Wall clock time and date at job start Wed Apr 1 2020 04:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86810 * 119.99384 * 2 1 4 4 H 1.48492 * 109.47123 * 274.99024 * 3 2 1 5 5 H 1.48495 * 109.47053 * 34.99690 * 3 2 1 6 6 H 1.48504 * 109.46627 * 154.99076 * 3 2 1 7 7 C 1.39936 * 120.00623 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00078 * 153.40683 * 7 2 1 9 9 C 1.41397 * 119.99904 * 333.40850 * 7 2 1 10 10 C 1.40719 * 120.24647 * 159.43734 * 9 7 2 11 11 C 1.37612 * 119.74608 * 180.29916 * 10 9 7 12 12 C 1.38640 * 120.24609 * 359.42009 * 11 10 9 13 13 C 1.50704 * 119.74793 * 180.30456 * 12 11 10 14 14 N 1.46903 * 109.46751 * 273.23217 * 13 12 11 15 15 C 1.46898 * 110.99922 * 288.08913 * 14 13 12 16 16 C 1.53006 * 109.47271 * 292.35914 * 15 14 13 17 17 O 1.42902 * 109.46781 * 69.08520 * 16 15 14 18 18 C 1.46905 * 110.99841 * 164.13834 * 14 13 12 19 19 C 1.52992 * 109.47246 * 189.09354 * 18 14 13 20 20 O 1.42913 * 109.46865 * 66.83912 * 19 18 14 21 21 C 1.42891 * 113.99698 * 179.97438 * 20 19 18 22 22 C 1.53004 * 109.46898 * 180.02562 * 21 20 19 23 23 F 1.39901 * 109.47140 * 59.99547 * 22 21 20 24 24 F 1.39897 * 109.47370 * 180.02562 * 22 21 20 25 25 F 1.39906 * 109.46580 * 299.99967 * 22 21 20 26 26 C 1.38632 * 120.50196 * 0.60430 * 12 11 10 27 27 C 1.37614 * 120.24563 * 359.67895 * 26 12 11 28 28 H 0.96996 * 120.00675 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.12273 * 0.02562 * 10 9 7 30 30 H 1.08004 * 119.87387 * 179.72169 * 11 10 9 31 31 H 1.08997 * 109.47283 * 33.22959 * 13 12 11 32 32 H 1.08994 * 109.47184 * 153.23404 * 13 12 11 33 33 H 1.09004 * 109.46946 * 52.35655 * 15 14 13 34 34 H 1.08996 * 109.47282 * 172.36072 * 15 14 13 35 35 H 1.08999 * 109.47143 * 189.08467 * 16 15 14 36 36 H 1.08997 * 109.47245 * 309.08599 * 16 15 14 37 37 H 0.96698 * 113.99694 * 184.93038 * 17 16 15 38 38 H 1.08998 * 109.46859 * 309.10100 * 18 14 13 39 39 H 1.09005 * 109.47080 * 69.09765 * 18 14 13 40 40 H 1.08999 * 109.47439 * 186.83276 * 19 18 14 41 41 H 1.08994 * 109.47806 * 306.83690 * 19 18 14 42 42 H 1.09004 * 109.47345 * 299.99400 * 21 20 19 43 43 H 1.08998 * 109.47608 * 60.00380 * 21 20 19 44 44 H 1.07999 * 119.87508 * 179.69318 * 26 12 11 45 45 H 1.08008 * 120.12492 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6179 0.0000 4 1 2.3841 2.1075 -1.3947 5 1 1.4962 2.6199 0.8030 6 1 3.5884 1.4122 0.5919 7 6 2.0080 -1.2118 -0.0005 8 1 3.0024 -1.2610 -0.4193 9 6 1.4133 -2.3719 0.5471 10 6 1.8833 -3.6478 0.1848 11 6 1.2929 -4.7701 0.7193 12 6 0.2468 -4.6467 1.6207 13 6 -0.3870 -5.8831 2.2044 14 7 -1.4483 -6.3593 1.3073 15 6 -2.6138 -5.4662 1.3500 16 6 -3.2781 -5.5599 2.7252 17 8 -2.4221 -4.9746 3.7084 18 6 -1.8312 -7.7402 1.6310 19 6 -2.7662 -8.2780 0.5461 20 8 -2.0477 -8.4027 -0.6830 21 6 -2.8336 -8.9004 -1.7676 22 6 -1.9668 -8.9928 -3.0251 23 9 -0.8945 -9.8599 -2.7896 24 9 -2.7363 -9.4795 -4.0872 25 9 -1.4771 -7.7227 -3.3482 26 6 -0.2246 -3.3948 1.9845 27 6 0.3469 -2.2590 1.4581 28 1 -0.4851 0.8400 0.0004 29 1 2.7014 -3.7460 -0.5136 30 1 1.6490 -5.7505 0.4391 31 1 0.3689 -6.6602 2.3174 32 1 -0.8139 -5.6470 3.1790 33 1 -2.2921 -4.4402 1.1711 34 1 -3.3272 -5.7626 0.5810 35 1 -4.2284 -5.0263 2.7068 36 1 -3.4539 -6.6066 2.9732 37 1 -2.7451 -5.0655 4.6153 38 1 -0.9377 -8.3624 1.6820 39 1 -2.3425 -7.7593 2.5935 40 1 -3.1463 -9.2547 0.8454 41 1 -3.6002 -7.5894 0.4111 42 1 -3.2147 -9.8902 -1.5161 43 1 -3.6692 -8.2250 -1.9508 44 1 -1.0433 -3.3106 2.6838 45 1 -0.0222 -1.2847 1.7426 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343521973.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:42 Heat of formation + Delta-G solvation = -215.079658 kcal Electronic energy + Delta-G solvation = -31202.340629 eV Core-core repulsion = 26384.184709 eV Total energy + Delta-G solvation = -4818.155920 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.150 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.14679 -47.73321 -47.55916 -39.19927 -37.96570 -37.00867 -35.44406 -33.62730 -31.24327 -30.23409 -29.23581 -28.85677 -28.09142 -25.64059 -23.62117 -23.38610 -22.95819 -20.82853 -20.16470 -19.38195 -18.70061 -18.66496 -17.83905 -17.52502 -17.15041 -16.79229 -16.36326 -15.79887 -15.20432 -14.93610 -14.74320 -14.54108 -14.36378 -14.05901 -13.92267 -13.77068 -13.74644 -13.73842 -13.41293 -13.23633 -12.93895 -12.81471 -12.45743 -12.13418 -12.07007 -11.74277 -11.71918 -11.48971 -11.32427 -11.16960 -10.89699 -10.83212 -10.75360 -10.41618 -10.23370 -10.00357 -9.71318 -9.37854 -9.20630 -8.88343 -7.67982 -7.22778 -7.15449 -6.71624 -4.17312 2.35740 2.86702 3.12441 3.16850 3.22988 3.28061 3.31781 3.70365 3.86960 4.00674 4.20109 4.33249 4.39472 4.71379 4.76837 4.82856 4.93664 5.01232 5.07139 5.15306 5.26572 5.42421 5.59752 5.72268 5.81229 5.92844 6.12488 6.39220 6.44529 6.59424 6.67084 6.70746 6.71411 7.15379 7.19009 7.41376 7.55636 7.56923 7.60383 7.68891 7.81183 8.10616 8.21298 8.39708 8.47247 8.80010 9.04111 9.16267 10.23472 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.010344 B = 0.002964 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.227544 B = 9444.994600 C =11150.572914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.084 3.916 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.469 4.469 8 H 0.076 0.924 9 C 0.114 3.886 10 C -0.234 4.234 11 C -0.068 4.068 12 C -0.203 4.203 13 C 0.101 3.899 14 N -0.516 5.516 15 C 0.048 3.952 16 C 0.036 3.964 17 O -0.548 6.548 18 C 0.047 3.953 19 C 0.069 3.931 20 O -0.350 6.350 21 C 0.017 3.983 22 C 0.461 3.539 23 F -0.177 7.177 24 F -0.182 7.182 25 F -0.168 7.168 26 C -0.085 4.085 27 C -0.182 4.182 28 H 0.279 0.721 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.043 0.957 36 H 0.042 0.958 37 H 0.364 0.636 38 H 0.082 0.918 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.724 -16.363 2.537 20.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.135 4.135 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.498 4.498 8 H 0.094 0.906 9 C 0.111 3.889 10 C -0.254 4.254 11 C -0.087 4.087 12 C -0.204 4.204 13 C -0.024 4.024 14 N -0.239 5.239 15 C -0.080 4.080 16 C -0.044 4.044 17 O -0.353 6.353 18 C -0.081 4.081 19 C -0.008 4.008 20 O -0.268 6.268 21 C -0.062 4.062 22 C 0.406 3.594 23 F -0.159 7.159 24 F -0.164 7.164 25 F -0.150 7.150 26 C -0.104 4.104 27 C -0.201 4.201 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.210 0.790 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.107 0.893 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.166 -16.027 1.458 19.587 hybrid contribution -0.621 0.534 0.867 1.193 sum -11.787 -15.493 2.326 19.605 Atomic orbital electron populations 1.69905 1.07794 1.29156 1.33817 1.25876 0.94444 1.01189 0.92025 0.86493 0.81227 0.81171 0.78982 1.19663 1.20091 1.18364 1.19547 1.02089 0.92797 1.35345 0.90576 1.17566 0.90498 0.91727 0.89100 1.20889 1.05345 0.92745 1.06419 1.20359 0.96005 0.96178 0.96126 1.18820 1.02211 0.92593 1.06820 1.21208 0.91506 0.95061 0.94590 1.62298 1.08465 0.99456 1.53695 1.22381 0.92433 1.00790 0.92394 1.23070 0.93740 0.96122 0.91450 1.86784 1.48789 1.81418 1.18307 1.22208 0.99375 0.92321 0.94216 1.22733 0.95096 0.99083 0.83848 1.88116 1.35340 1.85724 1.17659 1.23448 0.93628 1.02608 0.86505 1.20187 0.79558 0.74377 0.85247 1.93208 1.58094 1.70187 1.94393 1.93188 1.75416 1.88280 1.59511 1.93278 1.88635 1.39494 1.93573 1.20653 0.98259 0.92455 0.98987 1.21162 1.01119 0.96922 1.00885 0.91034 0.89499 0.89859 0.93114 0.90982 0.88213 0.90485 0.93914 0.94013 0.78973 0.89976 0.93115 0.92899 0.92645 0.89273 0.88948 0.88754 0.87421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.79 11.27 55.55 0.63 -20.17 16 2 C 0.08 2.17 4.96 -17.35 -0.09 2.09 16 3 Si 0.90 19.15 29.63 -169.99 -5.04 14.11 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.47 -13.00 9.01 -37.74 -0.34 -13.34 16 8 H 0.08 2.05 7.97 -52.48 -0.42 1.63 16 9 C 0.11 3.17 5.60 -106.82 -0.60 2.57 16 10 C -0.23 -6.14 9.80 -38.87 -0.38 -6.52 16 11 C -0.07 -1.63 9.68 -39.66 -0.38 -2.02 16 12 C -0.20 -4.56 5.01 -104.33 -0.52 -5.08 16 13 C 0.10 1.83 4.88 -4.97 -0.02 1.80 16 14 N -0.52 -8.22 4.64 -236.07 -1.09 -9.32 16 15 C 0.05 0.72 5.42 -3.82 -0.02 0.70 16 16 C 0.04 0.41 6.87 37.16 0.26 0.66 16 17 O -0.55 -7.03 9.08 -35.23 -0.32 -7.35 16 18 C 0.05 0.56 5.01 -3.83 -0.02 0.54 16 19 C 0.07 0.68 6.00 37.15 0.22 0.90 16 20 O -0.35 -4.41 10.20 -35.23 -0.36 -4.77 16 21 C 0.02 0.16 5.90 37.16 0.22 0.38 16 22 C 0.46 5.33 3.32 37.16 0.12 5.45 16 23 F -0.18 -2.28 17.26 2.25 0.04 -2.25 16 24 F -0.18 -1.93 17.32 2.25 0.04 -1.89 16 25 F -0.17 -2.49 17.26 2.25 0.04 -2.45 16 26 C -0.08 -2.02 8.14 -39.66 -0.32 -2.35 16 27 C -0.18 -4.88 8.76 -38.88 -0.34 -5.22 16 28 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 29 H 0.09 2.18 8.06 -52.48 -0.42 1.76 16 30 H 0.08 1.86 8.06 -52.48 -0.42 1.44 16 31 H 0.05 0.89 7.78 -51.93 -0.40 0.49 16 32 H 0.07 1.25 4.58 -51.93 -0.24 1.01 16 33 H 0.10 1.89 6.04 -51.93 -0.31 1.58 16 34 H 0.08 1.01 6.48 -51.93 -0.34 0.67 16 35 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.04 0.39 5.76 -51.93 -0.30 0.09 16 37 H 0.36 2.96 9.12 45.57 0.42 3.38 16 38 H 0.08 1.02 7.88 -51.93 -0.41 0.61 16 39 H 0.05 0.51 5.77 -51.93 -0.30 0.21 16 40 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.50 6.30 -51.93 -0.33 0.17 16 42 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 2.10 6.55 -52.49 -0.34 1.76 16 45 H 0.11 2.98 6.21 -52.48 -0.33 2.66 16 LS Contribution 373.76 15.07 5.63 5.63 Total: -1.00 -31.80 373.76 -7.62 -39.43 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -4.97 Total: 8.45 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -2.22 Total: -19.43 kcal Atomic # 7 Polarization: -29.02 SS G_CDS: -0.47 Total: -29.49 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -0.68 Total: -12.12 kcal Atomic # 9 Polarization: -6.70 SS G_CDS: 0.12 Total: -6.58 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.04 Total: 14.11 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.80 -7.62 -39.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343521973.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.653 kcal (2) G-P(sol) polarization free energy of solvation -31.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds