Wall clock time and date at job start Wed Apr 1 2020 04:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86810 * 119.99384 * 2 1 4 4 H 1.48492 * 109.47123 * 274.99024 * 3 2 1 5 5 H 1.48495 * 109.47053 * 34.99690 * 3 2 1 6 6 H 1.48504 * 109.46627 * 154.99076 * 3 2 1 7 7 C 1.39936 * 120.00623 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00078 * 153.40683 * 7 2 1 9 9 C 1.41397 * 119.99904 * 333.40850 * 7 2 1 10 10 C 1.40719 * 120.24647 * 159.43734 * 9 7 2 11 11 C 1.37612 * 119.74608 * 180.29916 * 10 9 7 12 12 C 1.38640 * 120.24609 * 359.42009 * 11 10 9 13 13 C 1.50704 * 119.74793 * 180.30456 * 12 11 10 14 14 N 1.46903 * 109.46751 * 273.23217 * 13 12 11 15 15 C 1.46898 * 110.99922 * 288.08913 * 14 13 12 16 16 C 1.53006 * 109.47271 * 292.35914 * 15 14 13 17 17 O 1.42902 * 109.46781 * 69.08520 * 16 15 14 18 18 C 1.46905 * 110.99841 * 164.13834 * 14 13 12 19 19 C 1.52992 * 109.47246 * 189.09354 * 18 14 13 20 20 O 1.42913 * 109.46865 * 66.83912 * 19 18 14 21 21 C 1.42891 * 113.99698 * 179.97438 * 20 19 18 22 22 C 1.53004 * 109.46898 * 180.02562 * 21 20 19 23 23 F 1.39901 * 109.47140 * 59.99547 * 22 21 20 24 24 F 1.39897 * 109.47370 * 180.02562 * 22 21 20 25 25 F 1.39906 * 109.46580 * 299.99967 * 22 21 20 26 26 C 1.38632 * 120.50196 * 0.60430 * 12 11 10 27 27 C 1.37614 * 120.24563 * 359.67895 * 26 12 11 28 28 H 0.96996 * 120.00675 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.12273 * 0.02562 * 10 9 7 30 30 H 1.08004 * 119.87387 * 179.72169 * 11 10 9 31 31 H 1.08997 * 109.47283 * 33.22959 * 13 12 11 32 32 H 1.08994 * 109.47184 * 153.23404 * 13 12 11 33 33 H 1.09004 * 109.46946 * 52.35655 * 15 14 13 34 34 H 1.08996 * 109.47282 * 172.36072 * 15 14 13 35 35 H 1.08999 * 109.47143 * 189.08467 * 16 15 14 36 36 H 1.08997 * 109.47245 * 309.08599 * 16 15 14 37 37 H 0.96698 * 113.99694 * 184.93038 * 17 16 15 38 38 H 1.08998 * 109.46859 * 309.10100 * 18 14 13 39 39 H 1.09005 * 109.47080 * 69.09765 * 18 14 13 40 40 H 1.08999 * 109.47439 * 186.83276 * 19 18 14 41 41 H 1.08994 * 109.47806 * 306.83690 * 19 18 14 42 42 H 1.09004 * 109.47345 * 299.99400 * 21 20 19 43 43 H 1.08998 * 109.47608 * 60.00380 * 21 20 19 44 44 H 1.07999 * 119.87508 * 179.69318 * 26 12 11 45 45 H 1.08008 * 120.12492 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6179 0.0000 4 1 2.3841 2.1075 -1.3947 5 1 1.4962 2.6199 0.8030 6 1 3.5884 1.4122 0.5919 7 6 2.0080 -1.2118 -0.0005 8 1 3.0024 -1.2610 -0.4193 9 6 1.4133 -2.3719 0.5471 10 6 1.8833 -3.6478 0.1848 11 6 1.2929 -4.7701 0.7193 12 6 0.2468 -4.6467 1.6207 13 6 -0.3870 -5.8831 2.2044 14 7 -1.4483 -6.3593 1.3073 15 6 -2.6138 -5.4662 1.3500 16 6 -3.2781 -5.5599 2.7252 17 8 -2.4221 -4.9746 3.7084 18 6 -1.8312 -7.7402 1.6310 19 6 -2.7662 -8.2780 0.5461 20 8 -2.0477 -8.4027 -0.6830 21 6 -2.8336 -8.9004 -1.7676 22 6 -1.9668 -8.9928 -3.0251 23 9 -0.8945 -9.8599 -2.7896 24 9 -2.7363 -9.4795 -4.0872 25 9 -1.4771 -7.7227 -3.3482 26 6 -0.2246 -3.3948 1.9845 27 6 0.3469 -2.2590 1.4581 28 1 -0.4851 0.8400 0.0004 29 1 2.7014 -3.7460 -0.5136 30 1 1.6490 -5.7505 0.4391 31 1 0.3689 -6.6602 2.3174 32 1 -0.8139 -5.6470 3.1790 33 1 -2.2921 -4.4402 1.1711 34 1 -3.3272 -5.7626 0.5810 35 1 -4.2284 -5.0263 2.7068 36 1 -3.4539 -6.6066 2.9732 37 1 -2.7451 -5.0655 4.6153 38 1 -0.9377 -8.3624 1.6820 39 1 -2.3425 -7.7593 2.5935 40 1 -3.1463 -9.2547 0.8454 41 1 -3.6002 -7.5894 0.4111 42 1 -3.2147 -9.8902 -1.5161 43 1 -3.6692 -8.2250 -1.9508 44 1 -1.0433 -3.3106 2.6838 45 1 -0.0222 -1.2847 1.7426 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343521973.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:41 Heat of formation + Delta-G solvation = -237.301450 kcal Electronic energy + Delta-G solvation = -31203.304238 eV Core-core repulsion = 26384.184709 eV Total energy + Delta-G solvation = -4819.119529 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.150 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.07668 -48.63423 -48.56889 -40.33829 -39.16943 -38.45163 -36.52736 -35.50479 -32.65145 -31.42018 -31.09439 -30.01835 -29.41458 -27.23412 -24.84968 -24.27544 -24.18458 -22.74625 -21.73472 -20.76947 -19.59657 -19.59126 -19.16923 -18.70654 -18.46003 -17.67163 -17.21809 -17.10161 -16.72106 -16.24572 -15.89906 -15.62918 -15.47252 -15.35189 -15.22341 -15.01643 -14.90963 -14.75103 -14.72962 -14.52806 -14.25924 -13.91884 -13.70727 -13.66837 -13.45080 -13.14016 -13.00834 -12.81191 -12.67659 -12.56431 -12.45833 -12.33279 -12.15802 -11.96761 -11.79564 -11.23773 -11.14687 -10.85780 -10.73376 -10.62223 -9.26242 -9.17534 -8.78694 -8.64810 -6.24153 1.03457 1.24657 1.36686 1.48353 1.56665 1.57097 2.21540 2.41374 2.68160 2.91103 3.04326 3.23955 3.47195 3.52907 3.87651 4.08142 4.10797 4.18107 4.23696 4.26262 4.31716 4.38553 4.51420 4.59380 4.64818 4.66612 4.79947 4.84093 4.89417 5.00045 5.11341 5.19132 5.26609 5.30739 5.47328 5.59258 5.79559 5.99077 6.09626 6.16121 6.27473 6.44893 6.47078 6.54319 6.78039 6.99390 7.00780 7.13730 8.31548 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.010344 B = 0.002964 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.227544 B = 9444.994600 C =11150.572914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.044 3.956 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.261 1.261 7 C -0.512 4.512 8 H 0.069 0.931 9 C 0.082 3.918 10 C -0.256 4.256 11 C -0.076 4.076 12 C -0.188 4.188 13 C 0.108 3.892 14 N -0.538 5.538 15 C 0.047 3.953 16 C 0.043 3.957 17 O -0.576 6.576 18 C 0.047 3.953 19 C 0.068 3.932 20 O -0.389 6.389 21 C 0.021 3.979 22 C 0.453 3.547 23 F -0.189 7.189 24 F -0.178 7.178 25 F -0.194 7.194 26 C -0.079 4.079 27 C -0.205 4.205 28 H 0.289 0.711 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.050 0.950 34 H 0.094 0.906 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.386 0.614 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.126 0.874 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.754 -17.942 3.830 22.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.173 4.173 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.186 1.186 6 H -0.185 1.185 7 C -0.541 4.541 8 H 0.088 0.912 9 C 0.080 3.920 10 C -0.276 4.276 11 C -0.095 4.095 12 C -0.189 4.189 13 C -0.017 4.017 14 N -0.262 5.262 15 C -0.081 4.081 16 C -0.035 4.035 17 O -0.385 6.385 18 C -0.081 4.081 19 C -0.008 4.008 20 O -0.308 6.308 21 C -0.057 4.057 22 C 0.399 3.601 23 F -0.170 7.170 24 F -0.159 7.159 25 F -0.176 7.176 26 C -0.098 4.098 27 C -0.224 4.224 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.118 0.882 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.236 0.764 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.144 0.856 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.222 -17.632 2.762 22.211 hybrid contribution -0.081 0.841 0.464 0.964 sum -13.303 -16.791 3.226 21.664 Atomic orbital electron populations 1.69933 1.09250 1.30693 1.34077 1.26727 0.95234 1.04427 0.90900 0.85316 0.79443 0.76178 0.79482 1.18590 1.18631 1.18456 1.19766 1.02359 0.94400 1.37593 0.91241 1.17883 0.91510 0.92575 0.90078 1.21056 1.06017 0.93254 1.07254 1.20627 0.96351 0.96196 0.96310 1.19333 1.00730 0.94196 1.04661 1.21088 0.92477 0.92928 0.95254 1.62096 1.08716 1.01679 1.53701 1.22305 0.92561 0.97872 0.95380 1.22972 0.93288 0.98035 0.89244 1.86657 1.49931 1.81841 1.20050 1.22317 1.00018 0.89360 0.96374 1.22866 0.94338 1.01230 0.82364 1.88052 1.37279 1.86396 1.19103 1.23625 0.92689 1.05055 0.84337 1.20715 0.79634 0.73175 0.86548 1.93180 1.58948 1.70395 1.94487 1.93191 1.75038 1.88080 1.59597 1.93225 1.89125 1.41308 1.93913 1.20817 0.98082 0.92212 0.98680 1.21152 1.01972 0.97268 1.02019 0.90070 0.89710 0.88185 0.92638 0.89696 0.93114 0.88817 0.92541 0.90920 0.76426 0.90733 0.90512 0.89159 0.91622 0.85606 0.87055 0.87166 0.89063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.76 11.27 21.82 0.25 -44.51 16 2 C 0.04 2.33 4.96 85.25 0.42 2.75 16 3 Si 0.98 40.16 29.63 68.60 2.03 42.19 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 5 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.51 -29.90 9.01 23.46 0.21 -29.69 16 8 H 0.07 3.96 7.97 -2.91 -0.02 3.94 16 9 C 0.08 4.80 5.60 -21.29 -0.12 4.68 16 10 C -0.26 -14.08 9.80 22.73 0.22 -13.85 16 11 C -0.08 -3.74 9.68 22.22 0.22 -3.52 16 12 C -0.19 -8.47 5.01 -19.67 -0.10 -8.57 16 13 C 0.11 3.74 4.88 85.56 0.42 4.16 16 14 N -0.54 -16.08 4.64 -900.78 -4.18 -20.26 16 15 C 0.05 1.31 5.42 86.31 0.47 1.78 16 16 C 0.04 0.85 6.87 71.98 0.49 1.34 16 17 O -0.58 -13.22 9.08 -148.98 -1.35 -14.57 16 18 C 0.05 0.95 5.01 86.30 0.43 1.38 16 19 C 0.07 1.06 6.00 71.98 0.43 1.49 16 20 O -0.39 -8.79 10.20 -148.98 -1.52 -10.31 16 21 C 0.02 0.33 5.90 71.98 0.42 0.75 16 22 C 0.45 10.01 3.32 71.98 0.24 10.25 16 23 F -0.19 -4.73 17.26 44.97 0.78 -3.96 16 24 F -0.18 -3.53 17.32 44.97 0.78 -2.75 16 25 F -0.19 -5.78 17.26 44.97 0.78 -5.00 16 26 C -0.08 -3.87 8.14 22.22 0.18 -3.69 16 27 C -0.20 -11.50 8.76 22.73 0.20 -11.30 16 28 H 0.29 14.18 8.30 -92.71 -0.77 13.41 16 29 H 0.08 4.52 8.06 -2.91 -0.02 4.50 16 30 H 0.10 4.49 8.06 -2.91 -0.02 4.46 16 31 H 0.06 1.85 7.78 -2.39 -0.02 1.83 16 32 H 0.09 2.74 4.58 -2.39 -0.01 2.73 16 33 H 0.05 1.92 6.04 -2.38 -0.01 1.91 16 34 H 0.09 2.23 6.48 -2.39 -0.02 2.22 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 0.99 5.76 -2.39 -0.01 0.98 16 37 H 0.39 5.03 9.12 -74.05 -0.68 4.36 16 38 H 0.07 1.64 7.88 -2.39 -0.02 1.62 16 39 H 0.08 1.16 5.77 -2.38 -0.01 1.15 16 40 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 0.89 6.30 -2.39 -0.02 0.88 16 42 H 0.13 1.02 8.14 -2.38 -0.02 1.00 16 43 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.11 4.95 6.55 -2.91 -0.02 4.93 16 45 H 0.09 5.33 6.21 -2.91 -0.02 5.31 16 Total: -1.00 -73.99 373.76 2.07 -71.91 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.37 Total: 29.28 kcal Atomic # 6 Polarization: -46.17 SS G_CDS: 4.14 Total: -42.03 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: -3.93 Total: -64.77 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -2.87 Total: -24.88 kcal Atomic # 9 Polarization: -14.04 SS G_CDS: 2.33 Total: -11.71 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Total: -73.99 2.07 -71.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343521973.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.387 kcal (2) G-P(sol) polarization free energy of solvation -73.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds