Wall clock time and date at job start Wed Apr 1 2020 04:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00450 * 2 1 4 4 H 1.48495 * 109.47094 * 239.99672 * 3 2 1 5 5 H 1.48504 * 109.46683 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47345 * 119.99245 * 3 2 1 7 7 C 1.38700 * 119.99634 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99585 * 180.02562 * 7 2 1 9 9 O 1.34812 * 120.00139 * 0.02562 * 7 2 1 10 10 C 1.35523 * 117.00082 * 185.06014 * 9 7 2 11 11 C 1.38838 * 120.16210 * 354.40652 * 10 9 7 12 12 C 1.38020 * 120.07528 * 180.02562 * 11 10 9 13 13 C 1.38573 * 120.39896 * 0.02562 * 12 11 10 14 14 C 1.37835 * 120.32572 * 359.74078 * 13 12 11 15 15 C 1.39671 * 119.91290 * 0.50858 * 14 13 12 16 16 C 1.47535 * 120.19251 * 179.76736 * 15 14 13 17 17 O 1.21593 * 120.00227 * 179.72053 * 16 15 14 18 18 N 1.34779 * 120.00236 * 359.73050 * 16 15 14 19 19 C 1.46502 * 120.00089 * 179.97438 * 18 16 15 20 20 H 1.08994 * 109.64070 * 325.25551 * 19 18 16 21 21 C 1.53173 * 109.55499 * 85.52046 * 19 18 16 22 22 C 1.53095 * 109.27729 * 177.30418 * 21 19 18 23 23 O 1.43021 * 109.37091 * 301.90889 * 22 21 19 24 24 C 1.42213 * 114.18969 * 60.02522 * 23 22 21 25 25 C 1.54020 * 110.32303 * 62.91331 * 24 23 22 26 26 C 1.54593 * 103.88459 * 118.55331 * 25 24 23 27 27 O 1.44472 * 104.82264 * 23.90859 * 26 25 24 28 28 C 1.44550 * 105.36126 * 319.82021 * 27 26 25 29 29 C 1.52489 * 110.96571 * 300.53517 * 24 23 22 30 30 H 0.97005 * 119.99942 * 0.02562 * 1 2 3 31 31 H 1.08007 * 119.95916 * 0.03977 * 11 10 9 32 32 H 1.07994 * 119.79931 * 179.97438 * 12 11 10 33 33 H 1.07996 * 119.83949 * 179.97438 * 13 12 11 34 34 H 1.07992 * 120.04245 * 180.25757 * 14 13 12 35 35 H 0.97004 * 119.99691 * 359.97438 * 18 16 15 36 36 H 1.08998 * 109.50946 * 57.36404 * 21 19 18 37 37 H 1.09003 * 109.50555 * 297.24494 * 21 19 18 38 38 H 1.09000 * 109.48710 * 181.94329 * 22 21 19 39 39 H 1.09000 * 109.49041 * 61.88142 * 22 21 19 40 40 H 1.09006 * 110.54384 * 237.15718 * 25 24 23 41 41 H 1.09008 * 110.54402 * 359.94833 * 25 24 23 42 42 H 1.09004 * 110.36985 * 142.74329 * 26 25 24 43 43 H 1.09003 * 110.36942 * 265.06986 * 26 25 24 44 44 H 1.09002 * 110.39372 * 281.20485 * 28 27 26 45 45 H 1.08999 * 110.39107 * 158.81824 * 28 27 26 46 46 H 1.09004 * 109.50910 * 175.98405 * 29 24 23 47 47 H 1.08997 * 109.51635 * 296.14601 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1031 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0086 -1.2012 0.0005 8 1 3.0886 -1.2012 0.0010 9 8 1.3345 -2.3687 0.0005 10 6 2.0684 -3.5030 0.1076 11 6 3.4553 -3.4403 0.0942 12 6 4.2010 -4.5966 0.2028 13 6 3.5741 -5.8264 0.3252 14 6 2.1983 -5.9072 0.3452 15 6 1.4306 -4.7460 0.2309 16 6 -0.0425 -4.8260 0.2464 17 8 -0.7075 -3.8124 0.1518 18 7 -0.6513 -6.0225 0.3655 19 6 -2.1141 -6.1018 0.3815 20 1 -2.5229 -5.2270 0.8869 21 6 -2.6403 -6.1561 -1.0560 22 6 -4.1636 -6.3066 -1.0313 23 8 -4.5116 -7.4908 -0.3088 24 6 -4.0685 -7.5003 1.0425 25 6 -4.7387 -6.3611 1.8332 26 6 -5.5390 -7.0944 2.9340 27 8 -4.8723 -8.3666 3.0903 28 6 -4.5309 -8.7871 1.7501 29 6 -2.5510 -7.3720 1.1200 30 1 -0.4850 0.8401 -0.0004 31 1 3.9512 -2.4855 -0.0010 32 1 5.2795 -4.5428 0.1915 33 1 4.1664 -6.7255 0.4092 34 1 1.7145 -6.8676 0.4449 35 1 -0.1209 -6.8312 0.4408 36 1 -2.1988 -7.0079 -1.5733 37 1 -2.3739 -5.2359 -1.5761 38 1 -4.5383 -6.3802 -2.0523 39 1 -4.6069 -5.4389 -0.5427 40 1 -3.9861 -5.7094 2.2772 41 1 -5.4081 -5.7907 1.1892 42 1 -5.5050 -6.5312 3.8667 43 1 -6.5712 -7.2433 2.6172 44 1 -5.4045 -9.2033 1.2484 45 1 -3.7226 -9.5179 1.7757 46 1 -2.2438 -7.3101 2.1640 47 1 -2.0878 -8.2417 0.6542 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362315130.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:42 Heat of formation + Delta-G solvation = -144.351410 kcal Electronic energy + Delta-G solvation = -31140.391108 eV Core-core repulsion = 26867.158935 eV Total energy + Delta-G solvation = -4273.232172 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.94466 -41.16757 -39.86435 -38.70903 -38.02878 -36.25228 -34.33916 -33.36396 -33.02702 -31.50390 -30.94127 -30.57301 -28.00522 -27.36208 -25.49945 -24.52758 -23.84654 -23.33146 -22.57194 -21.44459 -20.47150 -19.85222 -19.27487 -18.14563 -17.87114 -17.39694 -17.10766 -16.84687 -16.34873 -16.20463 -16.04322 -15.97440 -15.71085 -15.55785 -15.45314 -15.25767 -14.99766 -14.65070 -14.38979 -14.25986 -14.13167 -13.88200 -13.55952 -13.04846 -12.99583 -12.81561 -12.72699 -12.62154 -12.51668 -12.37670 -12.26019 -12.16933 -12.11939 -11.93533 -11.46765 -11.39972 -10.86809 -10.83182 -10.77871 -10.46298 -10.11448 -9.79959 -9.04732 -8.45639 -6.16586 0.11277 0.71972 1.31302 1.44039 1.48907 2.08097 2.14592 2.17295 2.51737 2.86655 2.93601 3.21234 3.44147 3.46025 3.58581 3.65653 3.75713 3.88238 3.96942 4.05554 4.07436 4.11581 4.16601 4.28162 4.28876 4.36698 4.51282 4.59029 4.63371 4.66943 4.67897 4.72915 4.78365 4.86287 4.90449 4.94437 4.97465 4.99943 5.06454 5.11717 5.15695 5.47132 5.54051 5.60146 5.61667 5.68822 5.94848 6.16021 6.16726 6.67739 6.93699 7.47114 7.79102 8.74485 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012457 B = 0.002920 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.109945 B = 9585.255345 C =10935.949213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.020 4.020 3 Si 1.020 2.980 4 H -0.254 1.254 5 H -0.273 1.273 6 H -0.255 1.255 7 C -0.429 4.429 8 H 0.106 0.894 9 O -0.188 6.188 10 C 0.149 3.851 11 C -0.259 4.259 12 C -0.040 4.040 13 C -0.201 4.201 14 C -0.030 4.030 15 C -0.246 4.246 16 C 0.550 3.450 17 O -0.566 6.566 18 N -0.713 5.713 19 C 0.148 3.852 20 H 0.055 0.945 21 C -0.162 4.162 22 C 0.068 3.932 23 O -0.366 6.366 24 C 0.090 3.910 25 C -0.190 4.190 26 C 0.049 3.951 27 O -0.385 6.385 28 C 0.064 3.936 29 C -0.132 4.132 30 H 0.270 0.730 31 H 0.123 0.877 32 H 0.153 0.847 33 H 0.164 0.836 34 H 0.161 0.839 35 H 0.411 0.589 36 H 0.088 0.912 37 H 0.048 0.952 38 H 0.118 0.882 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.120 0.880 46 H 0.087 0.913 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.599 -19.511 1.882 19.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.220 4.220 3 Si 0.839 3.161 4 H -0.178 1.178 5 H -0.198 1.198 6 H -0.179 1.179 7 C -0.505 4.505 8 H 0.123 0.877 9 O -0.091 6.091 10 C 0.094 3.906 11 C -0.278 4.278 12 C -0.058 4.058 13 C -0.219 4.219 14 C -0.048 4.048 15 C -0.251 4.251 16 C 0.340 3.660 17 O -0.444 6.444 18 N -0.368 5.368 19 C 0.043 3.957 20 H 0.073 0.927 21 C -0.201 4.201 22 C -0.009 4.009 23 O -0.285 6.285 24 C 0.049 3.951 25 C -0.228 4.228 26 C -0.027 4.027 27 O -0.305 6.305 28 C -0.012 4.012 29 C -0.170 4.170 30 H 0.079 0.921 31 H 0.140 0.860 32 H 0.171 0.829 33 H 0.182 0.818 34 H 0.178 0.822 35 H 0.250 0.750 36 H 0.107 0.893 37 H 0.067 0.933 38 H 0.136 0.864 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.119 0.881 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.138 0.862 46 H 0.105 0.895 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.583 -18.851 1.921 19.495 hybrid contribution 0.512 1.633 -0.237 1.728 sum -4.071 -17.218 1.684 17.773 Atomic orbital electron populations 1.70311 1.08311 1.28599 1.46750 1.26728 0.96728 1.03026 0.95483 0.84646 0.77388 0.73967 0.80120 1.17816 1.19763 1.17870 1.21992 0.92675 0.81865 1.53990 0.87685 1.84173 1.35116 1.12129 1.77632 1.20082 0.91636 0.87582 0.91274 1.21310 0.92384 1.00965 1.13175 1.21435 1.00713 0.91299 0.92383 1.21181 0.93978 0.98416 1.08347 1.21312 0.94453 0.95624 0.93399 1.19308 0.92441 0.92889 1.20459 1.18527 0.88173 0.83412 0.75873 1.90926 1.67036 1.36498 1.49990 1.45682 1.06772 1.08185 1.76142 1.20885 0.80120 0.98682 0.96042 0.92718 1.22539 0.97736 1.02606 0.97186 1.22630 0.92829 0.87538 0.97902 1.87814 1.77794 1.40470 1.22444 1.22420 0.92945 0.96534 0.83176 1.23621 1.00955 0.99029 0.99217 1.23480 0.96113 0.83815 0.99309 1.89170 1.77932 1.37033 1.26321 1.23342 1.02017 0.94089 0.81787 1.22319 0.95412 0.97251 1.02016 0.92056 0.85955 0.82896 0.81833 0.82201 0.75045 0.89298 0.93321 0.86367 0.93206 0.91098 0.89379 0.88069 0.90544 0.90028 0.86181 0.89452 0.87814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -58.91 13.67 21.62 0.30 -58.61 16 2 C -0.02 -1.20 5.49 84.85 0.47 -0.73 16 3 Si 1.02 44.12 29.55 68.60 2.03 46.15 16 4 H -0.25 -10.19 7.11 99.48 0.71 -9.49 16 5 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 6 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 7 C -0.43 -25.98 9.49 67.93 0.64 -25.34 16 8 H 0.11 5.70 5.21 -2.91 -0.02 5.68 16 9 O -0.19 -11.95 7.84 0.83 0.01 -11.94 16 10 C 0.15 7.68 6.66 22.91 0.15 7.83 16 11 C -0.26 -11.05 9.16 22.36 0.20 -10.85 16 12 C -0.04 -1.24 10.03 22.30 0.22 -1.02 16 13 C -0.20 -5.28 10.03 22.25 0.22 -5.06 16 14 C -0.03 -0.87 9.54 22.52 0.21 -0.66 16 15 C -0.25 -10.59 5.89 -19.99 -0.12 -10.71 16 16 C 0.55 24.60 7.74 86.70 0.67 25.27 16 17 O -0.57 -32.91 14.83 16.89 0.25 -32.66 16 18 N -0.71 -22.02 5.03 -444.96 -2.24 -24.26 16 19 C 0.15 4.21 2.32 45.15 0.10 4.31 16 20 H 0.05 1.98 6.43 -2.39 -0.02 1.96 16 21 C -0.16 -4.36 5.70 30.68 0.17 -4.19 16 22 C 0.07 1.52 6.55 72.01 0.47 1.99 16 23 O -0.37 -7.75 10.20 -148.98 -1.52 -9.27 16 24 C 0.09 1.77 1.04 -10.29 -0.01 1.76 16 25 C -0.19 -3.97 5.45 31.48 0.17 -3.80 16 26 C 0.05 0.88 7.64 72.52 0.55 1.43 16 27 O -0.39 -7.83 11.65 -148.98 -1.74 -9.57 16 28 C 0.06 1.06 6.92 72.31 0.50 1.56 16 29 C -0.13 -2.64 4.08 30.52 0.12 -2.52 16 30 H 0.27 16.17 8.31 -92.70 -0.77 15.40 16 31 H 0.12 5.30 5.64 -2.91 -0.02 5.29 16 32 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 33 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 34 H 0.16 3.11 6.40 -2.91 -0.02 3.10 16 35 H 0.41 9.10 6.64 -92.71 -0.62 8.49 16 36 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.05 1.19 6.59 -2.39 -0.02 1.18 16 40 H 0.07 1.72 6.82 -2.38 -0.02 1.70 16 41 H 0.09 1.83 6.69 -2.38 -0.02 1.81 16 42 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.08 1.24 8.07 -2.39 -0.02 1.22 16 45 H 0.12 1.52 7.85 -2.39 -0.02 1.50 16 46 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -87.44 375.58 2.26 -85.18 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: 0.40 Total: 35.70 kcal Atomic # 6 Polarization: -25.49 SS G_CDS: 4.77 Total: -20.71 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -1.94 Total: -82.88 kcal Atomic # 8 Polarization: -60.44 SS G_CDS: -3.00 Total: -63.43 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -87.44 2.26 -85.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362315130.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.173 kcal (2) G-P(sol) polarization free energy of solvation -87.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds