 -14.85016 -14.72086 -14.63995 -14.58302 -14.11267 -13.84849 -13.71230 -13.59285 -13.29671 -13.16936 -12.69288 -12.67665 -12.62404 -12.58451 -12.35507 -12.22409 -12.13718 -12.12235 -11.54192 -11.21672 -11.10837 -11.02797 -10.96559 -10.75874 -10.58259 -10.09733 -9.89520 -8.68264 -8.51662 -6.18078 -0.25057 0.58323 1.13458 1.36026 1.47724 1.51949 2.15904 2.22782 2.36819 2.76546 2.86669 3.17775 3.21791 3.42246 3.52416 3.79075 3.86605 3.94255 3.95349 4.08591 4.10690 4.15791 4.29317 4.30661 4.35303 4.41097 4.45544 4.48841 4.55290 4.65294 4.67359 4.76401 4.93667 4.94319 4.95801 5.02792 5.10587 5.14875 5.19481 5.27138 5.33115 5.44400 5.58631 5.63506 5.81282 5.88165 5.97337 6.10216 6.56904 6.87537 6.92358 7.25616 7.69318 8.70115 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.020850 B = 0.001495 C = 0.001420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.595874 B =18719.620192 C =19718.575845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.018 4.018 3 Si 1.019 2.981 4 H -0.256 1.256 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.419 4.419 8 H 0.106 0.894 9 O -0.219 6.219 10 C 0.130 3.870 11 C -0.249 4.249 12 C -0.039 4.039 13 C -0.171 4.171 14 C 0.017 3.983 15 C -0.248 4.248 16 C 0.550 3.450 17 O -0.595 6.595 18 N -0.714 5.714 19 C 0.128 3.872 20 C 0.062 3.938 21 H 0.088 0.912 22 C -0.144 4.144 23 C -0.140 4.140 24 C 0.064 3.936 25 H 0.073 0.927 26 C 0.078 3.922 27 O -0.595 6.595 28 O -0.384 6.384 29 C -0.039 4.039 30 C -0.207 4.207 31 H 0.275 0.725 32 H 0.126 0.874 33 H 0.146 0.854 34 H 0.127 0.873 35 H 0.148 0.852 36 H 0.414 0.586 37 H 0.059 0.941 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.086 0.914 44 H 0.052 0.948 45 H 0.397 0.603 46 H 0.157 0.843 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.419 -32.874 4.555 34.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.217 4.217 3 Si 0.838 3.162 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.494 4.494 8 H 0.123 0.877 9 O -0.124 6.124 10 C 0.078 3.922 11 C -0.268 4.268 12 C -0.057 4.057 13 C -0.172 4.172 14 C -0.003 4.003 15 C -0.268 4.268 16 C 0.341 3.659 17 O -0.479 6.479 18 N -0.365 5.365 19 C 0.004 3.996 20 C 0.004 3.996 21 H 0.106 0.894 22 C -0.182 4.182 23 C -0.178 4.178 24 C 0.006 3.994 25 H 0.091 0.909 26 C 0.001 3.999 27 O -0.404 6.404 28 O -0.304 6.304 29 C -0.056 4.056 30 C -0.226 4.226 31 H 0.084 0.916 32 H 0.144 0.856 33 H 0.163 0.837 34 H 0.144 0.856 35 H 0.166 0.834 36 H 0.250 0.750 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.120 0.880 41 H 0.104 0.896 42 H 0.120 0.880 43 H 0.104 0.896 44 H 0.070 0.930 45 H 0.247 0.753 46 H 0.175 0.825 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.837 -32.351 4.036 33.531 hybrid contribution -0.422 0.831 0.521 1.067 sum 7.416 -31.521 4.557 32.700 Atomic orbital electron populations 1.70146 1.08063 1.29166 1.47636 1.26619 0.96833 1.02782 0.95447 0.84642 0.77437 0.74142 0.80000 1.18064 1.19573 1.18171 1.21875 0.92754 0.81233 1.53583 0.87682 1.83885 1.36231 1.12734 1.79584 1.20179 0.91573 0.87982 0.92481 1.21208 0.93023 1.00150 1.12387 1.21319 1.00146 0.90623 0.93633 1.18782 0.93190 0.92863 1.12360 1.22175 0.99308 0.90505 0.88289 1.22753 1.00996 0.91311 1.11755 1.18517 0.87184 0.84787 0.75387 1.90765 1.15715 1.87972 1.53424 1.45726 1.11180 1.05645 1.73952 1.21469 0.93558 0.82265 1.02278 1.23363 0.92892 0.94715 0.88654 0.89439 1.22923 0.99713 0.93902 1.01684 1.22904 0.95355 0.99059 1.00448 1.23223 0.97335 0.82444 0.96365 0.90872 1.22376 0.87516 0.95847 0.94207 1.86492 1.46069 1.72746 1.35050 1.89305 1.70915 1.28199 1.41964 1.21279 0.92738 0.97451 0.94172 1.20410 1.00352 0.90171 1.11703 0.91591 0.85612 0.83665 0.85557 0.83436 0.74969 0.92307 0.89574 0.90015 0.87957 0.89573 0.87956 0.89599 0.93019 0.75328 0.82521 0.85972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.81 13.67 21.62 0.30 -54.51 16 2 C -0.02 -1.00 5.49 84.86 0.47 -0.53 16 3 Si 1.02 41.83 29.55 68.60 2.03 43.86 16 4 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 6 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 7 C -0.42 -23.82 9.48 67.93 0.64 -23.17 16 8 H 0.11 5.45 5.18 -2.91 -0.02 5.43 16 9 O -0.22 -12.88 9.74 -20.25 -0.20 -13.07 16 10 C 0.13 6.32 6.66 22.72 0.15 6.47 16 11 C -0.25 -10.62 9.14 22.35 0.20 -10.41 16 12 C -0.04 -1.37 9.78 22.55 0.22 -1.15 16 13 C -0.17 -5.56 5.87 -20.13 -0.12 -5.68 16 14 C 0.02 0.49 9.45 23.82 0.23 0.71 16 15 C -0.25 -6.23 9.41 23.62 0.22 -6.01 16 16 C 0.55 14.81 7.74 86.33 0.67 15.48 16 17 O -0.60 -20.29 16.23 -4.42 -0.07 -20.36 16 18 N -0.71 -14.58 5.51 -467.51 -2.58 -17.16 16 19 C 0.13 2.23 5.29 86.38 0.46 2.68 16 20 C 0.06 0.78 3.33 31.10 0.10 0.88 16 21 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 22 C -0.14 -1.08 6.63 31.61 0.21 -0.87 16 23 C -0.14 -0.86 6.63 31.61 0.21 -0.65 16 24 C 0.06 0.77 3.56 31.10 0.11 0.88 16 25 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 26 C 0.08 0.83 6.65 71.98 0.48 1.31 16 27 O -0.60 -8.97 13.66 -148.60 -2.03 -11.00 16 28 O -0.38 -6.85 11.02 -148.60 -1.64 -8.49 16 29 C -0.04 -1.27 9.40 22.55 0.21 -1.06 16 30 C -0.21 -8.52 9.97 22.34 0.22 -8.30 16 31 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 32 H 0.13 5.39 5.62 -2.91 -0.02 5.38 16 33 H 0.15 4.11 8.06 -2.91 -0.02 4.08 16 34 H 0.13 3.59 7.52 -2.91 -0.02 3.57 16 35 H 0.15 2.99 6.06 -2.91 -0.02 2.98 16 36 H 0.41 6.93 8.45 -92.71 -0.78 6.15 16 37 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.08 0.64 7.87 -2.39 -0.02 0.62 16 40 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.09 0.43 7.87 -2.39 -0.02 0.41 16 42 H 0.10 0.24 8.14 -2.38 -0.02 0.22 16 43 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.40 2.36 9.12 -74.06 -0.68 1.69 16 46 H 0.16 3.89 6.16 -2.91 -0.02 3.87 16 47 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -79.39 398.63 0.06 -79.33 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: -0.44 Total: 30.84 kcal Atomic # 6 Polarization: -34.11 SS G_CDS: 4.69 Total: -29.43 kcal Atomic # 7 Polarization: -69.39 SS G_CDS: -2.28 Total: -71.67 kcal Atomic # 8 Polarization: -48.99 SS G_CDS: -3.94 Total: -52.93 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -79.39 0.06 -79.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294494013.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.567 kcal (2) G-P(sol) polarization free energy of solvation -79.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds