Wall clock time and date at job start Wed Apr 1 2020 04:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99772 * 2 1 4 4 H 1.48489 * 109.47225 * 239.99664 * 3 2 1 5 5 H 1.48503 * 109.47041 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46817 * 119.99998 * 3 2 1 7 7 C 1.38696 * 120.00023 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99688 * 180.02562 * 7 2 1 9 9 O 1.34811 * 120.00145 * 359.97438 * 7 2 1 10 10 C 1.35525 * 117.00256 * 185.06471 * 9 7 2 11 11 C 1.38837 * 120.15831 * 354.40067 * 10 9 7 12 12 C 1.38016 * 120.07135 * 179.97438 * 11 10 9 13 13 C 1.38575 * 120.40582 * 0.04119 * 12 11 10 14 14 C 1.37830 * 120.31732 * 359.70164 * 13 12 11 15 15 C 1.39666 * 119.92278 * 0.53174 * 14 13 12 16 16 C 1.47531 * 120.20159 * 179.77288 * 15 14 13 17 17 O 1.21587 * 120.00325 * 179.72255 * 16 15 14 18 18 N 1.34784 * 119.99670 * 359.71461 * 16 15 14 19 19 C 1.46497 * 119.99883 * 180.02562 * 18 16 15 20 20 H 1.09001 * 109.64964 * 325.27954 * 19 18 16 21 21 C 1.53191 * 109.55978 * 85.54829 * 19 18 16 22 22 C 1.53084 * 109.29325 * 177.42380 * 21 19 18 23 23 O 1.43056 * 109.37579 * 301.81313 * 22 21 19 24 24 C 1.41975 * 114.24255 * 59.67028 * 23 22 21 25 25 C 1.54816 * 110.38176 * 178.17238 * 24 23 22 26 26 C 1.55066 * 100.94751 * 274.90704 * 25 24 23 27 27 O 1.43711 * 105.20893 * 324.27993 * 26 25 24 28 28 C 1.43419 * 109.93274 * 24.30548 * 27 26 25 29 29 C 1.52282 * 111.40391 * 301.05791 * 24 23 22 30 30 H 0.96995 * 120.00642 * 0.02562 * 1 2 3 31 31 H 1.08003 * 119.96425 * 359.97438 * 11 10 9 32 32 H 1.08001 * 119.79971 * 180.02562 * 12 11 10 33 33 H 1.07992 * 119.84384 * 179.97438 * 13 12 11 34 34 H 1.07999 * 120.03865 * 180.30074 * 14 13 12 35 35 H 0.97000 * 120.00078 * 0.02562 * 18 16 15 36 36 H 1.08999 * 109.50728 * 297.37538 * 21 19 18 37 37 H 1.08998 * 109.49883 * 57.48542 * 21 19 18 38 38 H 1.09008 * 109.48208 * 61.78252 * 22 21 19 39 39 H 1.08996 * 109.48821 * 181.83930 * 22 21 19 40 40 H 1.08998 * 111.04727 * 157.00684 * 25 24 23 41 41 H 1.08999 * 111.20502 * 32.87314 * 25 24 23 42 42 H 1.08995 * 110.30026 * 205.34937 * 26 25 24 43 43 H 1.08997 * 110.29859 * 83.21100 * 26 25 24 44 44 H 1.09006 * 109.85299 * 117.28761 * 28 27 26 45 45 H 1.08992 * 109.85709 * 238.23605 * 28 27 26 46 46 H 1.08998 * 109.51261 * 175.54458 * 29 24 23 47 47 H 1.08998 * 109.51324 * 295.69249 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0087 -1.2011 -0.0005 8 1 3.0887 -1.2011 -0.0001 9 8 1.3347 -2.3687 -0.0005 10 6 2.0687 -3.5029 0.1055 11 6 3.4556 -3.4402 0.0911 12 6 4.2014 -4.5964 0.1997 13 6 3.5748 -5.8262 0.3230 14 6 2.1990 -5.9070 0.3445 15 6 1.4310 -4.7460 0.2305 16 6 -0.0420 -4.8259 0.2477 17 8 -0.7070 -3.8124 0.1534 18 7 -0.6506 -6.0225 0.3680 19 6 -2.1133 -6.1020 0.3845 20 1 -2.5222 -5.2267 0.8892 21 6 -2.6402 -6.1580 -1.0528 22 6 -4.1637 -6.3056 -1.0277 23 8 -4.5139 -7.4893 -0.3047 24 6 -4.0649 -7.5041 1.0421 25 6 -4.5300 -8.7993 1.7514 26 6 -5.9534 -8.3891 2.2098 27 8 -5.8510 -6.9988 2.5591 28 6 -4.7510 -6.3991 1.8612 29 6 -2.5501 -7.3718 1.1244 30 1 -0.4851 0.8400 -0.0004 31 1 3.9514 -2.4855 -0.0053 32 1 5.2800 -4.5424 0.1884 33 1 4.1672 -6.7252 0.4070 34 1 1.7154 -6.8674 0.4455 35 1 -0.1201 -6.8311 0.4435 36 1 -2.3722 -5.2394 -1.5748 37 1 -2.2004 -7.0116 -1.5685 38 1 -4.6051 -5.4370 -0.5389 39 1 -4.5388 -6.3786 -2.0484 40 1 -3.8928 -9.0283 2.6055 41 1 -4.5675 -9.6378 1.0561 42 1 -6.2549 -8.9756 3.0776 43 1 -6.6660 -8.5229 1.3960 44 1 -5.1170 -5.6176 1.1952 45 1 -4.0455 -5.9758 2.5760 46 1 -2.2465 -7.3070 2.1693 47 1 -2.0830 -8.2414 0.6621 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362315129.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:38 Heat of formation + Delta-G solvation = -144.671158 kcal Electronic energy + Delta-G solvation = -31099.118069 eV Core-core repulsion = 26825.872031 eV Total energy + Delta-G solvation = -4273.246038 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.96831 -41.17487 -39.86928 -38.61007 -38.01995 -36.24947 -34.33606 -33.62229 -33.19650 -31.47068 -30.65317 -30.56660 -28.23024 -27.36312 -25.40705 -24.59777 -23.98442 -23.17581 -22.42217 -21.44988 -20.62793 -19.84660 -19.23818 -18.24359 -17.87194 -17.69694 -16.83184 -16.75074 -16.35296 -16.30682 -15.99076 -15.94248 -15.90035 -15.60671 -15.35180 -15.24371 -14.91255 -14.54228 -14.43809 -14.25161 -14.17829 -13.93362 -13.55681 -13.10244 -13.00748 -12.82740 -12.68845 -12.52190 -12.46241 -12.41323 -12.36805 -12.25034 -12.15980 -12.01513 -11.46400 -11.37020 -10.83410 -10.81311 -10.58992 -10.47188 -10.11822 -9.79303 -9.04014 -8.45327 -6.16272 0.12140 0.72767 1.31221 1.43980 1.48914 2.08825 2.14559 2.17065 2.52112 2.85362 2.87143 3.21650 3.25926 3.46529 3.62496 3.70243 3.74304 3.79866 3.94850 4.00309 4.08067 4.15149 4.21024 4.27296 4.30189 4.39888 4.48580 4.52346 4.59965 4.65678 4.68911 4.73205 4.84048 4.86692 4.92139 4.97630 4.99061 5.05963 5.07230 5.10914 5.15260 5.47842 5.53807 5.60995 5.69715 5.91721 5.95081 6.10532 6.16955 6.69051 6.94024 7.48295 7.79622 8.74737 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012768 B = 0.002880 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.447107 B = 9718.618224 C =11209.679229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.021 4.021 3 Si 1.020 2.980 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.254 1.254 7 C -0.428 4.428 8 H 0.106 0.894 9 O -0.188 6.188 10 C 0.148 3.852 11 C -0.259 4.259 12 C -0.041 4.041 13 C -0.201 4.201 14 C -0.029 4.029 15 C -0.245 4.245 16 C 0.550 3.450 17 O -0.566 6.566 18 N -0.711 5.711 19 C 0.144 3.856 20 H 0.053 0.947 21 C -0.161 4.161 22 C 0.064 3.936 23 O -0.364 6.364 24 C 0.089 3.911 25 C -0.130 4.130 26 C 0.043 3.957 27 O -0.404 6.404 28 C 0.020 3.980 29 C -0.130 4.130 30 H 0.270 0.730 31 H 0.122 0.878 32 H 0.153 0.847 33 H 0.165 0.835 34 H 0.162 0.838 35 H 0.413 0.587 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.045 0.955 39 H 0.119 0.881 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.108 0.892 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.076 0.924 46 H 0.096 0.904 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.894 -22.182 2.166 22.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.220 4.220 3 Si 0.839 3.161 4 H -0.178 1.178 5 H -0.198 1.198 6 H -0.179 1.179 7 C -0.504 4.504 8 H 0.123 0.877 9 O -0.091 6.091 10 C 0.093 3.907 11 C -0.279 4.279 12 C -0.059 4.059 13 C -0.219 4.219 14 C -0.047 4.047 15 C -0.250 4.250 16 C 0.340 3.660 17 O -0.445 6.445 18 N -0.366 5.366 19 C 0.039 3.961 20 H 0.071 0.929 21 C -0.200 4.200 22 C -0.013 4.013 23 O -0.283 6.283 24 C 0.048 3.952 25 C -0.167 4.167 26 C -0.033 4.033 27 O -0.324 6.324 28 C -0.057 4.057 29 C -0.168 4.168 30 H 0.079 0.921 31 H 0.140 0.860 32 H 0.170 0.830 33 H 0.182 0.818 34 H 0.180 0.820 35 H 0.251 0.749 36 H 0.067 0.933 37 H 0.110 0.890 38 H 0.063 0.937 39 H 0.137 0.863 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.126 0.874 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.095 0.905 46 H 0.115 0.885 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.057 -21.302 2.141 21.626 hybrid contribution 0.547 1.549 -0.248 1.662 sum -2.510 -19.752 1.893 20.001 Atomic orbital electron populations 1.70309 1.08312 1.28594 1.46790 1.26730 0.96722 1.03053 0.95536 0.84647 0.77377 0.73982 0.80126 1.17789 1.19837 1.17862 1.21981 0.92655 0.81858 1.53915 0.87678 1.84174 1.35107 1.12128 1.77655 1.20107 0.91652 0.87628 0.91310 1.21303 0.92391 1.00960 1.13200 1.21434 1.00694 0.91332 0.92407 1.21184 0.94024 0.98375 1.08328 1.21317 0.94404 0.95637 0.93335 1.19301 0.92417 0.92865 1.20421 1.18536 0.88176 0.83436 0.75872 1.90934 1.67041 1.36575 1.49937 1.45639 1.06607 1.08195 1.76172 1.20918 0.80323 0.98791 0.96048 0.92903 1.22532 0.97277 1.02778 0.97372 1.22655 0.93143 0.87545 0.97930 1.87809 1.77680 1.40314 1.22495 1.22442 0.93127 0.96404 0.83197 1.23292 0.96490 0.95831 1.01067 1.23657 0.97222 0.81052 1.01367 1.88441 1.50981 1.24885 1.68095 1.23798 0.89403 0.96631 0.95820 1.22239 0.94561 0.97378 1.02624 0.92080 0.86030 0.82956 0.81798 0.82020 0.74885 0.93296 0.88980 0.93708 0.86311 0.86787 0.86937 0.87405 0.91918 0.92227 0.90543 0.88502 0.87138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -59.19 13.67 21.62 0.30 -58.89 16 2 C -0.02 -1.25 5.49 84.85 0.47 -0.79 16 3 Si 1.02 44.30 29.55 68.60 2.03 46.32 16 4 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 5 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 7 C -0.43 -25.90 9.49 67.93 0.64 -25.26 16 8 H 0.11 5.70 5.21 -2.91 -0.02 5.68 16 9 O -0.19 -11.93 7.84 0.81 0.01 -11.92 16 10 C 0.15 7.57 6.66 22.91 0.15 7.72 16 11 C -0.26 -10.98 9.16 22.36 0.20 -10.78 16 12 C -0.04 -1.24 10.03 22.30 0.22 -1.01 16 13 C -0.20 -5.14 10.03 22.25 0.22 -4.92 16 14 C -0.03 -0.82 9.53 22.52 0.21 -0.61 16 15 C -0.25 -10.39 5.89 -19.99 -0.12 -10.51 16 16 C 0.55 24.22 7.74 86.69 0.67 24.89 16 17 O -0.57 -32.81 14.83 16.90 0.25 -32.56 16 18 N -0.71 -21.15 5.03 -444.90 -2.24 -23.39 16 19 C 0.14 3.99 2.36 45.16 0.11 4.10 16 20 H 0.05 1.89 7.09 -2.39 -0.02 1.87 16 21 C -0.16 -4.30 5.70 30.69 0.17 -4.13 16 22 C 0.06 1.50 6.61 72.01 0.48 1.97 16 23 O -0.36 -7.95 10.28 -148.97 -1.53 -9.48 16 24 C 0.09 1.72 0.81 -10.17 -0.01 1.71 16 25 C -0.13 -1.70 6.31 31.92 0.20 -1.50 16 26 C 0.04 0.70 7.79 72.69 0.57 1.27 16 27 O -0.40 -10.08 11.37 -148.98 -1.69 -11.77 16 28 C 0.02 0.50 6.26 72.22 0.45 0.95 16 29 C -0.13 -2.34 4.22 30.46 0.13 -2.21 16 30 H 0.27 16.26 8.31 -92.71 -0.77 15.49 16 31 H 0.12 5.25 5.64 -2.91 -0.02 5.23 16 32 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 33 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 34 H 0.16 2.95 6.40 -2.91 -0.02 2.93 16 35 H 0.41 8.47 6.64 -92.71 -0.62 7.85 16 36 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.04 1.17 6.36 -2.38 -0.02 1.15 16 39 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.11 1.06 8.00 -2.39 -0.02 1.04 16 41 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.06 1.64 6.14 -2.38 -0.01 1.62 16 45 H 0.08 1.91 7.68 -2.39 -0.02 1.89 16 46 H 0.10 1.56 8.01 -2.39 -0.02 1.54 16 47 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -89.83 376.55 2.29 -87.53 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: 0.40 Total: 33.24 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: 4.78 Total: -19.09 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -1.94 Total: -82.27 kcal Atomic # 8 Polarization: -62.77 SS G_CDS: -2.97 Total: -65.73 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -89.83 2.29 -87.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362315129.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.137 kcal (2) G-P(sol) polarization free energy of solvation -89.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds