Wall clock time and date at job start Wed Apr 1 2020 04:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99772 * 2 1 4 4 H 1.48489 * 109.47225 * 239.99664 * 3 2 1 5 5 H 1.48503 * 109.47041 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46817 * 119.99998 * 3 2 1 7 7 C 1.38696 * 120.00023 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99688 * 180.02562 * 7 2 1 9 9 O 1.34811 * 120.00145 * 359.97438 * 7 2 1 10 10 C 1.35525 * 117.00256 * 185.06471 * 9 7 2 11 11 C 1.38837 * 120.15831 * 354.40067 * 10 9 7 12 12 C 1.38016 * 120.07135 * 179.97438 * 11 10 9 13 13 C 1.38575 * 120.40582 * 0.04119 * 12 11 10 14 14 C 1.37830 * 120.31732 * 359.70164 * 13 12 11 15 15 C 1.39666 * 119.92278 * 0.53174 * 14 13 12 16 16 C 1.47531 * 120.20159 * 179.77288 * 15 14 13 17 17 O 1.21587 * 120.00325 * 179.72255 * 16 15 14 18 18 N 1.34784 * 119.99670 * 359.71461 * 16 15 14 19 19 C 1.46497 * 119.99883 * 180.02562 * 18 16 15 20 20 H 1.09001 * 109.64964 * 325.27954 * 19 18 16 21 21 C 1.53191 * 109.55978 * 85.54829 * 19 18 16 22 22 C 1.53084 * 109.29325 * 177.42380 * 21 19 18 23 23 O 1.43056 * 109.37579 * 301.81313 * 22 21 19 24 24 C 1.41975 * 114.24255 * 59.67028 * 23 22 21 25 25 C 1.54816 * 110.38176 * 178.17238 * 24 23 22 26 26 C 1.55066 * 100.94751 * 274.90704 * 25 24 23 27 27 O 1.43711 * 105.20893 * 324.27993 * 26 25 24 28 28 C 1.43419 * 109.93274 * 24.30548 * 27 26 25 29 29 C 1.52282 * 111.40391 * 301.05791 * 24 23 22 30 30 H 0.96995 * 120.00642 * 0.02562 * 1 2 3 31 31 H 1.08003 * 119.96425 * 359.97438 * 11 10 9 32 32 H 1.08001 * 119.79971 * 180.02562 * 12 11 10 33 33 H 1.07992 * 119.84384 * 179.97438 * 13 12 11 34 34 H 1.07999 * 120.03865 * 180.30074 * 14 13 12 35 35 H 0.97000 * 120.00078 * 0.02562 * 18 16 15 36 36 H 1.08999 * 109.50728 * 297.37538 * 21 19 18 37 37 H 1.08998 * 109.49883 * 57.48542 * 21 19 18 38 38 H 1.09008 * 109.48208 * 61.78252 * 22 21 19 39 39 H 1.08996 * 109.48821 * 181.83930 * 22 21 19 40 40 H 1.08998 * 111.04727 * 157.00684 * 25 24 23 41 41 H 1.08999 * 111.20502 * 32.87314 * 25 24 23 42 42 H 1.08995 * 110.30026 * 205.34937 * 26 25 24 43 43 H 1.08997 * 110.29859 * 83.21100 * 26 25 24 44 44 H 1.09006 * 109.85299 * 117.28761 * 28 27 26 45 45 H 1.08992 * 109.85709 * 238.23605 * 28 27 26 46 46 H 1.08998 * 109.51261 * 175.54458 * 29 24 23 47 47 H 1.08998 * 109.51324 * 295.69249 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0087 -1.2011 -0.0005 8 1 3.0887 -1.2011 -0.0001 9 8 1.3347 -2.3687 -0.0005 10 6 2.0687 -3.5029 0.1055 11 6 3.4556 -3.4402 0.0911 12 6 4.2014 -4.5964 0.1997 13 6 3.5748 -5.8262 0.3230 14 6 2.1990 -5.9070 0.3445 15 6 1.4310 -4.7460 0.2305 16 6 -0.0420 -4.8259 0.2477 17 8 -0.7070 -3.8124 0.1534 18 7 -0.6506 -6.0225 0.3680 19 6 -2.1133 -6.1020 0.3845 20 1 -2.5222 -5.2267 0.8892 21 6 -2.6402 -6.1580 -1.0528 22 6 -4.1637 -6.3056 -1.0277 23 8 -4.5139 -7.4893 -0.3047 24 6 -4.0649 -7.5041 1.0421 25 6 -4.5300 -8.7993 1.7514 26 6 -5.9534 -8.3891 2.2098 27 8 -5.8510 -6.9988 2.5591 28 6 -4.7510 -6.3991 1.8612 29 6 -2.5501 -7.3718 1.1244 30 1 -0.4851 0.8400 -0.0004 31 1 3.9514 -2.4855 -0.0053 32 1 5.2800 -4.5424 0.1884 33 1 4.1672 -6.7252 0.4070 34 1 1.7154 -6.8674 0.4455 35 1 -0.1201 -6.8311 0.4435 36 1 -2.3722 -5.2394 -1.5748 37 1 -2.2004 -7.0116 -1.5685 38 1 -4.6051 -5.4370 -0.5389 39 1 -4.5388 -6.3786 -2.0484 40 1 -3.8928 -9.0283 2.6055 41 1 -4.5675 -9.6378 1.0561 42 1 -6.2549 -8.9756 3.0776 43 1 -6.6660 -8.5229 1.3960 44 1 -5.1170 -5.6176 1.1952 45 1 -4.0455 -5.9758 2.5760 46 1 -2.2465 -7.3070 2.1693 47 1 -2.0830 -8.2414 0.6621 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362315129.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:39 Heat of formation + Delta-G solvation = -119.084613 kcal Electronic energy + Delta-G solvation = -31098.008553 eV Core-core repulsion = 26825.872031 eV Total energy + Delta-G solvation = -4272.136522 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.98432 -39.59923 -38.35967 -37.49797 -36.37037 -34.90508 -32.71149 -32.37301 -31.82950 -30.06773 -29.84509 -28.95217 -27.20825 -25.42666 -24.23479 -23.45174 -22.88276 -21.82955 -21.17846 -19.95349 -19.56675 -18.07374 -17.70620 -17.25380 -16.73074 -16.24197 -15.72757 -15.48343 -15.27969 -15.00830 -14.68128 -14.50319 -14.32106 -14.15247 -13.99936 -13.81042 -13.70952 -13.37875 -13.17968 -13.01848 -12.70481 -12.52343 -12.16519 -11.96784 -11.74117 -11.67439 -11.48971 -11.36997 -11.32646 -11.15369 -11.00990 -10.90486 -10.83275 -10.50455 -10.37871 -9.79093 -9.71099 -9.58865 -8.90378 -8.87007 -8.64271 -8.31093 -7.34507 -6.47181 -4.07203 1.67670 2.28587 3.09936 3.11952 3.14493 3.37320 3.50329 3.68172 3.69023 3.91290 4.11870 4.48807 4.55995 4.60051 4.74018 4.78260 4.92880 5.01447 5.03411 5.06925 5.14240 5.20866 5.28983 5.34697 5.43054 5.45528 5.49061 5.51795 5.60645 5.63510 5.69207 5.71354 5.75949 5.86384 5.97895 6.08445 6.11424 6.23682 6.52790 6.65287 6.74507 6.86876 6.89905 7.02646 7.02974 7.20557 7.26043 7.65979 7.88875 8.06423 8.92272 9.04078 9.64114 10.66434 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012768 B = 0.002880 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.447107 B = 9718.618224 C =11209.679229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.046 3.954 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.405 4.405 8 H 0.093 0.907 9 O -0.123 6.123 10 C 0.189 3.811 11 C -0.238 4.238 12 C -0.050 4.050 13 C -0.231 4.231 14 C -0.038 4.038 15 C -0.228 4.228 16 C 0.555 3.445 17 O -0.500 6.500 18 N -0.739 5.739 19 C 0.149 3.851 20 H 0.090 0.910 21 C -0.167 4.167 22 C 0.060 3.940 23 O -0.364 6.364 24 C 0.092 3.908 25 C -0.142 4.142 26 C 0.052 3.948 27 O -0.381 6.381 28 C 0.025 3.975 29 C -0.143 4.143 30 H 0.272 0.728 31 H 0.132 0.868 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.392 0.608 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.064 0.936 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.662 -17.190 1.639 17.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.162 4.162 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.480 4.480 8 H 0.111 0.889 9 O -0.021 6.021 10 C 0.129 3.871 11 C -0.257 4.257 12 C -0.069 4.069 13 C -0.250 4.250 14 C -0.057 4.057 15 C -0.233 4.233 16 C 0.345 3.655 17 O -0.373 6.373 18 N -0.394 5.394 19 C 0.044 3.956 20 H 0.108 0.892 21 C -0.206 4.206 22 C -0.017 4.017 23 O -0.283 6.283 24 C 0.051 3.949 25 C -0.179 4.179 26 C -0.024 4.024 27 O -0.300 6.300 28 C -0.052 4.052 29 C -0.182 4.182 30 H 0.082 0.918 31 H 0.149 0.851 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.227 0.773 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.119 0.881 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.103 0.897 43 H 0.083 0.917 44 H 0.096 0.904 45 H 0.101 0.899 46 H 0.103 0.897 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.874 -16.176 1.606 17.284 hybrid contribution 1.286 0.486 -0.130 1.380 sum -4.589 -15.690 1.477 16.414 Atomic orbital electron populations 1.70109 1.05964 1.27877 1.42388 1.25377 0.95804 0.98940 0.96126 0.85800 0.78809 0.79670 0.79270 1.19363 1.20128 1.19357 1.21450 0.91872 0.81124 1.53581 0.88930 1.84167 1.33528 1.10968 1.73433 1.19276 0.89857 0.87402 0.90545 1.21162 0.93402 0.99348 1.11795 1.20900 0.98658 0.92313 0.95032 1.20461 0.94065 0.97123 1.13382 1.20750 0.93856 0.95483 0.95592 1.18825 0.91867 0.92175 1.20468 1.18261 0.87847 0.82786 0.76587 1.90945 1.65748 1.33835 1.46820 1.45929 1.05694 1.09303 1.78471 1.20805 0.81614 0.97936 0.95294 0.89229 1.22628 0.95900 1.03946 0.98157 1.22703 0.94445 0.87632 0.96925 1.87802 1.77599 1.40913 1.22022 1.22299 0.93223 0.95531 0.83801 1.23246 0.97234 0.96995 1.00417 1.23402 0.96286 0.82476 1.00254 1.88462 1.50808 1.22853 1.67865 1.23810 0.89329 0.96142 0.95926 1.22284 0.94710 0.98902 1.02269 0.91786 0.85073 0.87178 0.87285 0.87117 0.77342 0.89560 0.90932 0.92356 0.88150 0.88874 0.88719 0.89658 0.91746 0.90422 0.89931 0.89732 0.90065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.82 13.67 55.48 0.76 -24.06 16 2 C 0.05 1.26 5.49 -17.52 -0.10 1.16 16 3 Si 0.94 20.35 29.55 -169.99 -5.02 15.33 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.40 -11.33 9.49 30.90 0.29 -11.04 16 8 H 0.09 2.35 5.21 -52.49 -0.27 2.07 16 9 O -0.12 -3.58 7.84 -21.06 -0.17 -3.75 16 10 C 0.19 4.62 6.66 -38.60 -0.26 4.36 16 11 C -0.24 -5.04 9.16 -39.44 -0.36 -5.40 16 12 C -0.05 -0.87 10.03 -39.54 -0.40 -1.27 16 13 C -0.23 -3.70 10.03 -39.61 -0.40 -4.10 16 14 C -0.04 -0.63 9.53 -39.20 -0.37 -1.00 16 15 C -0.23 -4.84 5.89 -104.81 -0.62 -5.46 16 16 C 0.56 11.76 7.74 -12.47 -0.10 11.67 16 17 O -0.50 -13.20 14.83 -16.57 -0.25 -13.45 16 18 N -0.74 -11.31 5.03 -54.59 -0.27 -11.58 16 19 C 0.15 2.05 2.36 -67.67 -0.16 1.89 16 20 H 0.09 1.46 7.09 -51.93 -0.37 1.09 16 21 C -0.17 -2.20 5.70 -26.59 -0.15 -2.35 16 22 C 0.06 0.69 6.61 37.20 0.25 0.93 16 23 O -0.36 -4.25 10.28 -35.23 -0.36 -4.62 16 24 C 0.09 0.97 0.81 -89.66 -0.07 0.90 16 25 C -0.14 -1.18 6.31 -24.68 -0.16 -1.33 16 26 C 0.05 0.48 7.79 38.25 0.30 0.78 16 27 O -0.38 -4.79 11.37 -35.23 -0.40 -5.19 16 28 C 0.02 0.29 6.26 37.52 0.23 0.53 16 29 C -0.14 -1.48 4.22 -26.93 -0.11 -1.59 16 30 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.13 2.74 5.64 -52.48 -0.30 2.45 16 32 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 34 H 0.11 1.40 6.40 -52.49 -0.34 1.06 16 35 H 0.39 4.77 6.64 -40.82 -0.27 4.50 16 36 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.69 6.36 -51.92 -0.33 0.36 16 39 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.09 0.65 8.00 -51.93 -0.42 0.23 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.08 0.97 6.14 -51.93 -0.32 0.65 16 45 H 0.08 0.98 7.68 -51.93 -0.40 0.58 16 46 H 0.08 0.81 8.01 -51.93 -0.42 0.40 16 47 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 376.55 15.07 5.67 5.67 Total: -1.00 -34.73 376.55 -8.58 -43.31 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -6.36 Total: 9.66 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -2.18 Total: -11.32 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.48 Total: -35.64 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -1.17 Total: -27.00 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.73 -8.58 -43.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362315129.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.774 kcal (2) G-P(sol) polarization free energy of solvation -34.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds