Wall clock time and date at job start Wed Apr 1 2020 04:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00450 * 2 1 4 4 H 1.48495 * 109.47094 * 239.99672 * 3 2 1 5 5 H 1.48504 * 109.46683 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47345 * 119.99245 * 3 2 1 7 7 C 1.38700 * 119.99634 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99585 * 180.02562 * 7 2 1 9 9 O 1.34812 * 120.00139 * 0.02562 * 7 2 1 10 10 C 1.35523 * 117.00082 * 185.06014 * 9 7 2 11 11 C 1.38838 * 120.16210 * 354.40652 * 10 9 7 12 12 C 1.38020 * 120.07528 * 180.02562 * 11 10 9 13 13 C 1.38573 * 120.39896 * 0.02562 * 12 11 10 14 14 C 1.37835 * 120.32572 * 359.74078 * 13 12 11 15 15 C 1.39671 * 119.91290 * 0.50858 * 14 13 12 16 16 C 1.47535 * 120.19251 * 179.76736 * 15 14 13 17 17 O 1.21593 * 120.00227 * 179.72053 * 16 15 14 18 18 N 1.34779 * 120.00236 * 359.73050 * 16 15 14 19 19 C 1.46502 * 120.00089 * 179.97438 * 18 16 15 20 20 H 1.08994 * 109.64070 * 325.25551 * 19 18 16 21 21 C 1.53173 * 109.55499 * 85.52046 * 19 18 16 22 22 C 1.53095 * 109.27729 * 177.30418 * 21 19 18 23 23 O 1.43021 * 109.37091 * 301.90889 * 22 21 19 24 24 C 1.42213 * 114.18969 * 60.02522 * 23 22 21 25 25 C 1.54020 * 110.32303 * 62.91331 * 24 23 22 26 26 C 1.54593 * 103.88459 * 118.55331 * 25 24 23 27 27 O 1.44472 * 104.82264 * 23.90859 * 26 25 24 28 28 C 1.44550 * 105.36126 * 319.82021 * 27 26 25 29 29 C 1.52489 * 110.96571 * 300.53517 * 24 23 22 30 30 H 0.97005 * 119.99942 * 0.02562 * 1 2 3 31 31 H 1.08007 * 119.95916 * 0.03977 * 11 10 9 32 32 H 1.07994 * 119.79931 * 179.97438 * 12 11 10 33 33 H 1.07996 * 119.83949 * 179.97438 * 13 12 11 34 34 H 1.07992 * 120.04245 * 180.25757 * 14 13 12 35 35 H 0.97004 * 119.99691 * 359.97438 * 18 16 15 36 36 H 1.08998 * 109.50946 * 57.36404 * 21 19 18 37 37 H 1.09003 * 109.50555 * 297.24494 * 21 19 18 38 38 H 1.09000 * 109.48710 * 181.94329 * 22 21 19 39 39 H 1.09000 * 109.49041 * 61.88142 * 22 21 19 40 40 H 1.09006 * 110.54384 * 237.15718 * 25 24 23 41 41 H 1.09008 * 110.54402 * 359.94833 * 25 24 23 42 42 H 1.09004 * 110.36985 * 142.74329 * 26 25 24 43 43 H 1.09003 * 110.36942 * 265.06986 * 26 25 24 44 44 H 1.09002 * 110.39372 * 281.20485 * 28 27 26 45 45 H 1.08999 * 110.39107 * 158.81824 * 28 27 26 46 46 H 1.09004 * 109.50910 * 175.98405 * 29 24 23 47 47 H 1.08997 * 109.51635 * 296.14601 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1031 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0086 -1.2012 0.0005 8 1 3.0886 -1.2012 0.0010 9 8 1.3345 -2.3687 0.0005 10 6 2.0684 -3.5030 0.1076 11 6 3.4553 -3.4403 0.0942 12 6 4.2010 -4.5966 0.2028 13 6 3.5741 -5.8264 0.3252 14 6 2.1983 -5.9072 0.3452 15 6 1.4306 -4.7460 0.2309 16 6 -0.0425 -4.8260 0.2464 17 8 -0.7075 -3.8124 0.1518 18 7 -0.6513 -6.0225 0.3655 19 6 -2.1141 -6.1018 0.3815 20 1 -2.5229 -5.2270 0.8869 21 6 -2.6403 -6.1561 -1.0560 22 6 -4.1636 -6.3066 -1.0313 23 8 -4.5116 -7.4908 -0.3088 24 6 -4.0685 -7.5003 1.0425 25 6 -4.7387 -6.3611 1.8332 26 6 -5.5390 -7.0944 2.9340 27 8 -4.8723 -8.3666 3.0903 28 6 -4.5309 -8.7871 1.7501 29 6 -2.5510 -7.3720 1.1200 30 1 -0.4850 0.8401 -0.0004 31 1 3.9512 -2.4855 -0.0010 32 1 5.2795 -4.5428 0.1915 33 1 4.1664 -6.7255 0.4092 34 1 1.7145 -6.8676 0.4449 35 1 -0.1209 -6.8312 0.4408 36 1 -2.1988 -7.0079 -1.5733 37 1 -2.3739 -5.2359 -1.5761 38 1 -4.5383 -6.3802 -2.0523 39 1 -4.6069 -5.4389 -0.5427 40 1 -3.9861 -5.7094 2.2772 41 1 -5.4081 -5.7907 1.1892 42 1 -5.5050 -6.5312 3.8667 43 1 -6.5712 -7.2433 2.6172 44 1 -5.4045 -9.2033 1.2484 45 1 -3.7226 -9.5179 1.7757 46 1 -2.2438 -7.3101 2.1640 47 1 -2.0878 -8.2417 0.6542 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362315130.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:43 Heat of formation + Delta-G solvation = -119.297796 kcal Electronic energy + Delta-G solvation = -31139.304702 eV Core-core repulsion = 26867.158935 eV Total energy + Delta-G solvation = -4272.145766 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.95666 -39.58407 -38.38026 -37.60893 -36.36274 -34.87817 -32.38496 -32.30474 -31.74680 -30.29778 -29.89803 -28.94280 -27.04665 -25.42621 -24.34491 -23.20176 -22.98652 -21.94341 -21.19098 -19.90535 -19.44544 -18.07478 -17.73164 -17.11336 -16.47681 -16.30811 -16.05184 -15.53574 -15.21374 -14.83548 -14.68254 -14.54727 -14.30699 -14.18715 -14.08699 -13.84200 -13.63426 -13.35604 -13.29185 -12.78056 -12.68717 -12.51222 -12.18354 -11.86037 -11.74364 -11.68794 -11.40552 -11.33341 -11.18821 -11.13649 -10.95045 -10.89171 -10.82164 -10.50511 -10.41273 -9.98039 -9.81774 -9.58469 -8.90176 -8.85538 -8.61537 -8.30024 -7.33802 -6.47163 -4.07062 1.68649 2.29458 3.09821 3.11812 3.14198 3.37072 3.55492 3.69594 3.73140 3.91346 4.29594 4.49100 4.53558 4.62792 4.78626 4.85908 4.91434 5.03188 5.04511 5.11032 5.15058 5.24053 5.25555 5.39765 5.43364 5.46497 5.49351 5.54524 5.56445 5.66542 5.72497 5.75308 5.78062 5.92277 5.99415 6.09314 6.12692 6.26965 6.40240 6.53694 6.66266 6.88062 6.92339 7.03542 7.07604 7.21307 7.26573 7.66782 7.89250 8.08457 8.92503 9.05600 9.64619 10.66547 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012457 B = 0.002920 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.109945 B = 9585.255345 C =10935.949213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.046 3.954 3 Si 0.940 3.060 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.405 4.405 8 H 0.093 0.907 9 O -0.124 6.124 10 C 0.190 3.810 11 C -0.238 4.238 12 C -0.050 4.050 13 C -0.231 4.231 14 C -0.038 4.038 15 C -0.228 4.228 16 C 0.556 3.444 17 O -0.501 6.501 18 N -0.739 5.739 19 C 0.151 3.849 20 H 0.089 0.911 21 C -0.167 4.167 22 C 0.063 3.937 23 O -0.368 6.368 24 C 0.093 3.907 25 C -0.187 4.187 26 C 0.048 3.952 27 O -0.370 6.370 28 C 0.062 3.938 29 C -0.144 4.144 30 H 0.272 0.728 31 H 0.132 0.868 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.392 0.608 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.057 0.943 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.101 0.899 46 H 0.085 0.915 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.883 -15.243 1.567 16.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.162 4.162 3 Si 0.764 3.236 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.480 4.480 8 H 0.111 0.889 9 O -0.022 6.022 10 C 0.130 3.870 11 C -0.257 4.257 12 C -0.069 4.069 13 C -0.250 4.250 14 C -0.057 4.057 15 C -0.233 4.233 16 C 0.345 3.655 17 O -0.375 6.375 18 N -0.394 5.394 19 C 0.045 3.955 20 H 0.107 0.893 21 C -0.206 4.206 22 C -0.014 4.014 23 O -0.288 6.288 24 C 0.052 3.948 25 C -0.225 4.225 26 C -0.029 4.029 27 O -0.289 6.289 28 C -0.015 4.015 29 C -0.182 4.182 30 H 0.082 0.918 31 H 0.149 0.851 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.226 0.774 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.075 0.925 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.119 0.881 46 H 0.103 0.897 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.916 -14.456 1.596 16.104 hybrid contribution 1.072 0.778 -0.172 1.336 sum -5.844 -13.678 1.424 14.942 Atomic orbital electron populations 1.70115 1.05971 1.27822 1.42518 1.25373 0.95800 0.98929 0.96131 0.85802 0.78809 0.79668 0.79279 1.19366 1.20141 1.19348 1.21453 0.91875 0.81142 1.53562 0.88936 1.84168 1.33524 1.10964 1.73508 1.19271 0.89852 0.87394 0.90501 1.21164 0.93405 0.99345 1.11826 1.20900 0.98659 0.92312 0.95037 1.20466 0.94065 0.97129 1.13325 1.20760 0.93861 0.95509 0.95550 1.18838 0.91905 0.92172 1.20407 1.18257 0.87834 0.82803 0.76573 1.90940 1.65770 1.33852 1.46913 1.45937 1.05795 1.09265 1.78380 1.20782 0.81434 0.98052 0.95191 0.89259 1.22621 0.95984 1.03827 0.98202 1.22657 0.94463 0.87493 0.96763 1.87806 1.77888 1.40901 1.22158 1.22310 0.93326 0.95714 0.83403 1.23625 1.01131 0.98991 0.98723 1.23406 0.95769 0.84327 0.99356 1.89186 1.77672 1.36613 1.25419 1.23241 1.00983 0.94722 0.82595 1.22373 0.94916 0.98602 1.02285 0.91827 0.85077 0.87170 0.87267 0.87085 0.77354 0.90997 0.89693 0.88358 0.92460 0.89341 0.89276 0.88752 0.91966 0.90885 0.88100 0.89656 0.90390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.83 13.67 55.48 0.76 -24.07 16 2 C 0.05 1.26 5.49 -17.52 -0.10 1.16 16 3 Si 0.94 20.34 29.55 -169.99 -5.02 15.32 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.40 -11.36 9.49 30.90 0.29 -11.07 16 8 H 0.09 2.35 5.21 -52.49 -0.27 2.08 16 9 O -0.12 -3.61 7.84 -21.06 -0.17 -3.78 16 10 C 0.19 4.66 6.66 -38.60 -0.26 4.40 16 11 C -0.24 -5.08 9.16 -39.44 -0.36 -5.44 16 12 C -0.05 -0.88 10.03 -39.54 -0.40 -1.28 16 13 C -0.23 -3.74 10.03 -39.61 -0.40 -4.14 16 14 C -0.04 -0.64 9.54 -39.19 -0.37 -1.01 16 15 C -0.23 -4.89 5.89 -104.81 -0.62 -5.50 16 16 C 0.56 11.90 7.74 -12.47 -0.10 11.80 16 17 O -0.50 -13.30 14.83 -16.57 -0.25 -13.55 16 18 N -0.74 -11.58 5.03 -54.62 -0.27 -11.85 16 19 C 0.15 2.12 2.32 -67.69 -0.16 1.96 16 20 H 0.09 1.48 6.43 -51.93 -0.33 1.15 16 21 C -0.17 -2.22 5.70 -26.59 -0.15 -2.38 16 22 C 0.06 0.71 6.55 37.21 0.24 0.96 16 23 O -0.37 -4.23 10.20 -35.23 -0.36 -4.59 16 24 C 0.09 0.99 1.04 -89.85 -0.09 0.90 16 25 C -0.19 -1.94 5.45 -25.36 -0.14 -2.08 16 26 C 0.05 0.45 7.64 37.99 0.29 0.74 16 27 O -0.37 -4.13 11.65 -35.23 -0.41 -4.54 16 28 C 0.06 0.59 6.92 37.66 0.26 0.85 16 29 C -0.14 -1.57 4.08 -26.84 -0.11 -1.68 16 30 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.13 2.75 5.64 -52.48 -0.30 2.46 16 32 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 34 H 0.11 1.44 6.40 -52.49 -0.34 1.10 16 35 H 0.39 4.95 6.64 -40.82 -0.27 4.68 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.65 6.59 -51.93 -0.34 0.31 16 40 H 0.09 1.00 6.82 -51.93 -0.35 0.65 16 41 H 0.09 0.89 6.69 -51.92 -0.35 0.55 16 42 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 45 H 0.10 0.83 7.85 -51.93 -0.41 0.42 16 46 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 375.58 15.07 5.66 5.66 Total: -1.00 -34.41 375.58 -8.54 -42.94 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -6.32 Total: 10.25 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -2.16 Total: -11.80 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.48 Total: -35.92 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -1.18 Total: -26.45 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.41 -8.54 -42.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362315130.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.354 kcal (2) G-P(sol) polarization free energy of solvation -34.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds