Wall clock time and date at job start Wed Apr 1 2020 04:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99740 * 2 1 4 4 H 1.48502 * 109.47252 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47262 * 299.99721 * 3 2 1 6 6 H 1.48501 * 109.47152 * 59.99999 * 3 2 1 7 7 C 1.37871 * 120.00516 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00708 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99691 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46958 * 179.97438 * 9 7 2 11 11 N 1.46505 * 109.46958 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00115 * 179.97438 * 11 10 9 13 13 O 1.21288 * 119.99593 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00369 * 179.97438 * 12 11 10 15 15 C 1.53001 * 109.47291 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.46886 * 179.97438 * 15 14 12 17 17 C 1.50703 * 109.46912 * 180.02562 * 16 15 14 18 18 O 1.21300 * 120.00069 * 359.97438 * 17 16 15 19 19 C 1.46863 * 120.00056 * 180.02562 * 17 16 15 20 20 C 1.40010 * 120.12427 * 359.73061 * 19 17 16 21 21 C 1.37600 * 119.93643 * 179.75586 * 20 19 17 22 22 C 1.39098 * 120.30834 * 0.58488 * 21 20 19 23 23 C 1.39357 * 120.08531 * 359.60912 * 22 21 20 24 24 C 1.38177 * 119.98656 * 0.12082 * 23 22 21 25 25 O 1.36147 * 120.75375 * 180.27139 * 23 22 21 26 26 C 1.43173 * 116.70863 * 342.86760 * 25 23 22 27 27 C 1.53460 * 108.23649 * 46.13290 * 26 25 23 28 28 O 1.35923 * 119.21730 * 179.51792 * 22 21 20 29 29 H 0.97002 * 120.00201 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 31 31 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 32 32 H 1.08998 * 109.47844 * 59.99593 * 10 9 7 33 33 H 1.09002 * 109.46838 * 299.99323 * 10 9 7 34 34 H 0.97003 * 120.00244 * 359.97438 * 11 10 9 35 35 H 1.09001 * 109.46613 * 59.99889 * 14 12 11 36 36 H 1.09002 * 109.47120 * 300.00240 * 14 12 11 37 37 H 1.09001 * 109.46652 * 60.00253 * 15 14 12 38 38 H 1.08992 * 109.47514 * 300.00342 * 15 14 12 39 39 H 1.09002 * 109.47398 * 300.00496 * 16 15 14 40 40 H 1.09001 * 109.47194 * 60.00677 * 16 15 14 41 41 H 1.08004 * 120.03291 * 0.02562 * 20 19 17 42 42 H 1.08000 * 119.84693 * 180.29143 * 21 20 19 43 43 H 1.07999 * 120.03103 * 179.97438 * 24 23 22 44 44 H 1.08992 * 109.71402 * 165.82520 * 26 25 23 45 45 H 1.09003 * 109.70443 * 286.45102 * 26 25 23 46 46 H 1.09005 * 109.70284 * 59.85743 * 27 26 25 47 47 H 1.08995 * 109.70840 * 180.47757 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6619 0.0005 11 7 1.5130 -4.9307 0.0012 12 6 2.1869 -6.0979 0.0007 13 8 3.3997 -6.0978 -0.0006 14 6 1.4335 -7.4031 0.0020 15 6 2.4278 -8.5659 0.0005 16 6 1.6628 -9.8910 0.0024 17 6 2.6422 -11.0364 0.0017 18 8 3.8347 -10.8147 -0.0007 19 6 2.1527 -12.4210 0.0026 20 6 0.7768 -12.6799 0.0099 21 6 0.3224 -13.9788 0.0057 22 6 1.2241 -15.0379 0.0065 23 6 2.5951 -14.7881 0.0033 24 6 3.0600 -13.4869 0.0019 25 8 3.4897 -15.8144 -0.0016 26 6 2.9922 -17.1035 0.3736 27 6 1.6698 -17.3421 -0.3674 28 8 0.7509 -16.3121 0.0122 29 1 -0.4850 0.8400 0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6241 -2.5566 0.8903 32 1 2.8722 -3.6042 0.8904 33 1 2.8720 -3.6042 -0.8895 34 1 0.5429 -4.9308 0.0019 35 1 0.8059 -7.4610 -0.8873 36 1 0.8078 -7.4606 0.8926 37 1 3.0557 -8.5081 0.8896 38 1 3.0531 -8.5083 -0.8903 39 1 1.0377 -9.9484 0.8935 40 1 1.0346 -9.9491 -0.8864 41 1 0.0726 -11.8610 0.0145 42 1 -0.7393 -14.1768 0.0066 43 1 4.1224 -13.2926 -0.0002 44 1 3.7137 -17.8714 0.0947 45 1 2.8211 -17.1325 1.4497 46 1 1.8395 -17.3049 -1.4435 47 1 1.2647 -18.3159 -0.0921 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355915047.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:07 Heat of formation + Delta-G solvation = -142.338983 kcal Electronic energy + Delta-G solvation = -28064.196391 eV Core-core repulsion = 23791.051484 eV Total energy + Delta-G solvation = -4273.144907 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.84390 -40.05606 -39.15564 -37.86553 -37.68865 -34.99173 -34.23809 -32.81520 -32.07216 -31.27620 -30.21017 -29.47944 -28.09991 -25.72146 -24.89902 -23.80720 -22.58865 -21.84584 -20.87399 -19.99279 -19.88362 -19.14319 -17.83681 -17.79256 -16.72590 -16.34416 -16.23243 -16.17478 -15.95301 -15.60153 -15.22849 -15.08084 -14.96058 -14.88406 -14.43828 -14.41373 -14.13834 -13.98546 -13.78145 -13.19983 -13.07859 -12.89392 -12.41127 -12.36280 -12.02746 -11.95889 -11.70320 -11.68295 -11.46734 -11.17663 -11.08156 -11.03465 -10.81530 -10.61059 -10.31116 -10.01791 -9.75607 -9.41492 -9.23799 -9.12658 -8.66971 -8.51543 -8.32047 -6.08616 -4.11148 0.17375 0.77132 1.99088 2.41516 2.58085 3.08316 3.24255 3.29292 3.36804 3.42040 3.54913 3.58413 3.89192 3.99534 4.17239 4.26699 4.43164 4.43766 4.59959 4.64339 4.77417 4.78969 4.84300 4.87814 4.94296 5.08084 5.27681 5.28672 5.32238 5.38585 5.44074 5.56333 5.61052 5.70255 5.78628 5.97219 6.07515 6.27487 6.33005 6.38398 6.39082 6.77260 6.78765 6.97791 7.28416 7.53596 7.63330 7.90134 8.07426 8.29767 8.72954 8.95330 9.53857 11.03048 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.044557 B = 0.001260 C = 0.001228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.250702 B =22219.767180 C =22787.102667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.725 5.725 12 C 0.501 3.499 13 O -0.550 6.550 14 C -0.141 4.141 15 C -0.096 4.096 16 C -0.165 4.165 17 C 0.397 3.603 18 O -0.442 6.442 19 C -0.165 4.165 20 C -0.065 4.065 21 C -0.127 4.127 22 C 0.079 3.921 23 C 0.036 3.964 24 C -0.055 4.055 25 O -0.305 6.305 26 C 0.019 3.981 27 C 0.019 3.981 28 O -0.304 6.304 29 H 0.261 0.739 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.397 0.603 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.146 0.854 44 H 0.125 0.875 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.177 -39.061 0.008 39.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.002 4.002 11 N -0.375 5.375 12 C 0.287 3.713 13 O -0.428 6.428 14 C -0.182 4.182 15 C -0.134 4.134 16 C -0.203 4.203 17 C 0.274 3.726 18 O -0.317 6.317 19 C -0.166 4.166 20 C -0.084 4.084 21 C -0.145 4.145 22 C 0.034 3.966 23 C -0.009 4.009 24 C -0.073 4.073 25 O -0.220 6.220 26 C -0.056 4.056 27 C -0.056 4.056 28 O -0.218 6.218 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.230 0.770 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.163 0.837 42 H 0.160 0.840 43 H 0.164 0.836 44 H 0.142 0.858 45 H 0.097 0.903 46 H 0.099 0.901 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.790 -38.867 0.006 38.908 hybrid contribution -0.243 0.583 0.004 0.631 sum -2.033 -38.284 0.010 38.338 Atomic orbital electron populations 1.69962 1.06090 1.26737 1.50586 1.24989 0.94880 0.99397 0.94994 0.86468 0.80219 0.83355 0.77602 1.19561 1.20942 1.20935 1.21108 0.93311 0.90426 1.51098 0.92205 1.19329 0.94214 0.91194 0.97796 1.21703 0.96039 0.81703 1.00723 1.46360 1.10459 1.06662 1.74015 1.20610 0.88345 0.85679 0.76658 1.90693 1.14147 1.87866 1.50104 1.21679 0.99336 0.92942 1.04201 1.21138 0.97094 0.90129 1.05005 1.22079 0.99217 0.94191 1.04788 1.22347 0.89854 0.88822 0.71614 1.90587 1.18717 1.87090 1.35269 1.20326 0.93772 0.94816 1.07723 1.21246 0.94422 0.96360 0.96353 1.20420 0.99689 0.90030 1.04411 1.19273 0.91211 0.85298 1.00849 1.18755 0.87358 0.89014 1.05794 1.20677 1.01396 0.88180 0.97084 1.86371 1.34909 1.16054 1.84636 1.23668 0.97224 0.84473 1.00243 1.23708 0.90160 0.91428 1.00353 1.86285 1.38910 1.12881 1.83703 0.92925 0.95964 0.95953 0.92666 0.92658 0.76956 0.89031 0.89025 0.90501 0.90492 0.88024 0.88014 0.83670 0.83981 0.83591 0.85754 0.90260 0.90105 0.85707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.61 5.61 -4.04 -0.02 2.59 16 11 N -0.72 -12.53 5.56 -60.29 -0.33 -12.87 16 12 C 0.50 8.37 7.83 -10.99 -0.09 8.28 16 13 O -0.55 -11.63 15.98 5.55 0.09 -11.54 16 14 C -0.14 -1.52 5.70 -27.88 -0.16 -1.68 16 15 C -0.10 -1.09 3.79 -26.73 -0.10 -1.19 16 16 C -0.17 -1.23 4.30 -27.88 -0.12 -1.35 16 17 C 0.40 3.96 7.11 -30.82 -0.22 3.74 16 18 O -0.44 -6.17 15.97 5.54 0.09 -6.08 16 19 C -0.17 -1.43 5.87 -105.09 -0.62 -2.04 16 20 C -0.07 -0.41 9.46 -39.15 -0.37 -0.78 16 21 C -0.13 -0.83 9.94 -39.50 -0.39 -1.23 16 22 C 0.08 0.64 6.51 -38.85 -0.25 0.39 16 23 C 0.04 0.32 6.48 -39.19 -0.25 0.07 16 24 C -0.05 -0.53 9.50 -38.95 -0.37 -0.90 16 25 O -0.30 -2.54 10.41 -32.94 -0.34 -2.89 16 26 C 0.02 0.08 7.26 37.40 0.27 0.35 16 27 C 0.02 0.07 7.25 37.40 0.27 0.34 16 28 O -0.30 -2.15 10.40 -32.24 -0.34 -2.49 16 29 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.40 5.77 8.47 -40.82 -0.35 5.43 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 1.04 8.06 -51.93 -0.42 0.62 16 38 H 0.08 1.04 8.06 -51.93 -0.42 0.62 16 39 H 0.10 0.52 8.08 -51.93 -0.42 0.10 16 40 H 0.10 0.52 8.09 -51.93 -0.42 0.10 16 41 H 0.15 0.47 7.04 -52.48 -0.37 0.10 16 42 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 43 H 0.15 1.49 7.64 -52.49 -0.40 1.09 16 44 H 0.12 0.17 8.14 -51.93 -0.42 -0.25 16 45 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.13 0.10 8.14 -51.93 -0.42 -0.33 16 LS Contribution 399.69 15.07 6.02 6.02 Total: -1.00 -36.77 399.69 -9.06 -45.83 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.98 Total: -0.46 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -2.97 Total: -6.58 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.40 Total: -38.30 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.50 Total: -22.99 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.77 -9.06 -45.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355915047.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.509 kcal (2) G-P(sol) polarization free energy of solvation -36.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds